National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                                    
C   9                                      
D   18     1     1                          
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21               1                      
L   45                 1                    
M   6             1                        
N   21                     1                
P   18                             3        
Q   12                                      
R   18               1                      
S   15                                      
T   36 1           1                        
V   18                                      
W   3                                      
Y   15                                     2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Korea 12686 A 1631 1631
1 South_Korea 12687 A 1631 1631
2 South_Korea 12688 T 1631 1631
3 South_Korea 12689 A 1631 1631
4 South_Korea 12690 A 1631 1631
5 South_Korea 12691 T 1631 1631
6 South_Korea 12692 G 1631 1631
7 South_Korea 12693 A 1631 1631
8 South_Korea 12694 G 1631 1631
9 South_Korea 12695 C 1631 1631
10 South_Korea 12696 T 1631 1631
11 South_Korea 12697 T 1631 1631
12 South_Korea 12698 A 1631 1631
13 South_Korea 12699 G 1631 1631
14 South_Korea 12700 T 1631 1631
15 South_Korea 12701 C 1631 1631
16 South_Korea 12702 C 1631 1631
17 South_Korea 12703 T 1631 1631
18 South_Korea 12704 G 1631 1631
19 South_Korea 12705 T 1631 1631
20 South_Korea 12706 T 1631 1631
21 South_Korea 12707 G 1631 1631
22 South_Korea 12708 C 1631 1631
23 South_Korea 12709 A 1631 1631
24 South_Korea 12710 C 1631 1631
25 South_Korea 12711 T 1631 1631
26 South_Korea 12712 A 1631 1631
27 South_Korea 12713 C 1631 1631
28 South_Korea 12714 G 1631 1631
29 South_Korea 12715 A 1631 1631
30 South_Korea 12716 C 1631 1631
31 South_Korea 12717 A 1631 1631
32 South_Korea 12718 G 1631 1631
33 South_Korea 12719 A 1631 1631
34 South_Korea 12720 T 1631 1631
35 South_Korea 12721 G 1631 1631
36 South_Korea 12722 T 1631 1631
37 South_Korea 12723 C 1631 1631
38 South_Korea 12724 T 1631 1631
39 South_Korea 12725 T 1631 1631
40 South_Korea 12726 G 1631 1631
41 South_Korea 12727 T 1631 1631
42 South_Korea 12728 G 1631 1631
43 South_Korea 12729 C 1631 1631
44 South_Korea 12730 T 1631 1631
45 South_Korea 12731 G 1631 1631
46 South_Korea 12732 C 1631 1631
47 South_Korea 12733 C A 1631 1630 Ala4156Ala
48 South_Korea 12734 G 1631 1631
49 South_Korea 12735 G 1631 1631
50 South_Korea 12736 T 1631 1631
51 South_Korea 12737 A 1631 1631
52 South_Korea 12738 C 1631 1631
53 South_Korea 12739 T 1631 1631
54 South_Korea 12740 A 1631 1631
55 South_Korea 12741 C 1631 1631
56 South_Korea 12742 A 1631 1631
57 South_Korea 12743 C 1631 1631
58 South_Korea 12744 A 1631 1631
59 South_Korea 12745 A 1631 1631
60 South_Korea 12746 A 1631 1631
61 South_Korea 12747 C 1631 1631
62 South_Korea 12748 T 1631 1631
63 South_Korea 12749 G 1631 1631
64 South_Korea 12750 C 1631 1631
65 South_Korea 12751 T 1631 1631
66 South_Korea 12752 T 1631 1631
67 South_Korea 12753 G 1631 1631
68 South_Korea 12754 C 1631 1631
