National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27           1                          
I   6             1                        
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36             1                        
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Serbia 12686 A 147 147
1 Serbia 12687 A 147 147
2 Serbia 12688 T 147 147
3 Serbia 12689 A 147 147
4 Serbia 12690 A 147 147
5 Serbia 12691 T 147 147
6 Serbia 12692 G 147 147
7 Serbia 12693 A 147 147
8 Serbia 12694 G 147 147
9 Serbia 12695 C 147 147
10 Serbia 12696 T 147 147
11 Serbia 12697 T 147 147
12 Serbia 12698 A 147 147
13 Serbia 12699 G 147 147
14 Serbia 12700 T 147 147
15 Serbia 12701 C 147 147
16 Serbia 12702 C 147 147
17 Serbia 12703 T 147 147
18 Serbia 12704 G 147 147
19 Serbia 12705 T 147 147
20 Serbia 12706 T 147 147
21 Serbia 12707 G 147 147
22 Serbia 12708 C 147 147
23 Serbia 12709 A 147 147
24 Serbia 12710 C 147 147
25 Serbia 12711 T 147 147
26 Serbia 12712 A 147 147
27 Serbia 12713 C 147 147
28 Serbia 12714 G 147 147
29 Serbia 12715 A 147 147
30 Serbia 12716 C 147 147
31 Serbia 12717 A 147 147
32 Serbia 12718 G 147 147
33 Serbia 12719 A 147 147
34 Serbia 12720 T 147 147
35 Serbia 12721 G 147 147
36 Serbia 12722 T 147 147
37 Serbia 12723 C 147 147
38 Serbia 12724 T 147 147
39 Serbia 12725 T 147 147
40 Serbia 12726 G 147 147
41 Serbia 12727 T 147 147
42 Serbia 12728 G 147 147
43 Serbia 12729 C 147 147
44 Serbia 12730 T 147 147
45 Serbia 12731 G 147 147
46 Serbia 12732 C 147 147
47 Serbia 12733 C 147 147
48 Serbia 12734 G 147 147
49 Serbia 12735 G 147 147
50 Serbia 12736 T 147 147
51 Serbia 12737 A 147 147
52 Serbia 12738 C 147 147
53 Serbia 12739 T 147 147
54 Serbia 12740 A 147 147
55 Serbia 12741 C 147 147
56 Serbia 12742 A 147 147
57 Serbia 12743 C 147 147
58 Serbia 12744 A 147 147
59 Serbia 12745 A 147 147
60 Serbia 12746 A 147 147
61 Serbia 12747 C 147 147
62 Serbia 12748 T 147 147
63 Serbia 12749 G 147 147
64 Serbia 12750 C 147 147
65 Serbia 12751 T 147 147
66 Serbia 12752 T 147 147
67 Serbia 12753 G 147 147
68 Serbia 12754 C 147 147
69 Serbia 12755 A 147 147
70 Serbia 12756 C 147 147
71 Serbia 12757 T 147 147
72 Serbia 12758 G 147 147
73 Serbia 12759 A 147 147
74 Serbia 12760 T 147 147
75 Serbia 12761 G 147 147
76 Serbia 12762 A 147 147
77 Serbia 12763 C 147 147
78 Serbia 12764 A 147 147
79 Serbia 12765 A 147 147
80 Serbia 12766 T 147 147
81 Serbia 12767 G 147 147
82 Serbia 12768 C 147 147
83 Serbia 12769 G 147 147
84 Serbia 12770 T 147 147
85 Serbia 12771 T 147 147
86 Serbia 12772 A 147 147
87 Serbia 12773 G 147 147
88 Serbia 12774 C 147 147
89 Serbia 12775 T 147 147
90 Serbia 12776 T 147 147
91 Serbia 12777 A 147 147
92 Serbia 12778 C 147 147
93 Serbia 12779 T 147 147
94 Serbia 12780 A 147 147
95 Serbia 12781 C 147 147
96 Serbia 12782 A 147 147
97 Serbia 12783 A 147 147
98 Serbia 12784 C 147 147
99 Serbia 12785 A 147 147
100 Serbia 12786 C 147 147
101 Serbia 12787 A 147 147
102 Serbia 12788 A 147 147
103 Serbia 12789 C T 147 146 Thr4175Ile
104 Serbia 12790 A 147 147
105 Serbia 12791 A 147 147
106 Serbia 12792 A 147 147
107 Serbia 12793 G 147 147
108 Serbia 12794 G 147 147
