National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                                    
C   9                                      
D   18                     1                
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6             1                        
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36             1                 1      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Slovakia 12686 A 96 96
1 Slovakia 12687 A 96 96
2 Slovakia 12688 T 96 96
3 Slovakia 12689 A 96 96
4 Slovakia 12690 A 96 96
5 Slovakia 12691 T 96 96
6 Slovakia 12692 G 96 96
7 Slovakia 12693 A 96 96
8 Slovakia 12694 G 96 96
9 Slovakia 12695 C 96 96
10 Slovakia 12696 T 96 96
11 Slovakia 12697 T 96 96
12 Slovakia 12698 A 96 96
13 Slovakia 12699 G 96 96
14 Slovakia 12700 T 96 96
15 Slovakia 12701 C 96 96
16 Slovakia 12702 C 96 96
17 Slovakia 12703 T 96 96
18 Slovakia 12704 G 96 96
19 Slovakia 12705 T 96 96
20 Slovakia 12706 T 96 96
21 Slovakia 12707 G 96 96
22 Slovakia 12708 C 96 96
23 Slovakia 12709 A 96 96
24 Slovakia 12710 C 96 96
25 Slovakia 12711 T 96 96
26 Slovakia 12712 A 96 96
27 Slovakia 12713 C 96 96
28 Slovakia 12714 G 96 96
29 Slovakia 12715 A 96 96
30 Slovakia 12716 C 96 96
31 Slovakia 12717 A 96 96
32 Slovakia 12718 G 96 96
33 Slovakia 12719 A 96 96
34 Slovakia 12720 T 96 96
35 Slovakia 12721 G 96 96
36 Slovakia 12722 T 96 96
37 Slovakia 12723 C 96 96
38 Slovakia 12724 T 96 96
39 Slovakia 12725 T 96 96
40 Slovakia 12726 G 96 96
41 Slovakia 12727 T 96 96
42 Slovakia 12728 G 96 96
43 Slovakia 12729 C 96 96
44 Slovakia 12730 T 96 96
45 Slovakia 12731 G 96 96
46 Slovakia 12732 C 96 96
47 Slovakia 12733 C A 96 94 Ala4156Ala
48 Slovakia 12734 G 96 96
49 Slovakia 12735 G 96 96
50 Slovakia 12736 T 96 96
51 Slovakia 12737 A 96 96
52 Slovakia 12738 C 96 96
53 Slovakia 12739 T 96 96
54 Slovakia 12740 A 96 96
55 Slovakia 12741 C 96 96
56 Slovakia 12742 A 96 96
57 Slovakia 12743 C 96 96
58 Slovakia 12744 A 96 96
59 Slovakia 12745 A 96 96
60 Slovakia 12746 A 96 96
61 Slovakia 12747 C T 96 95 Thr4161Ile
62 Slovakia 12748 T 96 96
63 Slovakia 12749 G 96 96
64 Slovakia 12750 C 96 96
65 Slovakia 12751 T 96 96
66 Slovakia 12752 T 96 96
67 Slovakia 12753 G 96 96
68 Slovakia 12754 C 96 96
69 Slovakia 12755 A 96 96
70 Slovakia 12756 C 96 96
71 Slovakia 12757 T 96 96
72 Slovakia 12758 G 96 96
73 Slovakia 12759 A 96 96
74 Slovakia 12760 T 96 96
75 Slovakia 12761 G 96 96
76 Slovakia 12762 A 96 96
77 Slovakia 12763 C 96 96
78 Slovakia 12764 A 96 96
79 Slovakia 12765 A 96 96
80 Slovakia 12766 T 96 96
81 Slovakia 12767 G 96 96
82 Slovakia 12768 C 96 96
83 Slovakia 12769 G 96 96
84 Slovakia 12770 T 96 96
85 Slovakia 12771 T 96 96
86 Slovakia 12772 A 96 96
87 Slovakia 12773 G 96 96
88 Slovakia 12774 C 96 96
89 Slovakia 12775 T 96 96
90 Slovakia 12776 T 96 96
91 Slovakia 12777 A 96 96
92 Slovakia 12778 C 96 96
93 Slovakia 12779 T 96 96
94 Slovakia 12780 A 96 96
95 Slovakia 12781 C 96 96
96 Slovakia 12782 A 96 96
97 Slovakia 12783 A 96 96
98 Slovakia 12784 C 96 96
99 Slovakia 12785 A 96 96
100 Slovakia 12786 C 96 96
101 Slovakia 12787 A 96 96
102 Slovakia 12788 A 96 96
103 Slovakia 12789 C 96 96
104 Slovakia 12790 A 96 96