69 South_Korea 12755 A 1631 1631
70 South_Korea 12756 C 1631 1631
71 South_Korea 12757 T 1631 1631
72 South_Korea 12758 G 1631 1630
73 South_Korea 12759 A 1631 1631
74 South_Korea 12760 T 1631 1631
75 South_Korea 12761 G 1631 1631
76 South_Korea 12762 A 1631 1631
77 South_Korea 12763 C 1631 1631
78 South_Korea 12764 A 1631 1631
79 South_Korea 12765 A 1631 1631
80 South_Korea 12766 T 1631 1631
81 South_Korea 12767 G 1631 1631
82 South_Korea 12768 C 1631 1631
83 South_Korea 12769 G 1631 1631
84 South_Korea 12770 T 1631 1631
85 South_Korea 12771 T 1631 1631
86 South_Korea 12772 A 1631 1631
87 South_Korea 12773 G 1631 1631
88 South_Korea 12774 C 1631 1631
89 South_Korea 12775 T 1631 1631
90 South_Korea 12776 T 1631 1631
91 South_Korea 12777 A 1631 1631
92 South_Korea 12778 C T 1631 1630 Tyr4171Tyr
93 South_Korea 12779 T 1631 1631
94 South_Korea 12780 A 1631 1631
95 South_Korea 12781 C T 1631 1630 Tyr4172Tyr
96 South_Korea 12782 A 1631 1631
97 South_Korea 12783 A 1631 1631
98 South_Korea 12784 C 1631 1631
99 South_Korea 12785 A 1631 1631
100 South_Korea 12786 C 1631 1631
101 South_Korea 12787 A 1631 1631
102 South_Korea 12788 A 1631 1631
103 South_Korea 12789 C T 1631 1627 Thr4175Ile
104 South_Korea 12790 A 1631 1631
105 South_Korea 12791 A 1631 1631
106 South_Korea 12792 A 1631 1631
107 South_Korea 12793 G 1631 1631
108 South_Korea 12794 G 1631 1631
109 South_Korea 12795 G 1631 1631
110 South_Korea 12796 A 1631 1631
111 South_Korea 12797 G 1631 1631
112 South_Korea 12798 G 1631 1631
113 South_Korea 12799 T 1631 1631
114 South_Korea 12800 A 1631 1631
115 South_Korea 12801 G 1631 1631
116 South_Korea 12802 G 1631 1631
117 South_Korea 12803 T 1631 1631
118 South_Korea 12804 T 1631 1631
119 South_Korea 12805 T 1631 1631
120 South_Korea 12806 G 1631 1631
121 South_Korea 12807 T 1631 1631
122 South_Korea 12808 A 1631 1631
123 South_Korea 12809 C 1631 1631
124 South_Korea 12810 T 1631 1631
125 South_Korea 12811 T 1631 1631
126 South_Korea 12812 G 1631 1631
127 South_Korea 12813 C 1631 1631
128 South_Korea 12814 A 1631 1631
129 South_Korea 12815 C T 1631 1630 Leu4184Leu
130 South_Korea 12816 T 1631 1631
131 South_Korea 12817 G 1631 1631
132 South_Korea 12818 T 1631 1631
133 South_Korea 12819 T 1631 1631
134 South_Korea 12820 A 1631 1631
135 South_Korea 12821 T 1631 1631
136 South_Korea 12822 C 1631 1631
137 South_Korea 12823 C 1631 1631
138 South_Korea 12824 G 1631 1631
139 South_Korea 12825 A 1631 1631
140 South_Korea 12826 T 1631 1631
141 South_Korea 12827 T 1631 1631
142 South_Korea 12828 T 1631 1631
143 South_Korea 12829 A 1631 1631
144 South_Korea 12830 C 1631 1631
145 South_Korea 12831 A 1631 1631
146 South_Korea 12832 G 1631 1631
147 South_Korea 12833 G 1631 1631
148 South_Korea 12834 A 1631 1631
149 South_Korea 12835 T 1631 1631
150 South_Korea 12836 T 1631 1631
151 South_Korea 12837 T 1632 1632
152 South_Korea 12838 G 1632 1632
153 South_Korea 12839 A 1632 1632
154 South_Korea 12840 A 1632 1632
155 South_Korea 12841 A 1632 1632
156 South_Korea 12842 T 1632 1632
157 South_Korea 12843 G 1632 1632
158 South_Korea 12844 G 1632 1632
159 South_Korea 12845 G 1632 1632
