National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Qatar 12686 A 16 16
1 Qatar 12687 A 16 16
2 Qatar 12688 T 16 16
3 Qatar 12689 A 16 16
4 Qatar 12690 A 16 16
5 Qatar 12691 T 16 16
6 Qatar 12692 G 16 16
7 Qatar 12693 A 16 16
8 Qatar 12694 G 16 16
9 Qatar 12695 C 16 16
10 Qatar 12696 T 16 16
11 Qatar 12697 T 16 16
12 Qatar 12698 A 16 16
13 Qatar 12699 G 16 16
14 Qatar 12700 T 16 16
15 Qatar 12701 C 16 16
16 Qatar 12702 C 16 16
17 Qatar 12703 T 16 16
18 Qatar 12704 G 16 16
19 Qatar 12705 T 16 16
20 Qatar 12706 T 16 16
21 Qatar 12707 G 16 16
22 Qatar 12708 C 16 16
23 Qatar 12709 A 16 16
24 Qatar 12710 C 16 16
25 Qatar 12711 T 16 16
26 Qatar 12712 A 16 16
27 Qatar 12713 C 16 16
28 Qatar 12714 G 16 16
29 Qatar 12715 A 16 16
30 Qatar 12716 C 16 16
31 Qatar 12717 A 16 16
32 Qatar 12718 G 16 16
33 Qatar 12719 A 16 16
34 Qatar 12720 T 16 16
35 Qatar 12721 G 16 16
36 Qatar 12722 T 16 16
37 Qatar 12723 C 16 16
38 Qatar 12724 T 16 16
39 Qatar 12725 T 16 16
40 Qatar 12726 G 16 16
41 Qatar 12727 T 16 16
42 Qatar 12728 G 16 16
43 Qatar 12729 C 16 16
44 Qatar 12730 T 16 16
45 Qatar 12731 G 16 16
46 Qatar 12732 C 16 16
47 Qatar 12733 C 16 16
48 Qatar 12734 G 16 16
49 Qatar 12735 G 16 16
50 Qatar 12736 T 16 16
51 Qatar 12737 A 16 16
52 Qatar 12738 C 16 16
53 Qatar 12739 T 16 16
54 Qatar 12740 A 16 16
55 Qatar 12741 C 16 16
56 Qatar 12742 A 16 16
57 Qatar 12743 C 16 16
58 Qatar 12744 A 16 16
59 Qatar 12745 A 16 16
60 Qatar 12746 A 16 16
61 Qatar 12747 C 16 16
62 Qatar 12748 T 16 16
63 Qatar 12749 G 16 16
64 Qatar 12750 C 16 16
65 Qatar 12751 T 16 16
66 Qatar 12752 T 16 16
67 Qatar 12753 G 16 16
68 Qatar 12754 C 16 16
69 Qatar 12755 A 16 16
70 Qatar 12756 C 16 16
71 Qatar 12757 T 16 16
72 Qatar 12758 G 16 16
73 Qatar 12759 A 16 16
74 Qatar 12760 T 16 16
75 Qatar 12761 G 16 16
76 Qatar 12762 A 16 16
77 Qatar 12763 C 16 16
78 Qatar 12764 A 16 16
79 Qatar 12765 A 16 16
80 Qatar 12766 T 16 16
81 Qatar 12767 G 16 16
82 Qatar 12768 C 16 16
83 Qatar 12769 G 16 16
84 Qatar 12770 T 16 16
85 Qatar 12771 T 16 16
86 Qatar 12772 A 16 16
87 Qatar 12773 G 16 16
88 Qatar 12774 C 16 16
89 Qatar 12775 T 16 16
90 Qatar 12776 T 16 16
91 Qatar 12777 A 16 16
92 Qatar 12778 C 16 16
93 Qatar 12779 T 16 16
94 Qatar 12780 A 16 16
95 Qatar 12781 C 16 16
96 Qatar 12782 A 16 16
97 Qatar 12783 A 16 16
98 Qatar 12784 C 16 16
99 Qatar 12785 A 16 16
100 Qatar 12786 C 16 16
101 Qatar 12787 A 16 16
102 Qatar 12788 A 16 16
103 Qatar 12789 C 16 16
104 Qatar 12790 A 16 16
105 Qatar 12791 A 16 16
106 Qatar 12792 A 16 16
107 Qatar 12793 G 16 16
108 Qatar 12794 G 16 16
109 Qatar 12795 G 16 16
110 Qatar 12796 A 16 16
111 Qatar 12797 G 16 16
112 Qatar 12798 G 16 16
113 Qatar 12799 T 16 16
