National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 3                             1      
C   9                                      
D   18     1                                
E   9                                      
F   12                                      
G   27           2                          
I   6             1                   1    
K   21                                      
L   45                 5                    
M   6             1                 1      
N   21                     1                
P   18                 3                    
Q   12                                      
R   18                           1          
S   15                             1        
T   36             2                 1      
V   18                                      
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Singapore 12686 A 1731 1731
1 Singapore 12687 A 1731 1731
2 Singapore 12688 T 1731 1731
3 Singapore 12689 A 1731 1731
4 Singapore 12690 A 1731 1731
5 Singapore 12691 T 1731 1731
6 Singapore 12692 G 1731 1731
7 Singapore 12693 A 1731 1731
8 Singapore 12694 G 1731 1731
9 Singapore 12695 C 1731 1731
10 Singapore 12696 T 1731 1731
11 Singapore 12697 T 1731 1731
12 Singapore 12698 A 1731 1731
13 Singapore 12699 G 1731 1731
14 Singapore 12700 T 1731 1731
15 Singapore 12701 C 1731 1731
16 Singapore 12702 C 1731 1731
17 Singapore 12703 T 1731 1731
18 Singapore 12704 G 1731 1731
19 Singapore 12705 T 1731 1731
20 Singapore 12706 T 1731 1731
21 Singapore 12707 G 1731 1731
22 Singapore 12708 C 1731 1731
23 Singapore 12709 A 1731 1731
24 Singapore 12710 C 1731 1731
25 Singapore 12711 T 1731 1731
26 Singapore 12712 A 1731 1731
27 Singapore 12713 C 1731 1731
28 Singapore 12714 G 1731 1730
29 Singapore 12715 A 1731 1731
30 Singapore 12716 C 1731 1731
31 Singapore 12717 A 1731 1731
32 Singapore 12718 G 1731 1731
33 Singapore 12719 A 1731 1731
34 Singapore 12720 T 1731 1731
35 Singapore 12721 G 1731 1731
36 Singapore 12722 T 1731 1731
37 Singapore 12723 C 1731 1731
38 Singapore 12724 T 1731 1731
39 Singapore 12725 T 1731 1731
40 Singapore 12726 G 1731 1731
41 Singapore 12727 T 1731 1731
42 Singapore 12728 G 1731 1731
43 Singapore 12729 C 1731 1731
44 Singapore 12730 T 1731 1731
45 Singapore 12731 G 1731 1731
46 Singapore 12732 C 1731 1731
47 Singapore 12733 C 1731 1731
48 Singapore 12734 G 1731 1731
49 Singapore 12735 G 1731 1731
50 Singapore 12736 T 1731 1731
51 Singapore 12737 A 1731 1731
52 Singapore 12738 C 1731 1731
53 Singapore 12739 T 1731 1731
54 Singapore 12740 A 1731 1731
55 Singapore 12741 C T 1731 1729 Thr4159Ile
56 Singapore 12742 A 1731 1731
57 Singapore 12743 C 1731 1731
58 Singapore 12744 A 1731 1731
59 Singapore 12745 A 1731 1731
60 Singapore 12746 A 1731 1731
61 Singapore 12747 C 1731 1731
62 Singapore 12748 T A 1731 1730 Thr4161Thr
63 Singapore 12749 G 1731 1731
64 Singapore 12750 C 1731 1731
65 Singapore 12751 T 1731 1731
66 Singapore 12752 T 1731 1731
67 Singapore 12753 G 1731 1731