105 Slovakia 12791 A 96 96
106 Slovakia 12792 A 96 96
107 Slovakia 12793 G 96 96
108 Slovakia 12794 G 96 96
109 Slovakia 12795 G 96 96
110 Slovakia 12796 A 96 96
111 Slovakia 12797 G 96 96
112 Slovakia 12798 G 96 96
113 Slovakia 12799 T 96 96
114 Slovakia 12800 A 96 96
115 Slovakia 12801 G 96 96
116 Slovakia 12802 G 96 96
117 Slovakia 12803 T 96 96
118 Slovakia 12804 T 96 96
119 Slovakia 12805 T 96 96
120 Slovakia 12806 G 96 96
121 Slovakia 12807 T 96 96
122 Slovakia 12808 A 96 96
123 Slovakia 12809 C 96 96
124 Slovakia 12810 T 96 96
125 Slovakia 12811 T 96 96
126 Slovakia 12812 G 96 96
127 Slovakia 12813 C 96 96
128 Slovakia 12814 A 96 96
129 Slovakia 12815 C 96 96
130 Slovakia 12816 T 96 96
131 Slovakia 12817 G 96 96
132 Slovakia 12818 T 96 96
133 Slovakia 12819 T 96 96
134 Slovakia 12820 A 96 96
135 Slovakia 12821 T 96 96
136 Slovakia 12822 C 96 96
137 Slovakia 12823 C 96 96
138 Slovakia 12824 G A 96 87 Asp4187Asn
139 Slovakia 12825 A 96 96
140 Slovakia 12826 T 96 96
141 Slovakia 12827 T 96 96
142 Slovakia 12828 T 96 96
143 Slovakia 12829 A 96 96
144 Slovakia 12830 C 96 96
145 Slovakia 12831 A 96 96
146 Slovakia 12832 G 96 96
147 Slovakia 12833 G 96 96
148 Slovakia 12834 A 96 96
149 Slovakia 12835 T 96 96
150 Slovakia 12836 T 96 96
151 Slovakia 12837 T 96 96
152 Slovakia 12838 G 96 96
153 Slovakia 12839 A 96 96
154 Slovakia 12840 A 96 96
155 Slovakia 12841 A 96 96
156 Slovakia 12842 T 96 96
157 Slovakia 12843 G 96 96
158 Slovakia 12844 G 96 96
159 Slovakia 12845 G 96 96
160 Slovakia 12846 C 96 96
161 Slovakia 12847 T 96 96
162 Slovakia 12848 A 96 96
163 Slovakia 12849 G 96 96
164 Slovakia 12850 A 96 96
165 Slovakia 12851 T 96 96
166 Slovakia 12852 T 96 96
167 Slovakia 12853 C 96 96
168 Slovakia 12854 C 96 96
169 Slovakia 12855 C 96 96
170 Slovakia 12856 T 96 96
171 Slovakia 12857 A 96 96
172 Slovakia 12858 A 96 96
173 Slovakia 12859 G 96 96
174 Slovakia 12860 A 96 96
175 Slovakia 12861 G 96 96
176 Slovakia 12862 T 96 96
177 Slovakia 12863 G 96 96
178 Slovakia 12864 A 96 96
179 Slovakia 12865 T 96 96
180 Slovakia 12866 G 96 96
181 Slovakia 12867 G 96 96
182 Slovakia 12868 A 96 96
183 Slovakia 12869 A 96 96
184 Slovakia 12870 C 96 96
185 Slovakia 12871 T 96 96
186 Slovakia 12872 G 96 96
187 Slovakia 12873 G 96 96
188 Slovakia 12874 T 96 96
189 Slovakia 12875 A 96 96
190 Slovakia 12876 C 96 96
191 Slovakia 12877 T 96 96
192 Slovakia 12878 A 96 96
193 Slovakia 12879 T 96 96
194 Slovakia 12880 C 96 96
195 Slovakia 12881 T 96 96
196 Slovakia 12882 A 96 96
197 Slovakia 12883 T 96 96
198 Slovakia 12884 A 96 96
199 Slovakia 12885 C 96 96
200 Slovakia 12886 A G 96 94 Thr4207Thr
201 Slovakia 12887 G 96 96
202 Slovakia 12888 A 96 96
203 Slovakia 12889 A 96 96
204 Slovakia 12890 C 96 96
205 Slovakia 12891 T 96 96
206 Slovakia 12892 G 96 96
207 Slovakia 12893 G 96 96
208 Slovakia 12894 A 96 96
209 Slovakia 12895 A 96 96
210 Slovakia 12896 C 96 96
211 Slovakia 12897 C 96 96
212 Slovakia 12898 A 96 96
213 Slovakia 12899 C 96 96
214 Slovakia 12900 C 96 96
215 Slovakia 12901 T 96 96
216 Slovakia 12902 T 96 96
217 Slovakia 12903 G 96 96
218 Slovakia 12904 T 96 96
219 Slovakia 12905 A 96 96
220 Slovakia 12906 G 96 96
221 Slovakia 12907 G 96 96