160 South_Korea 12846 C 1632 1632
161 South_Korea 12847 T 1632 1632
162 South_Korea 12848 A 1632 1632
163 South_Korea 12849 G 1632 1632
164 South_Korea 12850 A 1632 1632
165 South_Korea 12851 T 1632 1632
166 South_Korea 12852 T 1632 1632
167 South_Korea 12853 C 1632 1632
168 South_Korea 12854 C 1632 1632
169 South_Korea 12855 C 1632 1632
170 South_Korea 12856 T 1632 1632
171 South_Korea 12857 A 1632 1632
172 South_Korea 12858 A 1632 1632
173 South_Korea 12859 G 1632 1632
174 South_Korea 12860 A 1632 1632
175 South_Korea 12861 G 1632 1632
176 South_Korea 12862 T 1632 1632
177 South_Korea 12863 G 1632 1632
178 South_Korea 12864 A 1632 1632
179 South_Korea 12865 T 1632 1632
180 South_Korea 12866 G 1632 1632
181 South_Korea 12867 G 1632 1632
182 South_Korea 12868 A 1632 1632
183 South_Korea 12869 A 1632 1632
184 South_Korea 12870 C 1632 1632
185 South_Korea 12871 T 1632 1632
186 South_Korea 12872 G 1632 1632
187 South_Korea 12873 G 1632 1632
188 South_Korea 12874 T 1632 1632
189 South_Korea 12875 A 1632 1632
190 South_Korea 12876 C 1632 1632
191 South_Korea 12877 T 1632 1632
192 South_Korea 12878 A 1632 1632
193 South_Korea 12879 T 1632 1632
194 South_Korea 12880 C 1632 1632
195 South_Korea 12881 T 1632 1632
196 South_Korea 12882 A 1632 1632
197 South_Korea 12883 T 1632 1632
198 South_Korea 12884 A G 1632 1631 Thr4207Ala
199 South_Korea 12885 C 1632 1632
200 South_Korea 12886 A 1632 1632
201 South_Korea 12887 G 1632 1632
202 South_Korea 12888 A 1632 1632
203 South_Korea 12889 A 1632 1632
204 South_Korea 12890 C 1632 1632
205 South_Korea 12891 T 1632 1632
206 South_Korea 12892 G 1632 1632
207 South_Korea 12893 G 1632 1632
208 South_Korea 12894 A 1632 1632
209 South_Korea 12895 A 1632 1632
210 South_Korea 12896 C T 1632 1631 Pro4211Ser
211 South_Korea 12897 C 1632 1632
212 South_Korea 12898 A 1632 1632
213 South_Korea 12899 C 1632 1632
214 South_Korea 12900 C 1632 1632
215 South_Korea 12901 T 1632 1632
216 South_Korea 12902 T 1632 1632
217 South_Korea 12903 G 1632 1632
218 South_Korea 12904 T 1632 1632
219 South_Korea 12905 A 1632 1632
220 South_Korea 12906 G A 1632 1631 Arg4214Lys
221 South_Korea 12907 G 1632 1632
222 South_Korea 12908 T 1632 1632
223 South_Korea 12909 T 1632 1632
224 South_Korea 12910 T 1632 1632
225 South_Korea 12911 G 1632 1632
226 South_Korea 12912 T 1632 1632
227 South_Korea 12913 T 1632 1632
228 South_Korea 12914 A 1632 1632
229 South_Korea 12915 C 1632 1632
230 South_Korea 12916 A 1632 1632
231 South_Korea 12917 G 1632 1632
232 South_Korea 12918 A G 1632 1631 Asp4218Gly
233 South_Korea 12919 C T 1632 1629 Asp4218Asp
234 South_Korea 12920 A 1632 1632
235 South_Korea 12921 C 1632 1632
236 South_Korea 12922 A 1632 1632
237 South_Korea 12923 C T 1632 1631 Pro4220Ser
238 South_Korea 12924 C 1632 1632
239 South_Korea 12925 T 1632 1632
240 South_Korea 12926 A 1632 1632
241 South_Korea 12927 A 1632 1632
242 South_Korea 12928 A G 1632 1630 Lys4221Lys
243 South_Korea 12929 G 1632 1632
244 South_Korea 12930 G 1632 1632
245 South_Korea 12931 T 1632 1632
246 South_Korea 12932 C T 1632 1555 Pro4223Ser
247 South_Korea 12933 C 1632 1632
