National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30 3                               1      
C   9                                        
D   18     1                                  
E   9                                        
F   12                                        
G   27       1   1                            
H                                            
I   6               1                        
K   21                                        
L   45         1         3           1        
M   6               1                        
N   21                       2                
P   18                   2           1        
Q   12                                        
R   18                                        
S   15                             1 1        
T   36               5                 1      
V   18                                        
W   3                                        
Y   15             1                         1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Portugal 12686 A 2421 2421
1 Portugal 12687 A 2421 2421
2 Portugal 12688 T 2421 2421
3 Portugal 12689 A 2421 2421
4 Portugal 12690 A 2421 2421
5 Portugal 12691 T 2421 2421
6 Portugal 12692 G 2421 2421
7 Portugal 12693 A 2421 2421
8 Portugal 12694 G 2421 2421
9 Portugal 12695 C 2421 2421
10 Portugal 12696 T 2421 2421
11 Portugal 12697 T 2421 2421
12 Portugal 12698 A 2421 2421
13 Portugal 12699 G 2421 2421
14 Portugal 12700 T G 2421 2420 Ser4145Arg
15 Portugal 12701 C 2421 2421
16 Portugal 12702 C 2421 2421
17 Portugal 12703 T 2421 2421
18 Portugal 12704 G 2421 2421
19 Portugal 12705 T 2421 2421
20 Portugal 12706 T 2421 2421
21 Portugal 12707 G 2421 2421
22 Portugal 12708 C 2421 2421
23 Portugal 12709 A 2421 2421
24 Portugal 12710 C 2421 2421
25 Portugal 12711 T 2421 2421
26 Portugal 12712 A 2421 2421
27 Portugal 12713 C 2421 2421
28 Portugal 12714 G 2421 2421
29 Portugal 12715 A 2421 2421
30 Portugal 12716 C 2421 2421
31 Portugal 12717 A 2421 2421
32 Portugal 12718 G 2422 2422
33 Portugal 12719 A 2422 2422
34 Portugal 12720 T 2422 2422
35 Portugal 12721 G 2422 2422
36 Portugal 12722 T 2422 2422
37 Portugal 12723 C 2422 2422
38 Portugal 12724 T 2422 2422
39 Portugal 12725 T 2422 2422
40 Portugal 12726 G 2422 2422
41 Portugal 12727 T 2422 2422
42 Portugal 12728 G 2422 2422
43 Portugal 12729 C 2422 2422
44 Portugal 12730 T 2422 2422
45 Portugal 12731 G 2422 2422
46 Portugal 12732 C 2422 2422
47 Portugal 12733 C T 2422 2421 Ala4156Ala
48 Portugal 12734 G 2422 2422
49 Portugal 12735 G 2422 2422
50 Portugal 12736 T 2422 2422
51 Portugal 12737 A 2422 2422
52 Portugal 12738 C 2422 2422
53 Portugal 12739 T 2422 2422
54 Portugal 12740 A 2422 2422
55 Portugal 12741 C T 2422 2417 Thr4159Ile
56 Portugal 12742 A G 2422 2420 Thr4159Thr
57 Portugal 12743 C 2422 2422
58 Portugal 12744 A 2422 2422
59 Portugal 12745 A 2422 2422
60 Portugal 12746 A 2422 2422
61 Portugal 12747 C 2422 2422
62 Portugal 12748 T 2422 2422
63 Portugal 12749 G A 2422 2421 Ala4162Thr
64 Portugal 12750 C 2422 2422
65 Portugal 12751 T 2422 2422
66 Portugal 12752 T 2421 2421