114 Qatar 12800 A 16 16
115 Qatar 12801 G 16 16
116 Qatar 12802 G 16 16
117 Qatar 12803 T 16 16
118 Qatar 12804 T 16 16
119 Qatar 12805 T 16 16
120 Qatar 12806 G 16 16
121 Qatar 12807 T 16 16
122 Qatar 12808 A 16 16
123 Qatar 12809 C 16 16
124 Qatar 12810 T 16 16
125 Qatar 12811 T 16 16
126 Qatar 12812 G 16 16
127 Qatar 12813 C 16 16
128 Qatar 12814 A 16 16
129 Qatar 12815 C 16 16
130 Qatar 12816 T 16 16
131 Qatar 12817 G 16 16
132 Qatar 12818 T 16 16
133 Qatar 12819 T 16 16
134 Qatar 12820 A 16 16
135 Qatar 12821 T 16 16
136 Qatar 12822 C 16 16
137 Qatar 12823 C 16 16
138 Qatar 12824 G 16 16
139 Qatar 12825 A 16 16
140 Qatar 12826 T 16 16
141 Qatar 12827 T 16 16
142 Qatar 12828 T 16 16
143 Qatar 12829 A 16 16
144 Qatar 12830 C 16 16
145 Qatar 12831 A 16 16
146 Qatar 12832 G 16 16
147 Qatar 12833 G 16 16
148 Qatar 12834 A 16 16
149 Qatar 12835 T 16 16
150 Qatar 12836 T 16 16
151 Qatar 12837 T 16 16
152 Qatar 12838 G 16 16
153 Qatar 12839 A 16 16
154 Qatar 12840 A 16 16
155 Qatar 12841 A 16 16
156 Qatar 12842 T 16 16
157 Qatar 12843 G 16 16
158 Qatar 12844 G 16 16
159 Qatar 12845 G 16 16
160 Qatar 12846 C 16 16
161 Qatar 12847 T 16 16
162 Qatar 12848 A 16 16
163 Qatar 12849 G 16 16
164 Qatar 12850 A 16 16
165 Qatar 12851 T 16 16
166 Qatar 12852 T 16 16
167 Qatar 12853 C 16 16
168 Qatar 12854 C 16 16
169 Qatar 12855 C 16 16
170 Qatar 12856 T 16 16
171 Qatar 12857 A 16 16
172 Qatar 12858 A 16 16
173 Qatar 12859 G 16 16
174 Qatar 12860 A 16 16
175 Qatar 12861 G 16 16
176 Qatar 12862 T 16 16
177 Qatar 12863 G 16 16
178 Qatar 12864 A 16 16
179 Qatar 12865 T 16 16
180 Qatar 12866 G 16 16
181 Qatar 12867 G 16 16
182 Qatar 12868 A 16 16
183 Qatar 12869 A 16 16
184 Qatar 12870 C 16 16
185 Qatar 12871 T 16 16
186 Qatar 12872 G 16 16
187 Qatar 12873 G 16 16
188 Qatar 12874 T 16 16
189 Qatar 12875 A 16 16
190 Qatar 12876 C 16 16
191 Qatar 12877 T 16 16
192 Qatar 12878 A 16 16
193 Qatar 12879 T 16 16
194 Qatar 12880 C 16 16
195 Qatar 12881 T 16 16
196 Qatar 12882 A 16 16
197 Qatar 12883 T 16 16
198 Qatar 12884 A 16 16
199 Qatar 12885 C 16 16
200 Qatar 12886 A 16 16
201 Qatar 12887 G 16 16
202 Qatar 12888 A 16 16
203 Qatar 12889 A 16 16
204 Qatar 12890 C 16 16
205 Qatar 12891 T 16 16
206 Qatar 12892 G 16 16
207 Qatar 12893 G 16 16
208 Qatar 12894 A 16 16
209 Qatar 12895 A 16 16
210 Qatar 12896 C 16 16
211 Qatar 12897 C 16 16
212 Qatar 12898 A 16 16
213 Qatar 12899 C 16 16
214 Qatar 12900 C 16 16
215 Qatar 12901 T 16 16
216 Qatar 12902 T 16 16
217 Qatar 12903 G 16 16
218 Qatar 12904 T 16 16
219 Qatar 12905 A 16 16
220 Qatar 12906 G 16 16
221 Qatar 12907 G 16 16
222 Qatar 12908 T 16 16
223 Qatar 12909 T 16 16
224 Qatar 12910 T 16 16
225 Qatar 12911 G 16 16
226 Qatar 12912 T 16 16
