National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                     1              
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6             1                        
N   21                                      
P   18                 1                    
Q   12                                      
R   18                                      
S   15                                      
T   36 1                                    
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Romania 12686 A 382 382
1 Romania 12687 A 382 382
2 Romania 12688 T 382 382
3 Romania 12689 A 382 382
4 Romania 12690 A 382 382
5 Romania 12691 T 382 382
6 Romania 12692 G 382 382
7 Romania 12693 A 382 382
8 Romania 12694 G 382 382
9 Romania 12695 C 382 382
10 Romania 12696 T 382 382
11 Romania 12697 T 382 382
12 Romania 12698 A 382 382
13 Romania 12699 G 382 382
14 Romania 12700 T 382 382
15 Romania 12701 C 382 382
16 Romania 12702 C 382 382
17 Romania 12703 T 382 382
18 Romania 12704 G 382 382
19 Romania 12705 T 382 382
20 Romania 12706 T 382 382
21 Romania 12707 G 382 382
22 Romania 12708 C 382 382
23 Romania 12709 A 382 382
24 Romania 12710 C 382 382
25 Romania 12711 T 382 382
26 Romania 12712 A 382 382
27 Romania 12713 C 382 382
28 Romania 12714 G 382 382
29 Romania 12715 A 382 382
30 Romania 12716 C 382 382
31 Romania 12717 A 382 382
32 Romania 12718 G 382 382
33 Romania 12719 A 382 382
34 Romania 12720 T 382 382
35 Romania 12721 G 382 382
36 Romania 12722 T 382 382
37 Romania 12723 C 382 382
38 Romania 12724 T 382 382
39 Romania 12725 T 382 382
40 Romania 12726 G 382 382
41 Romania 12727 T 382 382
42 Romania 12728 G 382 382
43 Romania 12729 C 382 382
44 Romania 12730 T 382 382
45 Romania 12731 G 382 382
46 Romania 12732 C 382 382
47 Romania 12733 C 382 382
48 Romania 12734 G 382 382
49 Romania 12735 G 382 382
50 Romania 12736 T 382 382
51 Romania 12737 A 382 382
52 Romania 12738 C 382 382
53 Romania 12739 T 382 382
54 Romania 12740 A 382 382
55 Romania 12741 C 382 382
56 Romania 12742 A 382 382
57 Romania 12743 C 382 382
58 Romania 12744 A 382 382
59 Romania 12745 A 382 382
60 Romania 12746 A 382 382
61 Romania 12747 C 382 382
62 Romania 12748 T 382 382
63 Romania 12749 G 382 382
64 Romania 12750 C 382 382
65 Romania 12751 T 382 382
66 Romania 12752 T 382 382
67 Romania 12753 G 382 382
68 Romania 12754 C 382 382
69 Romania 12755 A 382 382
70 Romania 12756 C 382 382
71 Romania 12757 T 382 382
72 Romania 12758 G 382 382
73 Romania 12759 A 382 382
74 Romania 12760 T 382 382
75 Romania 12761 G 382 382
76 Romania 12762 A 382 382
77 Romania 12763 C 382 382
78 Romania 12764 A 382 382
79 Romania 12765 A 382 382
80 Romania 12766 T 382 382
81 Romania 12767 G 382 382
82 Romania 12768 C 382 382
83 Romania 12769 G A 382 380 Ala4168Ala
84 Romania 12770 T 382 382
85 Romania 12771 T 382 382
86 Romania 12772 A 382 382
87 Romania 12773 G 382 382
88 Romania 12774 C 382 382
89 Romania 12775 T 382 382
90 Romania 12776 T 382 382
91 Romania 12777 A 382 382
92 Romania 12778 C 382 382
93 Romania 12779 T 382 382
94 Romania 12780 A 382 382
95 Romania 12781 C 382 382
96 Romania 12782 A 382 382
97 Romania 12783 A 382 382
98 Romania 12784 C 382 382
99 Romania 12785 A 382 382
100 Romania 12786 C 382 382
101 Romania 12787 A 382 382
102 Romania 12788 A 382 382
103 Romania 12789 C 382 382
