National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                                    
C   9                                      
D   18     1               1                
E   9                                      
F   12   1     1       1                    
G   27           1                          
I   6             1                        
K   21                     1     1          
L   45         1       1           1        
M   6             1                        
N   21                     1                
P   18                 1           2        
Q   12                                      
R   18                           1          
S   15                           1 1        
T   36             5 1                      
V   18                                      
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Africa 12686 A 3060 3060
1 South_Africa 12687 A 3060 3060
2 South_Africa 12688 T 3060 3060
3 South_Africa 12689 A 3060 3060
4 South_Africa 12690 A 3060 3060
5 South_Africa 12691 T 3060 3060
6 South_Africa 12692 G 3060 3060
7 South_Africa 12693 A 3060 3060
8 South_Africa 12694 G 3060 3060
9 South_Africa 12695 C 3060 3060
10 South_Africa 12696 T 3060 3060
11 South_Africa 12697 T 3060 3060
12 South_Africa 12698 A 3060 3060
13 South_Africa 12699 G 3060 3060
14 South_Africa 12700 T 3060 3060
15 South_Africa 12701 C 3060 3060
16 South_Africa 12702 C 3060 3060
17 South_Africa 12703 T 3060 3060
18 South_Africa 12704 G 3060 3060
19 South_Africa 12705 T 3060 3060
20 South_Africa 12706 T 3060 3060
21 South_Africa 12707 G 3060 3060
22 South_Africa 12708 C 3060 3060
23 South_Africa 12709 A 3060 3060
24 South_Africa 12710 C 3061 3061
25 South_Africa 12711 T 3062 3062
26 South_Africa 12712 A 3062 3062
27 South_Africa 12713 C 3062 3062
28 South_Africa 12714 G 3062 3062
29 South_Africa 12715 A 3062 3062
30 South_Africa 12716 C 3062 3062
31 South_Africa 12717 A 3062 3062
32 South_Africa 12718 G 3063 3063
33 South_Africa 12719 A 3063 3063
34 South_Africa 12720 T 3063 3063
35 South_Africa 12721 G 3063 3063
36 South_Africa 12722 T 3063 3063
37 South_Africa 12723 C 3063 3063
38 South_Africa 12724 T 3063 3063
39 South_Africa 12725 T 3063 3063
40 South_Africa 12726 G 3063 3063
41 South_Africa 12727 T 3063 3063
42 South_Africa 12728 G 3063 3063
43 South_Africa 12729 C 3063 3063
44 South_Africa 12730 T 3063 3063
45 South_Africa 12731 G 3063 3063
46 South_Africa 12732 C 3063 3063
47 South_Africa 12733 C 3063 3063
48 South_Africa 12734 G 3063 3063
49 South_Africa 12735 G 3063 3063
50 South_Africa 12736 T 3063 3063
51 South_Africa 12737 A 3063 3063
52 South_Africa 12738 C 3063 3063
53 South_Africa 12739 T 3063 3063
54 South_Africa 12740 A 3063 3063
55 South_Africa 12741 C T,A 3063 3061 Thr4159Ile-p.Thr4159Lys
56 South_Africa 12742 A 3063 3063
57 South_Africa 12743 C 3063 3063
58 South_Africa 12744 A 3063 3063
59 South_Africa 12745 A 3063 3063
60 South_Africa 12746 A 3063 3063
61 South_Africa 12747 C T 3063 3060 Thr4161Ile
62 South_Africa 12748 T 3063 3063
63 South_Africa 12749 G 3063 3063
64 South_Africa 12750 C 3063 3063
65 South_Africa 12751 T 3063 3063
66 South_Africa 12752 T 3063 3063
67 South_Africa 12753 G 3063 3063
68 South_Africa 12754 C 3063 3063
