National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30 3                                 2    
C   9   1                                    
D   18     2     1                            
E   9                                        
F   12         1                              
G   27           1                            
H                                            
I   6               1                        
K   21                                        
L   45         1         3                    
M   6               1   1                    
N   21                       1                
P   18                   2     1     1        
Q   12             1               1          
R   18                 1           1          
S   15                                        
T   36 1             3 1               2      
V   18                                   1    
W   3                                        
Y   15                                       3

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Russia 12686 A 1809 1809
1 Russia 12687 A 1809 1809
2 Russia 12688 T 1809 1809
3 Russia 12689 A 1809 1809
4 Russia 12690 A 1809 1809
5 Russia 12691 T 1809 1809
6 Russia 12692 G 1809 1809
7 Russia 12693 A 1809 1809
8 Russia 12694 G 1809 1809
9 Russia 12695 C 1809 1809
10 Russia 12696 T 1809 1809
11 Russia 12697 T 1809 1809
12 Russia 12698 A 1809 1809
13 Russia 12699 G 1809 1809
14 Russia 12700 T 1809 1809
15 Russia 12701 C 1809 1809
16 Russia 12702 C 1809 1809
17 Russia 12703 T 1809 1809
18 Russia 12704 G 1809 1809
19 Russia 12705 T 1809 1809
20 Russia 12706 T 1809 1809
21 Russia 12707 G 1809 1809
22 Russia 12708 C T 1809 1808 Ala4148Val
23 Russia 12709 A 1809 1809
24 Russia 12710 C 1809 1809
25 Russia 12711 T 1809 1809
26 Russia 12712 A 1809 1809
27 Russia 12713 C 1809 1809
28 Russia 12714 G 1809 1809
29 Russia 12715 A 1809 1809
30 Russia 12716 C 1809 1809
31 Russia 12717 A 1809 1809
32 Russia 12718 G 1809 1809
33 Russia 12719 A 1809 1809
34 Russia 12720 T 1809 1809
35 Russia 12721 G 1809 1809
36 Russia 12722 T 1809 1809
37 Russia 12723 C 1809 1809
38 Russia 12724 T 1809 1809
39 Russia 12725 T 1809 1809
40 Russia 12726 G 1809 1809
41 Russia 12727 T 1809 1809
42 Russia 12728 G 1809 1809
43 Russia 12729 C 1809 1809
44 Russia 12730 T 1809 1809
45 Russia 12731 G 1809 1809
46 Russia 12732 C 1809 1809
47 Russia 12733 C T,A 1809 1804 Ala4156Ala-p.Ala4156Ala
48 Russia 12734 G 1809 1809
49 Russia 12735 G 1809 1809
50 Russia 12736 T 1809 1809
51 Russia 12737 A 1809 1809
52 Russia 12738 C 1809 1809
53 Russia 12739 T 1809 1809
54 Russia 12740 A 1809 1809
55 Russia 12741 C T,A 1809 1807 Thr4159Ile-p.Thr4159Lys
56 Russia 12742 A 1809 1809
57 Russia 12743 C 1809 1809
58 Russia 12744 A 1809 1809
59 Russia 12745 A 1809 1809
60 Russia 12746 A 1809 1809