67 Portugal 12753 G 2421 2421
68 Portugal 12754 C 2421 2421
69 Portugal 12755 A 2421 2421
70 Portugal 12756 C 2421 2421
71 Portugal 12757 T 2421 2421
72 Portugal 12758 G 2421 2421
73 Portugal 12759 A 2421 2421
74 Portugal 12760 T 2421 2421
75 Portugal 12761 G 2421 2421
76 Portugal 12762 A 2421 2421
77 Portugal 12763 C T 2421 2420 Asp4166Asp
78 Portugal 12764 A 2421 2421
79 Portugal 12765 A 2420 2420
80 Portugal 12766 T 2420 2420
81 Portugal 12767 G 2420 2420
82 Portugal 12768 C 2420 2420
83 Portugal 12769 G T 2420 2419 Ala4168Ala
84 Portugal 12770 T 2420 2420
85 Portugal 12771 T 2420 2420
86 Portugal 12772 A G 2420 2419 Leu4169Leu
87 Portugal 12773 G 2420 2420
88 Portugal 12774 C 2420 2420
89 Portugal 12775 T 2420 2420
90 Portugal 12776 T 2420 2420
91 Portugal 12777 A 2420 2420
92 Portugal 12778 C T 2419 2409 Tyr4171Tyr
93 Portugal 12779 T 2419 2419
94 Portugal 12780 A 2419 2419
95 Portugal 12781 C 2419 2419
96 Portugal 12782 A 2419 2419
97 Portugal 12783 A 2419 2419
98 Portugal 12784 C T 2419 2418 Asn4173Asn
99 Portugal 12785 A 2419 2419
100 Portugal 12786 C 2419 2419
101 Portugal 12787 A 2419 2419
102 Portugal 12788 A 2419 2419
103 Portugal 12789 C T 2419 2415 Thr4175Ile
104 Portugal 12790 A 2419 2419
105 Portugal 12791 A 2419 2419
106 Portugal 12792 A 2419 2419
107 Portugal 12793 G 2419 2419
108 Portugal 12794 G 2419 2419
109 Portugal 12795 G 2418 2418
110 Portugal 12796 A 2417 2416
111 Portugal 12797 G 2417 2416
112 Portugal 12798 G 2417 2416
113 Portugal 12799 T 2417 2416
114 Portugal 12800 A 2416 2415
115 Portugal 12801 G 2416 2415
116 Portugal 12802 G 2416 2415
117 Portugal 12803 T 2416 2415
118 Portugal 12804 T 2416 2414
119 Portugal 12805 T 2416 2414
120 Portugal 12806 G 2416 2414
121 Portugal 12807 T 2416 2414
122 Portugal 12808 A 2416 2414
123 Portugal 12809 C T 2416 2412 Leu4182Phe
124 Portugal 12810 T 2416 2415
125 Portugal 12811 T 2416 2415
126 Portugal 12812 G 2416 2415
127 Portugal 12813 C 2416 2414
128 Portugal 12814 A 2416 2414
129 Portugal 12815 C T 2416 2413 Leu4184Leu
130 Portugal 12816 T 2416 2415
131 Portugal 12817 G 2416 2415
132 Portugal 12818 T 2416 2414
133 Portugal 12819 T 2416 2415
134 Portugal 12820 A 2416 2415
135 Portugal 12821 T 2416 2414
136 Portugal 12822 C 2416 2414
137 Portugal 12823 C T 2416 2409 Ser4186Ser
138 Portugal 12824 G 2416 2415
139 Portugal 12825 A 2416 2414
140 Portugal 12826 T 2416 2415
141 Portugal 12827 T 2416 2415
142 Portugal 12828 T 2416 2415
143 Portugal 12829 A 2416 2415
144 Portugal 12830 C 2416 2415
145 Portugal 12831 A 2416 2415
146 Portugal 12832 G 2416 2415
147 Portugal 12833 G 2416 2415
148 Portugal 12834 A 2416 2415
149 Portugal 12835 T 2416 2415
150 Portugal 12836 T 2416 2415
151 Portugal 12837 T 2416 2415
152 Portugal 12838 G 2416 2415
153 Portugal 12839 A 2416 2415
154 Portugal 12840 A 2416 2415
155 Portugal 12841 A 2416 2415
156 Portugal 12842 T 2416 2415
157 Portugal 12843 G 2416 2415
158 Portugal 12844 G 2416 2415
159 Portugal 12845 G 2416 2415
160 Portugal 12846 C 2416 2415
161 Portugal 12847 T 2416 2416
162 Portugal 12848 A 2416 2416
163 Portugal 12849 G 2416 2416
164 Portugal 12850 A 2416 2416