69 South_Africa 12755 A 3063 3063
70 South_Africa 12756 C 3063 3063
71 South_Africa 12757 T 3063 3063
72 South_Africa 12758 G 3063 3063
73 South_Africa 12759 A 3063 3063
74 South_Africa 12760 T 3063 3063
75 South_Africa 12761 G 3063 3063
76 South_Africa 12762 A 3063 3063
77 South_Africa 12763 C 3063 3063
78 South_Africa 12764 A 3063 3063
79 South_Africa 12765 A 3063 3063
80 South_Africa 12766 T 3063 3063
81 South_Africa 12767 G 3063 3063
82 South_Africa 12768 C 3063 3063
83 South_Africa 12769 G T 3063 3044 Ala4168Ala
84 South_Africa 12770 T 3064 3064
85 South_Africa 12771 T 3064 3064
86 South_Africa 12772 A 3064 3064
87 South_Africa 12773 G 3064 3064
88 South_Africa 12774 C 3064 3064
89 South_Africa 12775 T 3064 3064
90 South_Africa 12776 T 3064 3064
91 South_Africa 12777 A 3064 3064
92 South_Africa 12778 C 3064 3064
93 South_Africa 12779 T 3064 3064
94 South_Africa 12780 A 3064 3064
95 South_Africa 12781 C T 3064 3059 Tyr4172Tyr
96 South_Africa 12782 A 3064 3064
97 South_Africa 12783 A 3064 3064
98 South_Africa 12784 C 3064 3064
99 South_Africa 12785 A 3064 3064
100 South_Africa 12786 C 3064 3064
101 South_Africa 12787 A 3064 3064
102 South_Africa 12788 A 3064 3064
103 South_Africa 12789 C T 3064 3057 Thr4175Ile
104 South_Africa 12790 A 3064 3064
105 South_Africa 12791 A 3064 3064
106 South_Africa 12792 A G 3064 3061 Lys4176Arg
107 South_Africa 12793 G T 3064 3063 Lys4176Asn
108 South_Africa 12794 G 3064 3064
109 South_Africa 12795 G 3064 3064
110 South_Africa 12796 A 3064 3064
111 South_Africa 12797 G 3064 3063
112 South_Africa 12798 G 3063 3062
113 South_Africa 12799 T 3063 3062
114 South_Africa 12800 A 3062 3061
115 South_Africa 12801 G 3062 3061
116 South_Africa 12802 G 3062 3061
117 South_Africa 12803 T C 3062 3060 Phe4180Leu
118 South_Africa 12804 T G 3062 3060 Phe4180Cys
119 South_Africa 12805 T 3062 3061
120 South_Africa 12806 G 3062 3061
121 South_Africa 12807 T 3062 3061
122 South_Africa 12808 A 3062 3061
123 South_Africa 12809 C T 3062 3060 Leu4182Phe
124 South_Africa 12810 T 3062 3061
125 South_Africa 12811 T 3062 3061
126 South_Africa 12812 G 3062 3061
127 South_Africa 12813 C 3062 3061
128 South_Africa 12814 A 3062 3061
129 South_Africa 12815 C 3062 3062
130 South_Africa 12816 T 3062 3062
131 South_Africa 12817 G 3062 3062
132 South_Africa 12818 T 3062 3062
133 South_Africa 12819 T 3062 3062
134 South_Africa 12820 A 3062 3062
135 South_Africa 12821 T 3062 3062
136 South_Africa 12822 C 3062 3062
137 South_Africa 12823 C T 3062 3061 Ser4186Ser
138 South_Africa 12824 G 3062 3062
139 South_Africa 12825 A 3062 3062
140 South_Africa 12826 T 3062 3062
141 South_Africa 12827 T 3062 3062
142 South_Africa 12828 T C 3062 3061 Leu4188Ser
143 South_Africa 12829 A 3062 3062
144 South_Africa 12830 C 3062 3062
145 South_Africa 12831 A 3062 3062
146 South_Africa 12832 G 3062 3062
147 South_Africa 12833 G 3062 3062
148 South_Africa 12834 A 3062 3062
149 South_Africa 12835 T 3062 3062
150 South_Africa 12836 T 3062 3062
151 South_Africa 12837 T 3062 3062
152 South_Africa 12838 G 3062 3062
153 South_Africa 12839 A 3062 3062
154 South_Africa 12840 A 3062 3062
155 South_Africa 12841 A 3062 3062
156 South_Africa 12842 T 3062 3062
157 South_Africa 12843 G 3062 3062
158 South_Africa 12844 G 3062 3062