104 Romania 12790 A 382 382
105 Romania 12791 A 382 382
106 Romania 12792 A 382 382
107 Romania 12793 G 382 382
108 Romania 12794 G 382 382
109 Romania 12795 G 382 382
110 Romania 12796 A 382 382
111 Romania 12797 G 382 382
112 Romania 12798 G 382 382
113 Romania 12799 T 382 382
114 Romania 12800 A 382 382
115 Romania 12801 G 382 382
116 Romania 12802 G 382 382
117 Romania 12803 T 382 382
118 Romania 12804 T 382 382
119 Romania 12805 T 382 382
120 Romania 12806 G 382 382
121 Romania 12807 T 382 382
122 Romania 12808 A 382 382
123 Romania 12809 C 382 382
124 Romania 12810 T 382 382
125 Romania 12811 T 382 382
126 Romania 12812 G 382 382
127 Romania 12813 C 382 382
128 Romania 12814 A 382 382
129 Romania 12815 C 382 382
130 Romania 12816 T 382 382
131 Romania 12817 G 382 382
132 Romania 12818 T 382 382
133 Romania 12819 T 382 382
134 Romania 12820 A 382 382
135 Romania 12821 T 382 382
136 Romania 12822 C 382 382
137 Romania 12823 C 382 382
138 Romania 12824 G 382 382
139 Romania 12825 A 382 382
140 Romania 12826 T 382 382
141 Romania 12827 T 382 382
142 Romania 12828 T 382 382
143 Romania 12829 A 382 382
144 Romania 12830 C 382 382
145 Romania 12831 A 382 382
146 Romania 12832 G 382 382
147 Romania 12833 G 382 382
148 Romania 12834 A 382 382
149 Romania 12835 T 382 382
150 Romania 12836 T 382 382
151 Romania 12837 T 382 382
152 Romania 12838 G 382 382
153 Romania 12839 A 382 382
154 Romania 12840 A 382 382
155 Romania 12841 A 382 382
156 Romania 12842 T 382 382
157 Romania 12843 G 382 382
158 Romania 12844 G 382 382
159 Romania 12845 G 382 382
160 Romania 12846 C 382 382
161 Romania 12847 T 382 382
162 Romania 12848 A 382 382
163 Romania 12849 G 382 382
164 Romania 12850 A 382 382
165 Romania 12851 T 382 382
166 Romania 12852 T 382 382
167 Romania 12853 C 382 382
168 Romania 12854 C 382 382
169 Romania 12855 C 382 382
170 Romania 12856 T 382 382
171 Romania 12857 A 382 382
172 Romania 12858 A 382 382
173 Romania 12859 G 382 382
174 Romania 12860 A 382 382
175 Romania 12861 G 382 382
176 Romania 12862 T 382 382
177 Romania 12863 G 382 382
178 Romania 12864 A 382 382
179 Romania 12865 T 382 382
180 Romania 12866 G 382 382
181 Romania 12867 G 382 382
182 Romania 12868 A 382 382
183 Romania 12869 A 382 382
184 Romania 12870 C 382 382
185 Romania 12871 T 382 382
186 Romania 12872 G 382 382
187 Romania 12873 G 382 382
188 Romania 12874 T 382 382
189 Romania 12875 A G 382 376 Thr4204Ala
190 Romania 12876 C 382 382
191 Romania 12877 T 382 382
192 Romania 12878 A 382 382
193 Romania 12879 T 382 382
194 Romania 12880 C 382 382
195 Romania 12881 T 382 382
196 Romania 12882 A 382 382
197 Romania 12883 T 382 382
198 Romania 12884 A 382 382
199 Romania 12885 C 382 382
200 Romania 12886 A 382 382
201 Romania 12887 G 382 382
202 Romania 12888 A 382 382
203 Romania 12889 A 382 382
204 Romania 12890 C 382 382
205 Romania 12891 T 382 382
206 Romania 12892 G 382 382
207 Romania 12893 G 382 382
208 Romania 12894 A 382 382
209 Romania 12895 A 382 382
210 Romania 12896 C 382 382
211 Romania 12897 C T 382 380 Pro4211Leu
212 Romania 12898 A 382 382
213 Romania 12899 C 382 382
214 Romania 12900 C 382 382
215 Romania 12901 T 382 382
216 Romania 12902 T 382 382
217 Romania 12903 G 382 382
218 Romania 12904 T 382 382
219 Romania 12905 A 382 382
220 Romania 12906 G 382 382
