National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Rwanda 12686 A 16 16
1 Rwanda 12687 A 16 16
2 Rwanda 12688 T 16 16
3 Rwanda 12689 A 16 16
4 Rwanda 12690 A 16 16
5 Rwanda 12691 T 16 16
6 Rwanda 12692 G 16 16
7 Rwanda 12693 A 16 16
8 Rwanda 12694 G 16 16
9 Rwanda 12695 C 16 16
10 Rwanda 12696 T 16 16
11 Rwanda 12697 T 16 16
12 Rwanda 12698 A 16 16
13 Rwanda 12699 G 16 16
14 Rwanda 12700 T 16 16
15 Rwanda 12701 C 16 16
16 Rwanda 12702 C 16 16
17 Rwanda 12703 T 16 16
18 Rwanda 12704 G 16 16
19 Rwanda 12705 T 16 16
20 Rwanda 12706 T 16 16
21 Rwanda 12707 G 16 16
22 Rwanda 12708 C 16 16
23 Rwanda 12709 A 16 16
24 Rwanda 12710 C 16 16
25 Rwanda 12711 T 16 16
26 Rwanda 12712 A 16 16
27 Rwanda 12713 C 16 16
28 Rwanda 12714 G 16 16
29 Rwanda 12715 A 16 16
30 Rwanda 12716 C 16 16
31 Rwanda 12717 A 16 16
32 Rwanda 12718 G 16 16
33 Rwanda 12719 A 16 16
34 Rwanda 12720 T 16 16
35 Rwanda 12721 G 16 16
36 Rwanda 12722 T 16 16
37 Rwanda 12723 C 16 16
38 Rwanda 12724 T 16 16
39 Rwanda 12725 T 16 16
40 Rwanda 12726 G 16 16
41 Rwanda 12727 T 16 16
42 Rwanda 12728 G 16 16
43 Rwanda 12729 C 16 16
44 Rwanda 12730 T 16 16
45 Rwanda 12731 G 16 16
46 Rwanda 12732 C 16 16
47 Rwanda 12733 C 33 33
48 Rwanda 12734 G 33 33
49 Rwanda 12735 G 33 33
50 Rwanda 12736 T 33 33
51 Rwanda 12737 A 33 33
52 Rwanda 12738 C 33 33
53 Rwanda 12739 T 33 33
54 Rwanda 12740 A 33 33
55 Rwanda 12741 C 33 33
56 Rwanda 12742 A 33 33
57 Rwanda 12743 C 33 33
58 Rwanda 12744 A 33 33
59 Rwanda 12745 A 33 33
60 Rwanda 12746 A 33 33
61 Rwanda 12747 C 33 33
62 Rwanda 12748 T 33 33
63 Rwanda 12749 G 33 33
64 Rwanda 12750 C 33 33
65 Rwanda 12751 T 33 33
66 Rwanda 12752 T 33 33
67 Rwanda 12753 G 33 33
68 Rwanda 12754 C 33 33
69 Rwanda 12755 A 33 33
70 Rwanda 12756 C 33 33
71 Rwanda 12757 T 33 33
72 Rwanda 12758 G 33 33
73 Rwanda 12759 A 33 33
74 Rwanda 12760 T 33 33
75 Rwanda 12761 G 33 33
76 Rwanda 12762 A 33 33
77 Rwanda 12763 C 33 33
78 Rwanda 12764 A 33 33
79 Rwanda 12765 A 33 33
80 Rwanda 12766 T 33 33
81 Rwanda 12767 G 33 33
82 Rwanda 12768 C 33 33
83 Rwanda 12769 G 33 33
84 Rwanda 12770 T 33 33
85 Rwanda 12771 T 33 33
86 Rwanda 12772 A 33 33
87 Rwanda 12773 G 33 33
88 Rwanda 12774 C 33 33
89 Rwanda 12775 T 33 33
90 Rwanda 12776 T 33 33
91 Rwanda 12777 A 33 33
92 Rwanda 12778 C 33 33
93 Rwanda 12779 T 33 33
94 Rwanda 12780 A 33 33
95 Rwanda 12781 C 33 33
96 Rwanda 12782 A 33 33
97 Rwanda 12783 A 33 33
98 Rwanda 12784 C 33 33
99 Rwanda 12785 A 33 33
100 Rwanda 12786 C 33 33
101 Rwanda 12787 A 33 33
102 Rwanda 12788 A 33 33
103 Rwanda 12789 C 33 33
104 Rwanda 12790 A 33 33
105 Rwanda 12791 A 33 33
106 Rwanda 12792 A 33 33
107 Rwanda 12793 G 33 33
108 Rwanda 12794 G 33 33
109 Rwanda 12795 G 33 33
110 Rwanda 12796 A 33 33
111 Rwanda 12797 G 33 33
112 Rwanda 12798 G 33 33
113 Rwanda 12799 T 33 33