61 Russia 12747 C 1809 1809
62 Russia 12748 T 1809 1809
63 Russia 12749 G 1809 1809
64 Russia 12750 C 1809 1809
65 Russia 12751 T 1809 1809
66 Russia 12752 T 1809 1809
67 Russia 12753 G 1809 1809
68 Russia 12754 C T 1809 1807 Cys4163Cys
69 Russia 12755 A 1809 1809
70 Russia 12756 C 1809 1809
71 Russia 12757 T 1809 1809
72 Russia 12758 G 1809 1809
73 Russia 12759 A 1809 1809
74 Russia 12760 T 1809 1809
75 Russia 12761 G 1809 1809
76 Russia 12762 A G 1809 1808 Asp4166Gly
77 Russia 12763 C 1809 1809
78 Russia 12764 A 1809 1809
79 Russia 12765 A 1809 1809
80 Russia 12766 T 1809 1809
81 Russia 12767 G 1809 1809
82 Russia 12768 C 1809 1809
83 Russia 12769 G T 1809 1808 Ala4168Ala
84 Russia 12770 T 1809 1809
85 Russia 12771 T 1809 1809
86 Russia 12772 A 1809 1809
87 Russia 12773 G 1809 1809
88 Russia 12774 C 1809 1809
89 Russia 12775 T 1809 1809
90 Russia 12776 T 1809 1809
91 Russia 12777 A 1809 1809
92 Russia 12778 C 1809 1809
93 Russia 12779 T 1809 1809
94 Russia 12780 A 1809 1808
95 Russia 12781 C T 1809 1802 Tyr4172Tyr
96 Russia 12782 A 1809 1808
97 Russia 12783 A 1809 1808
98 Russia 12784 C T 1809 1807 Asn4173Asn
99 Russia 12785 A 1809 1808
100 Russia 12786 C 1809 1808
101 Russia 12787 A 1809 1808
102 Russia 12788 A 1809 1809
103 Russia 12789 C 1809 1809
104 Russia 12790 A 1809 1809
105 Russia 12791 A 1809 1809
106 Russia 12792 A 1809 1809
107 Russia 12793 G 1809 1809
108 Russia 12794 G 1809 1809
109 Russia 12795 G 1809 1809
110 Russia 12796 A 1809 1809
111 Russia 12797 G 1809 1809
112 Russia 12798 G 1809 1809
113 Russia 12799 T 1809 1809
114 Russia 12800 A 1809 1809
115 Russia 12801 G A 1809 1806 Arg4179Lys
116 Russia 12802 G 1809 1809
117 Russia 12803 T 1809 1809
118 Russia 12804 T 1809 1809
119 Russia 12805 T 1808 1808
120 Russia 12806 G 1808 1808
121 Russia 12807 T 1808 1808
122 Russia 12808 A 1808 1808
123 Russia 12809 C T 1808 1805 Leu4182Phe
124 Russia 12810 T 1808 1808
125 Russia 12811 T 1808 1808
126 Russia 12812 G 1808 1808
127 Russia 12813 C 1808 1808
128 Russia 12814 A 1808 1808
129 Russia 12815 C 1808 1808
130 Russia 12816 T 1808 1808
131 Russia 12817 G A 1808 1804 Leu4184Leu
132 Russia 12818 T 1808 1808
133 Russia 12819 T 1808 1808
134 Russia 12820 A 1808 1808
135 Russia 12821 T 1808 1808
136 Russia 12822 C 1808 1808
137 Russia 12823 C 1808 1808
138 Russia 12824 G 1808 1808
139 Russia 12825 A 1808 1808
140 Russia 12826 T 1808 1808
141 Russia 12827 T 1808 1808
142 Russia 12828 T 1808 1808
143 Russia 12829 A 1808 1808
144 Russia 12830 C 1808 1808
145 Russia 12831 A G 1808 1804 Gln4189Arg
146 Russia 12832 G T 1808 1807 Gln4189His
147 Russia 12833 G 1808 1808
148 Russia 12834 A 1808 1808
149 Russia 12835 T C 1808 1807 Asp4190Asp
150 Russia 12836 T 1808 1808
151 Russia 12837 T 1808 1808
152 Russia 12838 G 1808 1808
153 Russia 12839 A 1808 1808
154 Russia 12840 A 1808 1808