221 Romania 12907 G 382 382
222 Romania 12908 T 382 382
223 Romania 12909 T 382 382
224 Romania 12910 T 382 382
225 Romania 12911 G 382 382
226 Romania 12912 T 382 382
227 Romania 12913 T 382 382
228 Romania 12914 A 382 382
229 Romania 12915 C 382 382
230 Romania 12916 A 382 382
231 Romania 12917 G 382 382
232 Romania 12918 A 382 382
233 Romania 12919 C 382 382
234 Romania 12920 A 382 382
235 Romania 12921 C 382 382
236 Romania 12922 A 382 382
237 Romania 12923 C 382 382
238 Romania 12924 C 382 382
239 Romania 12925 T 382 382
240 Romania 12926 A 382 382
241 Romania 12927 A 382 382
242 Romania 12928 A 382 382
243 Romania 12929 G 382 382
244 Romania 12930 G 382 382
245 Romania 12931 T 382 382
246 Romania 12932 C 382 382
247 Romania 12933 C 382 382
248 Romania 12934 T 382 382
249 Romania 12935 A 382 382
250 Romania 12936 A 382 382
251 Romania 12937 A 382 382
252 Romania 12938 G 382 382
253 Romania 12939 T 382 382
254 Romania 12940 G 382 382
255 Romania 12941 A 382 382
256 Romania 12942 A 382 382
257 Romania 12943 G 382 382
258 Romania 12944 T 382 382
259 Romania 12945 A 382 382
260 Romania 12946 T 382 382
261 Romania 12947 T 382 382
262 Romania 12948 T 382 382
263 Romania 12949 A 382 382
264 Romania 12950 T 382 382
265 Romania 12951 A 382 382
266 Romania 12952 C 382 382
267 Romania 12953 T 382 382
268 Romania 12954 T 382 382
269 Romania 12955 T 382 382
270 Romania 12956 A 382 382
271 Romania 12957 T 382 382
272 Romania 12958 T 382 382
273 Romania 12959 A 382 382
274 Romania 12960 A 382 382
275 Romania 12961 A 382 382
276 Romania 12962 G 382 382
277 Romania 12963 G 382 382
278 Romania 12964 A 382 382
279 Romania 12965 T 382 382
280 Romania 12966 T 382 382
281 Romania 12967 A 382 382
282 Romania 12968 A 382 382
283 Romania 12969 A 382 382
284 Romania 12970 C 382 382
285 Romania 12971 A 382 382
286 Romania 12972 A 382 382
287 Romania 12973 C 382 382
288 Romania 12974 C 382 382
289 Romania 12975 T 382 382
290 Romania 12976 A 382 382
291 Romania 12977 A 382 382
292 Romania 12978 A 382 382
293 Romania 12979 T 382 382
294 Romania 12980 A 382 382
295 Romania 12981 G 382 382
296 Romania 12982 A 382 382
297 Romania 12983 G 382 382
298 Romania 12984 G 382 382
299 Romania 12985 T 382 382
300 Romania 12986 A 382 382
301 Romania 12987 T 382 382
302 Romania 12988 G T 382 380 Met4241Ile
303 Romania 12989 G 382 382
304 Romania 12990 T 382 382
305 Romania 12991 A 382 382
306 Romania 12992 C 382 382
307 Romania 12993 T 382 382
308 Romania 12994 T 382 382
309 Romania 12995 G 382 382
310 Romania 12996 G 382 382
311 Romania 12997 T 382 382
312 Romania 12998 A 382 382
313 Romania 12999 G 382 382
314 Romania 13000 T 382 382
315 Romania 13001 T 382 382
316 Romania 13002 T 382 382
317 Romania 13003 A 382 382
318 Romania 13004 G C 382 380 Ala4247Pro
319 Romania 13005 C 382 382
320 Romania 13006 T 382 382
321 Romania 13007 G 382 382
322 Romania 13008 C 382 382
323 Romania 13009 C 382 382
324 Romania 13010 A 382 382
325 Romania 13011 C 382 382
326 Romania 13012 A 382 382
327 Romania 13013 G 382 382
328 Romania 13014 T 382 382
329 Romania 13015 A 382 382
330 Romania 13016 C 382 382
331 Romania 13017 G 382 382
332 Romania 13018 T 382 382
333 Romania 13019 C 382 382
334 Romania 13020 T 382 382
335 Romania 13021 A 382 382
336 Romania 13022 C 382 382
337 Romania 13023 A 382 382
338 Romania 13024 A 382 382