248 South_Korea 12934 T 1632 1632
249 South_Korea 12935 A 1632 1632
250 South_Korea 12936 A 1632 1632
251 South_Korea 12937 A 1632 1632
252 South_Korea 12938 G 1632 1632
253 South_Korea 12939 T 1632 1632
254 South_Korea 12940 G 1632 1632
255 South_Korea 12941 A 1632 1632
256 South_Korea 12942 A 1632 1632
257 South_Korea 12943 G 1632 1632
258 South_Korea 12944 T 1632 1632
259 South_Korea 12945 A 1632 1632
260 South_Korea 12946 T 1632 1632
261 South_Korea 12947 T 1632 1632
262 South_Korea 12948 T 1632 1632
263 South_Korea 12949 A 1632 1632
264 South_Korea 12950 T 1632 1632
265 South_Korea 12951 A 1632 1632
266 South_Korea 12952 C 1632 1632
267 South_Korea 12953 T 1632 1632
268 South_Korea 12954 T 1632 1632
269 South_Korea 12955 T 1632 1632
270 South_Korea 12956 A 1632 1632
271 South_Korea 12957 T 1632 1632
272 South_Korea 12958 T 1632 1632
273 South_Korea 12959 A 1632 1632
274 South_Korea 12960 A 1632 1632
275 South_Korea 12961 A 1632 1632
276 South_Korea 12962 G 1632 1632
277 South_Korea 12963 G 1632 1632
278 South_Korea 12964 A 1632 1632
279 South_Korea 12965 T 1632 1632
280 South_Korea 12966 T 1632 1632
281 South_Korea 12967 A 1632 1632
282 South_Korea 12968 A 1632 1632
283 South_Korea 12969 A 1632 1632
284 South_Korea 12970 C T 1632 1631 Asn4235Asn
285 South_Korea 12971 A 1632 1632
286 South_Korea 12972 A 1632 1632
287 South_Korea 12973 C 1632 1632
288 South_Korea 12974 C 1632 1632
289 South_Korea 12975 T 1632 1632
290 South_Korea 12976 A 1632 1632
291 South_Korea 12977 A 1632 1632
292 South_Korea 12978 A 1632 1632
293 South_Korea 12979 T 1632 1632
294 South_Korea 12980 A 1632 1632
295 South_Korea 12981 G 1632 1632
296 South_Korea 12982 A 1632 1632
297 South_Korea 12983 G 1632 1632
298 South_Korea 12984 G 1632 1632
299 South_Korea 12985 T 1632 1632
300 South_Korea 12986 A 1632 1632
301 South_Korea 12987 T 1632 1632
302 South_Korea 12988 G T 1632 1629 Met4241Ile
303 South_Korea 12989 G 1632 1632
304 South_Korea 12990 T 1632 1632
305 South_Korea 12991 A 1632 1632
306 South_Korea 12992 C 1632 1632
307 South_Korea 12993 T 1632 1632
308 South_Korea 12994 T 1632 1632
309 South_Korea 12995 G 1632 1632
310 South_Korea 12996 G 1632 1632
311 South_Korea 12997 T 1632 1632
312 South_Korea 12998 A 1632 1632
313 South_Korea 12999 G 1632 1632
314 South_Korea 13000 T 1632 1632
315 South_Korea 13001 T 1632 1632
316 South_Korea 13002 T 1632 1632
317 South_Korea 13003 A 1632 1632
318 South_Korea 13004 G 1632 1632
319 South_Korea 13005 C 1632 1632
320 South_Korea 13006 T 1632 1632
321 South_Korea 13007 G 1632 1632
322 South_Korea 13008 C 1632 1632
323 South_Korea 13009 C 1632 1632
324 South_Korea 13010 A 1632 1632
325 South_Korea 13011 C 1632 1632
326 South_Korea 13012 A 1632 1632
327 South_Korea 13013 G 1632 1632
328 South_Korea 13014 T 1632 1632
329 South_Korea 13015 A 1632 1632
330 South_Korea 13016 C 1632 1632
331 South_Korea 13017 G 1632 1632
332 South_Korea 13018 T 1632 1632
333 South_Korea 13019 C 1632 1632
334 South_Korea 13020 T 1632 1632
335 South_Korea 13021 A 1632 1632
336 South_Korea 13022 C 1632 1632
337 South_Korea 13023 A 1632 1632
338 South_Korea 13024 A 1632 1632