227 Qatar 12913 T 16 16
228 Qatar 12914 A 16 16
229 Qatar 12915 C 16 16
230 Qatar 12916 A 16 16
231 Qatar 12917 G 16 16
232 Qatar 12918 A 16 16
233 Qatar 12919 C 16 16
234 Qatar 12920 A 16 16
235 Qatar 12921 C 16 16
236 Qatar 12922 A 16 16
237 Qatar 12923 C 16 16
238 Qatar 12924 C 16 16
239 Qatar 12925 T 16 16
240 Qatar 12926 A 16 16
241 Qatar 12927 A 16 16
242 Qatar 12928 A 16 16
243 Qatar 12929 G 16 16
244 Qatar 12930 G 16 16
245 Qatar 12931 T 16 16
246 Qatar 12932 C 16 16
247 Qatar 12933 C 16 16
248 Qatar 12934 T 16 16
249 Qatar 12935 A 16 16
250 Qatar 12936 A 16 16
251 Qatar 12937 A 16 16
252 Qatar 12938 G 16 16
253 Qatar 12939 T 16 16
254 Qatar 12940 G 16 16
255 Qatar 12941 A 16 16
256 Qatar 12942 A 16 16
257 Qatar 12943 G 16 16
258 Qatar 12944 T 16 16
259 Qatar 12945 A 16 16
260 Qatar 12946 T 16 16
261 Qatar 12947 T 16 16
262 Qatar 12948 T 16 16
263 Qatar 12949 A 16 16
264 Qatar 12950 T 16 16
265 Qatar 12951 A 16 16
266 Qatar 12952 C 16 16
267 Qatar 12953 T 16 16
268 Qatar 12954 T 16 16
269 Qatar 12955 T 16 16
270 Qatar 12956 A 16 16
271 Qatar 12957 T 16 16
272 Qatar 12958 T 16 16
273 Qatar 12959 A 16 16
274 Qatar 12960 A 16 16
275 Qatar 12961 A 16 16
276 Qatar 12962 G 16 16
277 Qatar 12963 G 16 16
278 Qatar 12964 A 16 16
279 Qatar 12965 T 16 16
280 Qatar 12966 T 16 16
281 Qatar 12967 A 16 16
282 Qatar 12968 A 16 16
283 Qatar 12969 A 16 16
284 Qatar 12970 C 16 16
285 Qatar 12971 A 16 16
286 Qatar 12972 A 16 16
287 Qatar 12973 C 16 16
288 Qatar 12974 C 16 16
289 Qatar 12975 T 16 16
290 Qatar 12976 A 16 16
291 Qatar 12977 A 16 16
292 Qatar 12978 A 16 16
293 Qatar 12979 T 16 16
294 Qatar 12980 A 16 16
295 Qatar 12981 G 16 16
296 Qatar 12982 A 16 16
297 Qatar 12983 G 16 16
298 Qatar 12984 G 16 16
299 Qatar 12985 T 16 16
300 Qatar 12986 A 16 16
301 Qatar 12987 T 16 16
302 Qatar 12988 G 16 16
303 Qatar 12989 G 16 16
304 Qatar 12990 T 16 16
305 Qatar 12991 A 16 16
306 Qatar 12992 C 16 16
307 Qatar 12993 T 16 16
308 Qatar 12994 T 16 16
309 Qatar 12995 G 16 16
310 Qatar 12996 G 16 16
311 Qatar 12997 T 16 16
312 Qatar 12998 A 16 16
313 Qatar 12999 G 16 16
314 Qatar 13000 T 16 16
315 Qatar 13001 T 16 16
316 Qatar 13002 T 16 16
317 Qatar 13003 A 16 16
318 Qatar 13004 G 16 16
319 Qatar 13005 C 16 16
320 Qatar 13006 T 16 16
321 Qatar 13007 G 16 16
322 Qatar 13008 C 16 16
323 Qatar 13009 C 16 16
324 Qatar 13010 A 16 16
325 Qatar 13011 C 16 16
326 Qatar 13012 A 16 16
327 Qatar 13013 G 16 16
328 Qatar 13014 T 16 16
329 Qatar 13015 A 16 16
330 Qatar 13016 C 16 16
331 Qatar 13017 G 16 16
332 Qatar 13018 T 16 16
333 Qatar 13019 C 16 16
334 Qatar 13020 T 16 16
335 Qatar 13021 A 16 16
336 Qatar 13022 C 16 16
337 Qatar 13023 A 16 16
338 Qatar 13024 A 16 16