109 Serbia 12795 G 147 147
110 Serbia 12796 A G 147 146 Gly4177Gly
111 Serbia 12797 G 147 147
112 Serbia 12798 G 147 147
113 Serbia 12799 T 147 147
114 Serbia 12800 A 147 147
115 Serbia 12801 G 147 147
116 Serbia 12802 G 147 147
117 Serbia 12803 T 147 147
118 Serbia 12804 T 147 147
119 Serbia 12805 T 147 147
120 Serbia 12806 G 147 147
121 Serbia 12807 T 147 147
122 Serbia 12808 A 147 147
123 Serbia 12809 C 147 147
124 Serbia 12810 T 147 147
125 Serbia 12811 T 147 147
126 Serbia 12812 G 147 147
127 Serbia 12813 C 147 147
128 Serbia 12814 A 147 147
129 Serbia 12815 C 147 147
130 Serbia 12816 T 147 147
131 Serbia 12817 G 147 147
132 Serbia 12818 T 147 147
133 Serbia 12819 T 147 147
134 Serbia 12820 A 147 147
135 Serbia 12821 T 147 147
136 Serbia 12822 C 147 147
137 Serbia 12823 C 147 147
138 Serbia 12824 G 147 147
139 Serbia 12825 A 147 147
140 Serbia 12826 T 147 147
141 Serbia 12827 T 147 147
142 Serbia 12828 T 147 147
143 Serbia 12829 A 147 147
144 Serbia 12830 C 147 147
145 Serbia 12831 A 147 147
146 Serbia 12832 G 147 147
147 Serbia 12833 G 147 147
148 Serbia 12834 A 147 147
149 Serbia 12835 T 147 147
150 Serbia 12836 T 147 147
151 Serbia 12837 T 147 147
152 Serbia 12838 G 147 147
153 Serbia 12839 A 147 147
154 Serbia 12840 A 147 147
155 Serbia 12841 A 147 147
156 Serbia 12842 T 147 147
157 Serbia 12843 G 147 147
158 Serbia 12844 G 147 147
159 Serbia 12845 G 147 147
160 Serbia 12846 C 147 147
161 Serbia 12847 T 147 147
162 Serbia 12848 A 147 147
163 Serbia 12849 G 147 147
164 Serbia 12850 A 147 147
165 Serbia 12851 T 147 147
166 Serbia 12852 T 147 147
167 Serbia 12853 C 147 147
168 Serbia 12854 C 147 147
169 Serbia 12855 C 147 147
170 Serbia 12856 T 147 147
171 Serbia 12857 A 147 147
172 Serbia 12858 A 147 147
173 Serbia 12859 G 147 147
174 Serbia 12860 A 147 147
175 Serbia 12861 G 147 147
176 Serbia 12862 T 147 147
177 Serbia 12863 G 147 147
178 Serbia 12864 A 147 147
179 Serbia 12865 T 147 147
180 Serbia 12866 G 147 147
181 Serbia 12867 G 147 147
182 Serbia 12868 A 147 147
183 Serbia 12869 A 147 147
184 Serbia 12870 C 147 147
185 Serbia 12871 T 147 147
186 Serbia 12872 G 147 147
187 Serbia 12873 G 147 147
188 Serbia 12874 T 147 147
189 Serbia 12875 A 147 147
190 Serbia 12876 C 147 147
191 Serbia 12877 T 147 147
192 Serbia 12878 A 147 147
193 Serbia 12879 T 147 147
194 Serbia 12880 C T 147 143 Ile4205Ile
195 Serbia 12881 T 147 147
196 Serbia 12882 A 147 147
197 Serbia 12883 T 147 147
198 Serbia 12884 A 147 147
199 Serbia 12885 C 147 147
200 Serbia 12886 A 147 147
201 Serbia 12887 G 147 147
202 Serbia 12888 A 147 147
203 Serbia 12889 A 147 147
204 Serbia 12890 C 147 147
205 Serbia 12891 T 147 147
206 Serbia 12892 G 147 147
207 Serbia 12893 G 147 147
208 Serbia 12894 A 147 147
209 Serbia 12895 A 147 147
210 Serbia 12896 C 147 147
211 Serbia 12897 C 147 147
212 Serbia 12898 A 147 147
213 Serbia 12899 C 147 147
214 Serbia 12900 C 147 147
215 Serbia 12901 T 147 147
216 Serbia 12902 T 147 147
217 Serbia 12903 G 147 147
218 Serbia 12904 T 147 147
219 Serbia 12905 A 147 147
220 Serbia 12906 G 147 147
221 Serbia 12907 G 147 147
222 Serbia 12908 T 147 147