222 Slovakia 12908 T 96 96
223 Slovakia 12909 T 96 96
224 Slovakia 12910 T 96 96
225 Slovakia 12911 G 96 96
226 Slovakia 12912 T 96 96
227 Slovakia 12913 T 96 96
228 Slovakia 12914 A 96 96
229 Slovakia 12915 C 96 96
230 Slovakia 12916 A 96 96
231 Slovakia 12917 G 96 96
232 Slovakia 12918 A 96 96
233 Slovakia 12919 C 96 96
234 Slovakia 12920 A 96 96
235 Slovakia 12921 C 96 96
236 Slovakia 12922 A 96 96
237 Slovakia 12923 C 96 96
238 Slovakia 12924 C 96 96
239 Slovakia 12925 T 96 96
240 Slovakia 12926 A 96 96
241 Slovakia 12927 A 96 96
242 Slovakia 12928 A 96 96
243 Slovakia 12929 G 96 96
244 Slovakia 12930 G 96 96
245 Slovakia 12931 T 96 96
246 Slovakia 12932 C 96 96
247 Slovakia 12933 C 96 96
248 Slovakia 12934 T 96 96
249 Slovakia 12935 A 96 96
250 Slovakia 12936 A 96 96
251 Slovakia 12937 A 96 96
252 Slovakia 12938 G 96 96
253 Slovakia 12939 T 96 96
254 Slovakia 12940 G 96 96
255 Slovakia 12941 A 96 96
256 Slovakia 12942 A 96 96
257 Slovakia 12943 G 96 96
258 Slovakia 12944 T 96 96
259 Slovakia 12945 A 96 96
260 Slovakia 12946 T 96 96
261 Slovakia 12947 T 96 96
262 Slovakia 12948 T 96 96
263 Slovakia 12949 A 96 96
264 Slovakia 12950 T 96 96
265 Slovakia 12951 A 96 96
266 Slovakia 12952 C 96 96
267 Slovakia 12953 T 96 96
268 Slovakia 12954 T 96 96
269 Slovakia 12955 T 96 96
270 Slovakia 12956 A 96 96
271 Slovakia 12957 T 96 96
272 Slovakia 12958 T 96 96
273 Slovakia 12959 A 96 96
274 Slovakia 12960 A 96 96
275 Slovakia 12961 A 96 96
276 Slovakia 12962 G 96 96
277 Slovakia 12963 G 96 96
278 Slovakia 12964 A 96 96
279 Slovakia 12965 T 96 96
280 Slovakia 12966 T 96 96
281 Slovakia 12967 A 96 96
282 Slovakia 12968 A 96 96
283 Slovakia 12969 A 96 96
284 Slovakia 12970 C 96 96
285 Slovakia 12971 A 96 96
286 Slovakia 12972 A 96 96
287 Slovakia 12973 C 96 96
288 Slovakia 12974 C 96 96
289 Slovakia 12975 T 96 96
290 Slovakia 12976 A 96 96
291 Slovakia 12977 A 96 96
292 Slovakia 12978 A 96 96
293 Slovakia 12979 T 96 96
294 Slovakia 12980 A 96 96
295 Slovakia 12981 G 96 96
296 Slovakia 12982 A 96 96
297 Slovakia 12983 G 96 96
298 Slovakia 12984 G 96 96
299 Slovakia 12985 T 96 96
300 Slovakia 12986 A 96 96
301 Slovakia 12987 T 96 96
302 Slovakia 12988 G T 96 87 Met4241Ile
303 Slovakia 12989 G 96 96
304 Slovakia 12990 T 96 96
305 Slovakia 12991 A 96 96
306 Slovakia 12992 C 96 96
307 Slovakia 12993 T 96 96
308 Slovakia 12994 T 96 96
309 Slovakia 12995 G 96 96
310 Slovakia 12996 G 96 96
311 Slovakia 12997 T 96 96
312 Slovakia 12998 A 96 96
313 Slovakia 12999 G 96 96
314 Slovakia 13000 T 96 96
315 Slovakia 13001 T 96 96
316 Slovakia 13002 T 96 96
317 Slovakia 13003 A 96 96
318 Slovakia 13004 G 96 96
319 Slovakia 13005 C 96 96
320 Slovakia 13006 T 96 96
321 Slovakia 13007 G 96 96
322 Slovakia 13008 C 96 96
323 Slovakia 13009 C 96 96
324 Slovakia 13010 A 96 96
325 Slovakia 13011 C 96 96
326 Slovakia 13012 A 96 96
327 Slovakia 13013 G 96 96
328 Slovakia 13014 T 96 96
329 Slovakia 13015 A 96 96
330 Slovakia 13016 C 96 96
331 Slovakia 13017 G 96 96
332 Slovakia 13018 T 96 96
333 Slovakia 13019 C 96 96
334 Slovakia 13020 T 96 96
335 Slovakia 13021 A 96 96
336 Slovakia 13022 C 96 96
337 Slovakia 13023 A 96 96
338 Slovakia 13024 A 96 96