114 Rwanda 12800 A 33 33
115 Rwanda 12801 G 33 33
116 Rwanda 12802 G 33 33
117 Rwanda 12803 T 33 33
118 Rwanda 12804 T 33 33
119 Rwanda 12805 T 33 33
120 Rwanda 12806 G 33 33
121 Rwanda 12807 T 33 33
122 Rwanda 12808 A 33 33
123 Rwanda 12809 C 33 33
124 Rwanda 12810 T 33 33
125 Rwanda 12811 T 33 33
126 Rwanda 12812 G 33 33
127 Rwanda 12813 C 33 33
128 Rwanda 12814 A 33 33
129 Rwanda 12815 C 33 33
130 Rwanda 12816 T 33 33
131 Rwanda 12817 G 33 33
132 Rwanda 12818 T 33 33
133 Rwanda 12819 T 33 33
134 Rwanda 12820 A 33 33
135 Rwanda 12821 T 33 33
136 Rwanda 12822 C 33 33
137 Rwanda 12823 C 33 33
138 Rwanda 12824 G 33 33
139 Rwanda 12825 A 33 33
140 Rwanda 12826 T 33 33
141 Rwanda 12827 T 33 33
142 Rwanda 12828 T 33 33
143 Rwanda 12829 A 33 33
144 Rwanda 12830 C 33 33
145 Rwanda 12831 A 33 33
146 Rwanda 12832 G 33 33
147 Rwanda 12833 G 33 33
148 Rwanda 12834 A 33 33
149 Rwanda 12835 T 33 33
150 Rwanda 12836 T 33 33
151 Rwanda 12837 T 33 33
152 Rwanda 12838 G 33 33
153 Rwanda 12839 A 33 33
154 Rwanda 12840 A 33 33
155 Rwanda 12841 A 33 33
156 Rwanda 12842 T 33 33
157 Rwanda 12843 G 33 33
158 Rwanda 12844 G 33 33
159 Rwanda 12845 G 33 33
160 Rwanda 12846 C 33 33
161 Rwanda 12847 T 33 33
162 Rwanda 12848 A 33 33
163 Rwanda 12849 G 33 33
164 Rwanda 12850 A 33 33
165 Rwanda 12851 T 33 33
166 Rwanda 12852 T 33 33
167 Rwanda 12853 C 33 33
168 Rwanda 12854 C 33 33
169 Rwanda 12855 C 33 33
170 Rwanda 12856 T 33 33
171 Rwanda 12857 A 33 33
172 Rwanda 12858 A 33 33
173 Rwanda 12859 G 33 33
174 Rwanda 12860 A 33 33
175 Rwanda 12861 G 33 33
176 Rwanda 12862 T 33 33
177 Rwanda 12863 G 33 33
178 Rwanda 12864 A 33 33
179 Rwanda 12865 T 33 33
180 Rwanda 12866 G 33 33
181 Rwanda 12867 G 33 33
182 Rwanda 12868 A 33 33
183 Rwanda 12869 A 33 33
184 Rwanda 12870 C 33 33
185 Rwanda 12871 T 33 33
186 Rwanda 12872 G 33 33
187 Rwanda 12873 G 33 33
188 Rwanda 12874 T 33 33
189 Rwanda 12875 A 33 33
190 Rwanda 12876 C 33 33
191 Rwanda 12877 T 33 33
192 Rwanda 12878 A 33 33
193 Rwanda 12879 T 33 33
194 Rwanda 12880 C 33 33
195 Rwanda 12881 T 33 33
196 Rwanda 12882 A 33 33
197 Rwanda 12883 T 33 33
198 Rwanda 12884 A 33 33
199 Rwanda 12885 C 33 33
200 Rwanda 12886 A 33 33
201 Rwanda 12887 G 33 33
202 Rwanda 12888 A 33 33
203 Rwanda 12889 A 33 33
204 Rwanda 12890 C 33 33
205 Rwanda 12891 T 33 33
206 Rwanda 12892 G 33 33
207 Rwanda 12893 G 33 33
208 Rwanda 12894 A 33 33
209 Rwanda 12895 A 33 33
210 Rwanda 12896 C 33 33
211 Rwanda 12897 C 33 33
212 Rwanda 12898 A 33 33
213 Rwanda 12899 C 33 33
214 Rwanda 12900 C 33 33
215 Rwanda 12901 T 33 33
216 Rwanda 12902 T 33 33
217 Rwanda 12903 G 33 33
218 Rwanda 12904 T 33 33
219 Rwanda 12905 A 33 33
220 Rwanda 12906 G 33 33
221 Rwanda 12907 G 33 33
222 Rwanda 12908 T 33 33
223 Rwanda 12909 T 33 33
224 Rwanda 12910 T 33 33
225 Rwanda 12911 G 33 33
226 Rwanda 12912 T 33 33