223 Serbia 12909 T 147 147
224 Serbia 12910 T 147 147
225 Serbia 12911 G 147 147
226 Serbia 12912 T 147 147
227 Serbia 12913 T 147 147
228 Serbia 12914 A 147 147
229 Serbia 12915 C 147 147
230 Serbia 12916 A 147 147
231 Serbia 12917 G 147 147
232 Serbia 12918 A 147 147
233 Serbia 12919 C 147 147
234 Serbia 12920 A 147 147
235 Serbia 12921 C 147 147
236 Serbia 12922 A 147 147
237 Serbia 12923 C 147 147
238 Serbia 12924 C 147 147
239 Serbia 12925 T 147 147
240 Serbia 12926 A 147 147
241 Serbia 12927 A 147 147
242 Serbia 12928 A 147 147
243 Serbia 12929 G 147 147
244 Serbia 12930 G 147 147
245 Serbia 12931 T 147 147
246 Serbia 12932 C 147 147
247 Serbia 12933 C 147 147
248 Serbia 12934 T 147 147
249 Serbia 12935 A 147 147
250 Serbia 12936 A 147 147
251 Serbia 12937 A 147 147
252 Serbia 12938 G 147 147
253 Serbia 12939 T 147 147
254 Serbia 12940 G 147 147
255 Serbia 12941 A 147 147
256 Serbia 12942 A 147 147
257 Serbia 12943 G 147 147
258 Serbia 12944 T 147 147
259 Serbia 12945 A 147 147
260 Serbia 12946 T 147 147
261 Serbia 12947 T 147 147
262 Serbia 12948 T 147 147
263 Serbia 12949 A 147 147
264 Serbia 12950 T 147 147
265 Serbia 12951 A 147 147
266 Serbia 12952 C 147 147
267 Serbia 12953 T 147 147
268 Serbia 12954 T 147 147
269 Serbia 12955 T 147 147
270 Serbia 12956 A 147 147
271 Serbia 12957 T 147 147
272 Serbia 12958 T 147 147
273 Serbia 12959 A 147 147
274 Serbia 12960 A 147 147
275 Serbia 12961 A 147 147
276 Serbia 12962 G 147 147
277 Serbia 12963 G 147 147
278 Serbia 12964 A 147 147
279 Serbia 12965 T 147 147
280 Serbia 12966 T 147 147
281 Serbia 12967 A 147 147
282 Serbia 12968 A 147 147
283 Serbia 12969 A 147 147
284 Serbia 12970 C 147 147
285 Serbia 12971 A 147 147
286 Serbia 12972 A 147 147
287 Serbia 12973 C 147 147
288 Serbia 12974 C 147 147
289 Serbia 12975 T 147 147
290 Serbia 12976 A 147 147
291 Serbia 12977 A 147 147
292 Serbia 12978 A 147 147
293 Serbia 12979 T 147 147
294 Serbia 12980 A 147 147
295 Serbia 12981 G 147 147
296 Serbia 12982 A 147 147
297 Serbia 12983 G 147 147
298 Serbia 12984 G 147 147
299 Serbia 12985 T 147 147
300 Serbia 12986 A 147 147
301 Serbia 12987 T 147 147
302 Serbia 12988 G 147 147
303 Serbia 12989 G 147 147
304 Serbia 12990 T 147 147
305 Serbia 12991 A 147 147
306 Serbia 12992 C 147 147
307 Serbia 12993 T 147 147
308 Serbia 12994 T 147 147
309 Serbia 12995 G 147 147
310 Serbia 12996 G 147 147
311 Serbia 12997 T 147 147
312 Serbia 12998 A 147 147
313 Serbia 12999 G 147 147
314 Serbia 13000 T 147 147
315 Serbia 13001 T 147 147
316 Serbia 13002 T 147 147
317 Serbia 13003 A 147 147
318 Serbia 13004 G 147 147
319 Serbia 13005 C 147 147
320 Serbia 13006 T 147 147
321 Serbia 13007 G 147 147
322 Serbia 13008 C 147 147
323 Serbia 13009 C 147 147
324 Serbia 13010 A 147 147
325 Serbia 13011 C 147 147
326 Serbia 13012 A 147 147
327 Serbia 13013 G 147 147
328 Serbia 13014 T 147 147
329 Serbia 13015 A 147 147
330 Serbia 13016 C 147 147
331 Serbia 13017 G 147 147
332 Serbia 13018 T 147 147
333 Serbia 13019 C 147 147
334 Serbia 13020 T 147 147
335 Serbia 13021 A 147 147
336 Serbia 13022 C 147 147
337 Serbia 13023 A 147 147
338 Serbia 13024 A 147 147