155 Russia 12841 A 1808 1808
156 Russia 12842 T 1808 1808
157 Russia 12843 G 1808 1808
158 Russia 12844 G 1808 1808
159 Russia 12845 G 1808 1808
160 Russia 12846 C T 1808 1806 Ala4194Val
161 Russia 12847 T 1808 1808
162 Russia 12848 A 1808 1808
163 Russia 12849 G 1808 1808
164 Russia 12850 A 1808 1808
165 Russia 12851 T 1808 1808
166 Russia 12852 T 1808 1808
167 Russia 12853 C T 1808 1807 Phe4196Phe
168 Russia 12854 C 1808 1808
169 Russia 12855 C T 1808 1807 Pro4197Leu
170 Russia 12856 T 1808 1808
171 Russia 12857 A 1808 1808
172 Russia 12858 A 1808 1808
173 Russia 12859 G 1808 1808
174 Russia 12860 A 1808 1808
175 Russia 12861 G 1808 1808
176 Russia 12862 T 1808 1808
177 Russia 12863 G 1808 1808
178 Russia 12864 A 1808 1808
179 Russia 12865 T C 1809 1808 Asp4200Asp
180 Russia 12866 G 1809 1809
181 Russia 12867 G 1809 1809
182 Russia 12868 A G 1809 1808 Gly4201Gly
183 Russia 12869 A 1809 1809
184 Russia 12870 C 1809 1809
185 Russia 12871 T 1809 1809
186 Russia 12872 G 1809 1809
187 Russia 12873 G 1809 1809
188 Russia 12874 T 1809 1809
189 Russia 12875 A 1809 1809
190 Russia 12876 C 1809 1809
191 Russia 12877 T C 1809 1808 Thr4204Thr
192 Russia 12878 A 1809 1809
193 Russia 12879 T 1809 1809
194 Russia 12880 C T 1809 1807 Ile4205Ile
195 Russia 12881 T 1809 1809
196 Russia 12882 A 1809 1809
197 Russia 12883 T C 1809 1808 Tyr4206Tyr
198 Russia 12884 A 1809 1809
199 Russia 12885 C T 1809 1808 Thr4207Ile
200 Russia 12886 A G 1809 1761 Thr4207Thr
201 Russia 12887 G 1809 1809
202 Russia 12888 A 1809 1809
203 Russia 12889 A 1809 1809
204 Russia 12890 C 1809 1809
205 Russia 12891 T 1809 1809
206 Russia 12892 G T 1809 1803 Leu4209Leu
207 Russia 12893 G 1809 1809
208 Russia 12894 A 1809 1809
209 Russia 12895 A 1809 1809
210 Russia 12896 C T 1809 1808 Pro4211Ser
211 Russia 12897 C T 1809 1808 Pro4211Leu
212 Russia 12898 A G 1809 1805 Pro4211Pro
213 Russia 12899 C 1809 1809
214 Russia 12900 C 1809 1809
215 Russia 12901 T 1809 1809
216 Russia 12902 T 1809 1809
217 Russia 12903 G 1809 1809
218 Russia 12904 T 1809 1809
219 Russia 12905 A 1809 1809
220 Russia 12906 G 1809 1809
221 Russia 12907 G 1809 1809
222 Russia 12908 T 1809 1809
223 Russia 12909 T 1809 1809
224 Russia 12910 T 1809 1809
225 Russia 12911 G 1809 1809
226 Russia 12912 T 1809 1809
227 Russia 12913 T 1809 1809
228 Russia 12914 A 1809 1809
229 Russia 12915 C 1809 1809
230 Russia 12916 A 1809 1809
231 Russia 12917 G 1809 1809
232 Russia 12918 A 1809 1809
233 Russia 12919 C 1809 1809
234 Russia 12920 A G 1809 1803 Thr4219Ala
235 Russia 12921 C 1809 1809
236 Russia 12922 A 1809 1809
237 Russia 12923 C 1809 1809
238 Russia 12924 C 1809 1809
239 Russia 12925 T 1809 1809
240 Russia 12926 A 1809 1809
241 Russia 12927 A 1809 1809
242 Russia 12928 A 1809 1809
243 Russia 12929 G 1809 1808
244 Russia 12930 G 1809 1808