159 South_Africa 12845 G 3062 3062
160 South_Africa 12846 C 3062 3062
161 South_Africa 12847 T 3062 3062
162 South_Africa 12848 A 3062 3062
163 South_Africa 12849 G 3062 3062
164 South_Africa 12850 A G 3062 3061 Arg4195Arg
165 South_Africa 12851 T 3062 3062
166 South_Africa 12852 T 3062 3062
167 South_Africa 12853 C T 3062 3060 Phe4196Phe
168 South_Africa 12854 C 3062 3062
169 South_Africa 12855 C 3062 3062
170 South_Africa 12856 T 3062 3062
171 South_Africa 12857 A 3062 3062
172 South_Africa 12858 A 3062 3062
173 South_Africa 12859 G 3062 3062
174 South_Africa 12860 A 3062 3062
175 South_Africa 12861 G 3062 3062
176 South_Africa 12862 T G 3062 3061 Ser4199Arg
177 South_Africa 12863 G A 3062 3059 Asp4200Asn
178 South_Africa 12864 A 3062 3062
179 South_Africa 12865 T 3062 3062
180 South_Africa 12866 G 3062 3062
181 South_Africa 12867 G 3062 3062
182 South_Africa 12868 A 3062 3062
183 South_Africa 12869 A 3062 3062
184 South_Africa 12870 C 3062 3062
185 South_Africa 12871 T 3062 3062
186 South_Africa 12872 G 3062 3062
187 South_Africa 12873 G 3062 3062
188 South_Africa 12874 T 3062 3062
189 South_Africa 12875 A 3062 3062
190 South_Africa 12876 C 3062 3062
191 South_Africa 12877 T 3062 3062
192 South_Africa 12878 A 3062 3062
193 South_Africa 12879 T 3062 3062
194 South_Africa 12880 C T 3062 3040 Ile4205Ile
195 South_Africa 12881 T 3062 3062
196 South_Africa 12882 A 3062 3062
197 South_Africa 12883 T 3061 3061
198 South_Africa 12884 A 3061 3060
199 South_Africa 12885 C T 3061 3060 Thr4207Ile
200 South_Africa 12886 A 3061 3061
201 South_Africa 12887 G 3061 3061
202 South_Africa 12888 A 3061 3061
203 South_Africa 12889 A 3061 3061
204 South_Africa 12890 C 3061 3061
205 South_Africa 12891 T 3061 3061
206 South_Africa 12892 G 3061 3061
207 South_Africa 12893 G 3061 3061
208 South_Africa 12894 A 3061 3061
209 South_Africa 12895 A 3061 3061
210 South_Africa 12896 C T 3061 3060 Pro4211Ser
211 South_Africa 12897 C 3061 3061
212 South_Africa 12898 A 3061 3061
213 South_Africa 12899 C 3061 3061
214 South_Africa 12900 C 3061 3061
215 South_Africa 12901 T 3061 3061
216 South_Africa 12902 T 3061 3061
217 South_Africa 12903 G 3061 3061
218 South_Africa 12904 T 3061 3061
219 South_Africa 12905 A 3061 3061
220 South_Africa 12906 G 3061 3061
221 South_Africa 12907 G 3061 3061
222 South_Africa 12908 T 3061 3061
223 South_Africa 12909 T 3061 3061
224 South_Africa 12910 T 3061 3061
225 South_Africa 12911 G 3061 3061
226 South_Africa 12912 T 3061 3061
227 South_Africa 12913 T 3061 3061
228 South_Africa 12914 A 3061 3061
229 South_Africa 12915 C 3061 3061
230 South_Africa 12916 A 3061 3060
231 South_Africa 12917 G 3061 3060
232 South_Africa 12918 A 3061 3060
233 South_Africa 12919 C T 3061 3057 Asp4218Asp
234 South_Africa 12920 A 3061 3060
235 South_Africa 12921 C 3062 3061
236 South_Africa 12922 A 3062 3061
237 South_Africa 12923 C 3062 3062
238 South_Africa 12924 C T 3062 3058 Pro4220Leu
239 South_Africa 12925 T 3062 3062
240 South_Africa 12926 A 3062 3062
241 South_Africa 12927 A 3062 3062
242 South_Africa 12928 A 3062 3062
243 South_Africa 12929 G 3062 3062
244 South_Africa 12930 G 3062 3062
245 South_Africa 12931 T 3062 3062
246 South_Africa 12932 C T 3062 3061 Pro4223Ser
247 South_Africa 12933 C 3062 3062