68 Singapore 12754 C 1731 1731
69 Singapore 12755 A 1731 1731
70 Singapore 12756 C 1731 1730
71 Singapore 12757 T 1731 1731
72 Singapore 12758 G 1731 1731
73 Singapore 12759 A 1731 1731
74 Singapore 12760 T 1731 1731
75 Singapore 12761 G 1731 1731
76 Singapore 12762 A 1731 1731
77 Singapore 12763 C T 1731 1730 Asp4166Asp
78 Singapore 12764 A 1731 1731
79 Singapore 12765 A 1731 1731
80 Singapore 12766 T 1731 1731
81 Singapore 12767 G 1731 1731
82 Singapore 12768 C 1731 1731
83 Singapore 12769 G T 1731 1730 Ala4168Ala
84 Singapore 12770 T 1731 1731
85 Singapore 12771 T 1731 1731
86 Singapore 12772 A 1731 1731
87 Singapore 12773 G 1731 1731
88 Singapore 12774 C 1731 1731
89 Singapore 12775 T G,C 1731 1729 Ala4170Ala-p.Ala4170Ala
90 Singapore 12776 T 1731 1731
91 Singapore 12777 A 1731 1731
92 Singapore 12778 C 1731 1731
93 Singapore 12779 T 1731 1731
94 Singapore 12780 A 1731 1731
95 Singapore 12781 C T 1731 1730 Tyr4172Tyr
96 Singapore 12782 A 1731 1731
97 Singapore 12783 A 1731 1731
98 Singapore 12784 C 1731 1731
99 Singapore 12785 A 1731 1731
100 Singapore 12786 C T 1731 1730 Thr4174Ile
101 Singapore 12787 A 1731 1731
102 Singapore 12788 A 1731 1731
103 Singapore 12789 C 1731 1731
104 Singapore 12790 A 1731 1731
105 Singapore 12791 A 1731 1731
106 Singapore 12792 A 1731 1731
107 Singapore 12793 G 1731 1731
108 Singapore 12794 G 1731 1731
109 Singapore 12795 G 1731 1731
110 Singapore 12796 A 1731 1731
111 Singapore 12797 G 1731 1731
112 Singapore 12798 G 1731 1731
113 Singapore 12799 T 1731 1731
114 Singapore 12800 A 1731 1731
115 Singapore 12801 G 1731 1731
116 Singapore 12802 G 1731 1731
117 Singapore 12803 T 1731 1731
118 Singapore 12804 T 1731 1731
119 Singapore 12805 T 1731 1731
120 Singapore 12806 G 1731 1731
121 Singapore 12807 T 1731 1731
122 Singapore 12808 A 1731 1731
123 Singapore 12809 C 1731 1731
124 Singapore 12810 T 1731 1731
125 Singapore 12811 T 1731 1731
126 Singapore 12812 G 1731 1731
127 Singapore 12813 C 1731 1731
128 Singapore 12814 A 1731 1731
129 Singapore 12815 C T 1731 1729 Leu4184Leu
130 Singapore 12816 T 1731 1731
131 Singapore 12817 G 1731 1731
132 Singapore 12818 T 1731 1731
133 Singapore 12819 T 1731 1731
134 Singapore 12820 A G 1731 1729 Leu4185Leu
135 Singapore 12821 T 1731 1731
136 Singapore 12822 C 1731 1731
137 Singapore 12823 C T 1731 1729 Ser4186Ser
138 Singapore 12824 G 1731 1731
139 Singapore 12825 A 1731 1731
140 Singapore 12826 T 1731 1731
141 Singapore 12827 T 1731 1731
142 Singapore 12828 T 1731 1731
143 Singapore 12829 A 1731 1731
144 Singapore 12830 C 1731 1731
145 Singapore 12831 A 1731 1731
146 Singapore 12832 G 1731 1731
147 Singapore 12833 G 1731 1731
148 Singapore 12834 A 1731 1731
149 Singapore 12835 T 1731 1731
150 Singapore 12836 T 1731 1731
151 Singapore 12837 T 1731 1731
152 Singapore 12838 G 1731 1731
153 Singapore 12839 A 1731 1731
154 Singapore 12840 A 1731 1731
155 Singapore 12841 A 1731 1731
156 Singapore 12842 T 1731 1731
157 Singapore 12843 G 1731 1731