245 Russia 12931 T 1809 1808
246 Russia 12932 C 1809 1808
247 Russia 12933 C 1809 1808
248 Russia 12934 T 1809 1808
249 Russia 12935 A 1809 1808
250 Russia 12936 A 1809 1808
251 Russia 12937 A 1809 1808
252 Russia 12938 G 1809 1808
253 Russia 12939 T 1809 1808
254 Russia 12940 G T 1809 1807 Val4225Val
255 Russia 12941 A 1809 1808
256 Russia 12942 A 1809 1808
257 Russia 12943 G 1809 1808
258 Russia 12944 T 1809 1808
259 Russia 12945 A 1809 1808
260 Russia 12946 T 1809 1808
261 Russia 12947 T 1809 1808
262 Russia 12948 T 1809 1808
263 Russia 12949 A 1809 1808
264 Russia 12950 T 1809 1808
265 Russia 12951 A 1809 1808
266 Russia 12952 C T 1809 1796 Tyr4229Tyr
267 Russia 12953 T 1809 1809
268 Russia 12954 T 1809 1809
269 Russia 12955 T 1809 1809
270 Russia 12956 A 1809 1809
271 Russia 12957 T 1809 1809
272 Russia 12958 T 1809 1809
273 Russia 12959 A 1809 1809
274 Russia 12960 A 1809 1809
275 Russia 12961 A 1809 1809
276 Russia 12962 G 1809 1809
277 Russia 12963 G 1809 1809
278 Russia 12964 A 1809 1809
279 Russia 12965 T 1809 1809
280 Russia 12966 T 1809 1809
281 Russia 12967 A 1809 1809
282 Russia 12968 A 1809 1809
283 Russia 12969 A 1809 1809
284 Russia 12970 C 1809 1809
285 Russia 12971 A 1809 1809
286 Russia 12972 A 1809 1809
287 Russia 12973 C 1809 1809
288 Russia 12974 C 1809 1809
289 Russia 12975 T 1809 1809
290 Russia 12976 A 1809 1809
291 Russia 12977 A 1809 1809
292 Russia 12978 A 1809 1809
293 Russia 12979 T 1809 1809
294 Russia 12980 A 1809 1809
295 Russia 12981 G 1809 1809
296 Russia 12982 A G 1809 1808 Arg4239Arg
297 Russia 12983 G 1809 1809
298 Russia 12984 G 1809 1809
299 Russia 12985 T 1809 1809
300 Russia 12986 A T 1809 1808 Met4241Leu
301 Russia 12987 T 1809 1809
302 Russia 12988 G A 1809 1808 Met4241Ile
303 Russia 12989 G 1809 1809
304 Russia 12990 T 1809 1809
305 Russia 12991 A 1809 1809
306 Russia 12992 C 1809 1809
307 Russia 12993 T 1809 1809
308 Russia 12994 T 1809 1809
309 Russia 12995 G 1809 1809
310 Russia 12996 G 1809 1809
311 Russia 12997 T 1809 1809
312 Russia 12998 A 1809 1809
313 Russia 12999 G 1809 1809
314 Russia 13000 T 1809 1809
315 Russia 13001 T 1809 1809
316 Russia 13002 T 1808 1808
317 Russia 13003 A 1808 1808
318 Russia 13004 G 1808 1808
319 Russia 13005 C 1808 1808
320 Russia 13006 T 1808 1808
321 Russia 13007 G 1808 1808
322 Russia 13008 C 1808 1808
323 Russia 13009 C 1808 1808
324 Russia 13010 A 1808 1808
325 Russia 13011 C T 1808 1802 Thr4249Ile
326 Russia 13012 A 1808 1808
327 Russia 13013 G 1808 1808
328 Russia 13014 T 1808 1808
329 Russia 13015 A 1808 1808
330 Russia 13016 C 1808 1808
331 Russia 13017 G 1808 1808
332 Russia 13018 T 1808 1808
333 Russia 13019 C T 1808 1807 Leu4252Leu
334 Russia 13020 T 1808 1808
335 Russia 13021 A 1808 1808
336 Russia 13022 C 1808 1808
337 Russia 13023 A 1808 1808
338 Russia 13024 A 1808 1808