227 Rwanda 12913 T 33 33
228 Rwanda 12914 A 33 33
229 Rwanda 12915 C 33 33
230 Rwanda 12916 A 33 33
231 Rwanda 12917 G 33 33
232 Rwanda 12918 A 33 33
233 Rwanda 12919 C 33 33
234 Rwanda 12920 A 33 33
235 Rwanda 12921 C 33 33
236 Rwanda 12922 A 33 33
237 Rwanda 12923 C 33 33
238 Rwanda 12924 C 33 33
239 Rwanda 12925 T 33 33
240 Rwanda 12926 A 33 33
241 Rwanda 12927 A 33 33
242 Rwanda 12928 A 33 33
243 Rwanda 12929 G 33 33
244 Rwanda 12930 G 33 33
245 Rwanda 12931 T 33 33
246 Rwanda 12932 C 33 33
247 Rwanda 12933 C 33 33
248 Rwanda 12934 T 33 33
249 Rwanda 12935 A 33 33
250 Rwanda 12936 A 33 33
251 Rwanda 12937 A 33 33
252 Rwanda 12938 G 33 33
253 Rwanda 12939 T 33 33
254 Rwanda 12940 G 33 33
255 Rwanda 12941 A 33 33
256 Rwanda 12942 A 33 33
257 Rwanda 12943 G 33 33
258 Rwanda 12944 T 33 33
259 Rwanda 12945 A 33 33
260 Rwanda 12946 T 33 33
261 Rwanda 12947 T 33 33
262 Rwanda 12948 T 33 33
263 Rwanda 12949 A 33 33
264 Rwanda 12950 T 33 33
265 Rwanda 12951 A 33 33
266 Rwanda 12952 C 33 33
267 Rwanda 12953 T 33 33
268 Rwanda 12954 T 33 33
269 Rwanda 12955 T 33 33
270 Rwanda 12956 A 33 33
271 Rwanda 12957 T 33 33
272 Rwanda 12958 T 33 33
273 Rwanda 12959 A 33 33
274 Rwanda 12960 A 33 33
275 Rwanda 12961 A 33 33
276 Rwanda 12962 G 33 33
277 Rwanda 12963 G 33 33
278 Rwanda 12964 A 33 33
279 Rwanda 12965 T 33 33
280 Rwanda 12966 T 33 33
281 Rwanda 12967 A 33 33
282 Rwanda 12968 A 33 33
283 Rwanda 12969 A 33 33
284 Rwanda 12970 C 33 33
285 Rwanda 12971 A 33 33
286 Rwanda 12972 A 33 33
287 Rwanda 12973 C 33 33
288 Rwanda 12974 C 33 33
289 Rwanda 12975 T 33 33
290 Rwanda 12976 A 33 33
291 Rwanda 12977 A 33 33
292 Rwanda 12978 A 33 33
293 Rwanda 12979 T 33 33
294 Rwanda 12980 A 33 33
295 Rwanda 12981 G 33 33
296 Rwanda 12982 A 33 33
297 Rwanda 12983 G 33 33
298 Rwanda 12984 G 33 33
299 Rwanda 12985 T 33 33
300 Rwanda 12986 A 33 33
301 Rwanda 12987 T 33 33
302 Rwanda 12988 G 33 33
303 Rwanda 12989 G 33 33
304 Rwanda 12990 T 33 33
305 Rwanda 12991 A 33 33
306 Rwanda 12992 C 33 33
307 Rwanda 12993 T 33 33
308 Rwanda 12994 T 33 33
309 Rwanda 12995 G 33 33
310 Rwanda 12996 G 33 33
311 Rwanda 12997 T 33 33
312 Rwanda 12998 A 33 33
313 Rwanda 12999 G 33 33
314 Rwanda 13000 T 33 33
315 Rwanda 13001 T 33 33
316 Rwanda 13002 T 33 33
317 Rwanda 13003 A 33 33
318 Rwanda 13004 G 33 33
319 Rwanda 13005 C 33 33
320 Rwanda 13006 T 33 33
321 Rwanda 13007 G 33 33
322 Rwanda 13008 C 33 33
323 Rwanda 13009 C 33 33
324 Rwanda 13010 A 33 33
325 Rwanda 13011 C 33 33
326 Rwanda 13012 A 33 33
327 Rwanda 13013 G 33 33
328 Rwanda 13014 T 33 33
329 Rwanda 13015 A 33 33
330 Rwanda 13016 C 33 33
331 Rwanda 13017 G 33 33
332 Rwanda 13018 T 33 33
333 Rwanda 13019 C 33 33
334 Rwanda 13020 T 33 33
335 Rwanda 13021 A 33 33
336 Rwanda 13022 C 33 33
337 Rwanda 13023 A 33 33
338 Rwanda 13024 A 33 33