158 Singapore 12844 G 1731 1731
159 Singapore 12845 G 1731 1731
160 Singapore 12846 C 1731 1731
161 Singapore 12847 T 1731 1731
162 Singapore 12848 A C 1731 1729 Arg4195Arg
163 Singapore 12849 G 1731 1731
164 Singapore 12850 A 1731 1731
165 Singapore 12851 T 1731 1731
166 Singapore 12852 T 1731 1731
167 Singapore 12853 C 1731 1731
168 Singapore 12854 C 1731 1731
169 Singapore 12855 C T 1731 1730 Pro4197Leu
170 Singapore 12856 T 1731 1731
171 Singapore 12857 A 1731 1731
172 Singapore 12858 A 1731 1731
173 Singapore 12859 G 1731 1731
174 Singapore 12860 A 1731 1731
175 Singapore 12861 G 1731 1731
176 Singapore 12862 T 1731 1731
177 Singapore 12863 G 1731 1730
178 Singapore 12864 A 1731 1731
179 Singapore 12865 T 1731 1731
180 Singapore 12866 G 1731 1731
181 Singapore 12867 G 1731 1731
182 Singapore 12868 A G 1731 1730 Gly4201Gly
183 Singapore 12869 A 1731 1731
184 Singapore 12870 C 1731 1731
185 Singapore 12871 T 1731 1731
186 Singapore 12872 G 1731 1731
187 Singapore 12873 G 1731 1731
188 Singapore 12874 T 1731 1731
189 Singapore 12875 A 1731 1731
190 Singapore 12876 C 1731 1731
191 Singapore 12877 T 1731 1729
192 Singapore 12878 A G 1731 1730 Ile4205Val
193 Singapore 12879 T 1731 1731
194 Singapore 12880 C T 1731 1717 Ile4205Ile
195 Singapore 12881 T 1731 1731
196 Singapore 12882 A 1731 1731
197 Singapore 12883 T 1731 1731
198 Singapore 12884 A 1731 1731
199 Singapore 12885 C 1731 1731
200 Singapore 12886 A 1731 1731
201 Singapore 12887 G 1731 1731
202 Singapore 12888 A 1731 1731
203 Singapore 12889 A 1731 1731
204 Singapore 12890 C 1731 1731
205 Singapore 12891 T 1731 1731
206 Singapore 12892 G 1731 1731
207 Singapore 12893 G 1731 1731
208 Singapore 12894 A 1731 1731
209 Singapore 12895 A 1731 1731
210 Singapore 12896 C 1731 1731
211 Singapore 12897 C T 1731 1730 Pro4211Leu
212 Singapore 12898 A 1731 1731
213 Singapore 12899 C 1731 1731
214 Singapore 12900 C 1731 1731
215 Singapore 12901 T 1731 1731
216 Singapore 12902 T 1731 1731
217 Singapore 12903 G 1731 1731
218 Singapore 12904 T 1731 1731
219 Singapore 12905 A 1731 1731
220 Singapore 12906 G 1731 1731
221 Singapore 12907 G 1731 1731
222 Singapore 12908 T 1731 1731
223 Singapore 12909 T 1731 1731
224 Singapore 12910 T 1731 1731
225 Singapore 12911 G 1731 1731
226 Singapore 12912 T 1731 1731
227 Singapore 12913 T 1731 1731
228 Singapore 12914 A 1731 1731
229 Singapore 12915 C 1731 1731
230 Singapore 12916 A 1731 1731
231 Singapore 12917 G 1731 1731
232 Singapore 12918 A 1731 1731
233 Singapore 12919 C 1731 1731
234 Singapore 12920 A 1731 1731
235 Singapore 12921 C 1731 1731
236 Singapore 12922 A 1731 1731
237 Singapore 12923 C 1731 1731
238 Singapore 12924 C 1731 1731
239 Singapore 12925 T 1731 1731
240 Singapore 12926 A 1731 1731
241 Singapore 12927 A 1731 1731
242 Singapore 12928 A 1731 1731
243 Singapore 12929 G 1731 1731
244 Singapore 12930 G 1731 1731
245 Singapore 12931 T 1731 1731
246 Singapore 12932 C 1731 1731
247 Singapore 12933 C T 1731 1730 Pro4223Leu
248 Singapore 12934 T 1731 1731