248 South_Africa 12934 T 3062 3062
249 South_Africa 12935 A 3062 3062
250 South_Africa 12936 A 3062 3062
251 South_Africa 12937 A 3062 3062
252 South_Africa 12938 G 3062 3062
253 South_Africa 12939 T 3061 3061
254 South_Africa 12940 G 3061 3061
255 South_Africa 12941 A 3061 3061
256 South_Africa 12942 A 3061 3061
257 South_Africa 12943 G 3061 3061
258 South_Africa 12944 T 3061 3061
259 South_Africa 12945 A 3061 3061
260 South_Africa 12946 T 3061 3061
261 South_Africa 12947 T 3061 3061
262 South_Africa 12948 T 3061 3061
263 South_Africa 12949 A 3061 3061
264 South_Africa 12950 T 3061 3061
265 South_Africa 12951 A 3061 3061
266 South_Africa 12952 C 3061 3061
267 South_Africa 12953 T 3061 3061
268 South_Africa 12954 T 3061 3061
269 South_Africa 12955 T 3061 3061
270 South_Africa 12956 A 3061 3061
271 South_Africa 12957 T 3061 3061
272 South_Africa 12958 T 3061 3061
273 South_Africa 12959 A 3061 3061
274 South_Africa 12960 A 3061 3061
275 South_Africa 12961 A 3061 3061
276 South_Africa 12962 G 3061 3061
277 South_Africa 12963 G 3061 3061
278 South_Africa 12964 A G 3061 3060 Gly4233Gly
279 South_Africa 12965 T C 3061 3059 Leu4234Leu
280 South_Africa 12966 T 3061 3061
281 South_Africa 12967 A 3061 3061
282 South_Africa 12968 A 3061 3061
283 South_Africa 12969 A 3061 3061
284 South_Africa 12970 C T 3061 3060 Asn4235Asn
285 South_Africa 12971 A 3061 3061
286 South_Africa 12972 A 3061 3061
287 South_Africa 12973 C 3061 3061
288 South_Africa 12974 C 3061 3061
289 South_Africa 12975 T 3061 3061
290 South_Africa 12976 A 3061 3061
291 South_Africa 12977 A 3061 3061
292 South_Africa 12978 A 3061 3061
293 South_Africa 12979 T 3061 3061
294 South_Africa 12980 A 3061 3061
295 South_Africa 12981 G 3061 3061
296 South_Africa 12982 A 3061 3061
297 South_Africa 12983 G 3061 3061
298 South_Africa 12984 G 3061 3061
299 South_Africa 12985 T 3061 3061
300 South_Africa 12986 A 3061 3061
301 South_Africa 12987 T 3061 3061
302 South_Africa 12988 G A 3061 3060 Met4241Ile
303 South_Africa 12989 G 3061 3061
304 South_Africa 12990 T 3061 3061
305 South_Africa 12991 A 3061 3061
306 South_Africa 12992 C 3061 3061
307 South_Africa 12993 T 3061 3061
308 South_Africa 12994 T 3061 3061
309 South_Africa 12995 G 3060 3060
310 South_Africa 12996 G 3060 3060
311 South_Africa 12997 T 3060 3060
312 South_Africa 12998 A 3060 3060
313 South_Africa 12999 G 3060 3060
314 South_Africa 13000 T 3060 3060
315 South_Africa 13001 T 3060 3060
316 South_Africa 13002 T 3060 3060
317 South_Africa 13003 A 3060 3060
318 South_Africa 13004 G 3060 3060
319 South_Africa 13005 C 3060 3060
320 South_Africa 13006 T 3060 3060
321 South_Africa 13007 G 3060 3060
322 South_Africa 13008 C 3060 3060
323 South_Africa 13009 C 3060 3060
324 South_Africa 13010 A 3060 3060
325 South_Africa 13011 C T 3060 3059 Thr4249Ile
326 South_Africa 13012 A 3060 3059
327 South_Africa 13013 G 3060 3059
328 South_Africa 13014 T 3060 3059
329 South_Africa 13015 A 3060 3059
330 South_Africa 13016 C 3060 3059
331 South_Africa 13017 G 3060 3059
332 South_Africa 13018 T 3060 3060
333 South_Africa 13019 C 3060 3060
334 South_Africa 13020 T 3060 3060
335 South_Africa 13021 A 3060 3060
336 South_Africa 13022 C 3060 3060
337 South_Africa 13023 A 3060 3060
338 South_Africa 13024 A 3060 3060