249 Singapore 12935 A 1731 1731
250 Singapore 12936 A 1731 1731
251 Singapore 12937 A 1731 1731
252 Singapore 12938 G 1731 1731
253 Singapore 12939 T 1731 1731
254 Singapore 12940 G 1731 1731
255 Singapore 12941 A 1731 1731
256 Singapore 12942 A 1731 1731
257 Singapore 12943 G 1731 1731
258 Singapore 12944 T 1731 1731
259 Singapore 12945 A 1731 1731
260 Singapore 12946 T 1731 1731
261 Singapore 12947 T 1731 1731
262 Singapore 12948 T 1731 1731
263 Singapore 12949 A 1731 1731
264 Singapore 12950 T 1731 1731
265 Singapore 12951 A 1731 1731
266 Singapore 12952 C 1731 1731
267 Singapore 12953 T 1731 1731
268 Singapore 12954 T 1731 1731
269 Singapore 12955 T 1731 1731
270 Singapore 12956 A 1731 1731
271 Singapore 12957 T 1731 1731
272 Singapore 12958 T 1731 1731
273 Singapore 12959 A 1731 1731
274 Singapore 12960 A 1731 1731
275 Singapore 12961 A 1731 1731
276 Singapore 12962 G 1731 1731
277 Singapore 12963 G 1731 1731
278 Singapore 12964 A G 1731 1730 Gly4233Gly
279 Singapore 12965 T 1731 1731
280 Singapore 12966 T 1731 1731
281 Singapore 12967 A 1731 1731
282 Singapore 12968 A 1731 1731
283 Singapore 12969 A 1731 1731
284 Singapore 12970 C T 1731 1721 Asn4235Asn
285 Singapore 12971 A 1731 1731
286 Singapore 12972 A 1731 1731
287 Singapore 12973 C 1731 1731
288 Singapore 12974 C 1731 1731
289 Singapore 12975 T 1731 1731
290 Singapore 12976 A 1731 1731
291 Singapore 12977 A 1731 1731
292 Singapore 12978 A 1731 1731
293 Singapore 12979 T 1731 1731
294 Singapore 12980 A 1731 1731
295 Singapore 12981 G 1731 1731
296 Singapore 12982 A 1731 1731
297 Singapore 12983 G 1731 1731
298 Singapore 12984 G 1731 1731
299 Singapore 12985 T 1731 1731
300 Singapore 12986 A 1731 1731
301 Singapore 12987 T C 1731 1730 Met4241Thr
302 Singapore 12988 G T 1731 1730 Met4241Ile
303 Singapore 12989 G 1731 1731
304 Singapore 12990 T 1731 1731
305 Singapore 12991 A 1731 1731
306 Singapore 12992 C 1731 1731
307 Singapore 12993 T 1731 1731
308 Singapore 12994 T C 1731 1730 Leu4243Leu
309 Singapore 12995 G 1731 1731
310 Singapore 12996 G 1731 1731
311 Singapore 12997 T 1731 1731
312 Singapore 12998 A 1731 1731
313 Singapore 12999 G 1731 1731
314 Singapore 13000 T 1731 1731
315 Singapore 13001 T 1731 1731
316 Singapore 13002 T 1731 1731
317 Singapore 13003 A G 1731 1729 Leu4246Leu
318 Singapore 13004 G A 1731 1728 Ala4247Thr
319 Singapore 13005 C 1731 1731
320 Singapore 13006 T 1731 1731
321 Singapore 13007 G 1731 1731
322 Singapore 13008 C 1731 1731
323 Singapore 13009 C 1731 1731
324 Singapore 13010 A 1731 1731
325 Singapore 13011 C 1731 1731
326 Singapore 13012 A 1731 1731
327 Singapore 13013 G 1731 1731
328 Singapore 13014 T 1731 1731
329 Singapore 13015 A 1731 1731
330 Singapore 13016 C 1731 1731
331 Singapore 13017 G 1731 1731
332 Singapore 13018 T 1731 1731
333 Singapore 13019 C T 1731 1730 Leu4252Leu
334 Singapore 13020 T 1731 1731
335 Singapore 13021 A 1731 1731
336 Singapore 13022 C 1731 1731
337 Singapore 13023 A 1731 1731
338 Singapore 13024 A 1731 1731