165 Portugal 12851 T 2416 2416
166 Portugal 12852 T 2416 2416
167 Portugal 12853 C 2416 2416
168 Portugal 12854 C T 2416 2414 Pro4197Ser
169 Portugal 12855 C 2416 2416
170 Portugal 12856 T 2416 2416
171 Portugal 12857 A 2416 2416
172 Portugal 12858 A 2416 2416
173 Portugal 12859 G 2416 2416
174 Portugal 12860 A 2416 2416
175 Portugal 12861 G 2416 2416
176 Portugal 12862 T 2416 2416
177 Portugal 12863 G 2416 2416
178 Portugal 12864 A 2416 2416
179 Portugal 12865 T 2416 2416
180 Portugal 12866 G 2416 2416
181 Portugal 12867 G A 2416 2415 Gly4201Glu
182 Portugal 12868 A G 2416 2415 Gly4201Gly
183 Portugal 12869 A 2416 2416
184 Portugal 12870 C 2416 2416
185 Portugal 12871 T 2416 2416
186 Portugal 12872 G 2416 2416
187 Portugal 12873 G 2416 2416
188 Portugal 12874 T 2416 2416
189 Portugal 12875 A 2416 2416
190 Portugal 12876 C T 2416 2415 Thr4204Ile
191 Portugal 12877 T 2416 2416
192 Portugal 12878 A 2415 2415
193 Portugal 12879 T 2415 2415
194 Portugal 12880 C T 2415 2414 Ile4205Ile
195 Portugal 12881 T C 2415 2414 Tyr4206His
196 Portugal 12882 A 2415 2415
197 Portugal 12883 T 2415 2415
198 Portugal 12884 A 2415 2415
199 Portugal 12885 C T 2415 2408 Thr4207Ile
200 Portugal 12886 A 2415 2415
201 Portugal 12887 G 2415 2415
202 Portugal 12888 A 2415 2415
203 Portugal 12889 A 2415 2415
204 Portugal 12890 C 2415 2415
205 Portugal 12891 T 2415 2415
206 Portugal 12892 G 2415 2415
207 Portugal 12893 G 2415 2415
208 Portugal 12894 A 2415 2415
209 Portugal 12895 A 2415 2415
210 Portugal 12896 C 2415 2415
211 Portugal 12897 C 2415 2415
212 Portugal 12898 A 2415 2415
213 Portugal 12899 C 2415 2415
214 Portugal 12900 C 2415 2415
215 Portugal 12901 T 2415 2415
216 Portugal 12902 T 2415 2415
217 Portugal 12903 G 2415 2415
218 Portugal 12904 T 2415 2415
219 Portugal 12905 A 2415 2415
220 Portugal 12906 G 2415 2415
221 Portugal 12907 G 2415 2414
222 Portugal 12908 T 2415 2415
223 Portugal 12909 T 2415 2415
224 Portugal 12910 T 2415 2415
225 Portugal 12911 G 2415 2415
226 Portugal 12912 T 2415 2415
227 Portugal 12913 T 2415 2415
228 Portugal 12914 A 2415 2415
229 Portugal 12915 C 2415 2415
230 Portugal 12916 A 2415 2415
231 Portugal 12917 G 2415 2415
232 Portugal 12918 A 2415 2415
233 Portugal 12919 C 2415 2415
234 Portugal 12920 A 2415 2415
235 Portugal 12921 C 2415 2415
236 Portugal 12922 A 2415 2415
237 Portugal 12923 C 2414 2413
238 Portugal 12924 C T 2414 2413 Pro4220Leu
239 Portugal 12925 T 2414 2414
240 Portugal 12926 A 2414 2414
241 Portugal 12927 A 2413 2413
242 Portugal 12928 A 2413 2413
243 Portugal 12929 G 2413 2413
244 Portugal 12930 G 2413 2413
245 Portugal 12931 T 2412 2412
246 Portugal 12932 C 2412 2412
247 Portugal 12933 C T 2412 2410 Pro4223Leu
248 Portugal 12934 T 2412 2412
249 Portugal 12935 A 2412 2412
250 Portugal 12936 A 2412 2412
251 Portugal 12937 A 2412 2412
252 Portugal 12938 G 2412 2412
253 Portugal 12939 T 2412 2412
254 Portugal 12940 G 2412 2412
255 Portugal 12941 A 2412 2412
256 Portugal 12942 A 2412 2412
257 Portugal 12943 G 2412 2412
258 Portugal 12944 T 2412 2411
259 Portugal 12945 A 2412 2412
260 Portugal 12946 T 2412 2412
261 Portugal 12947 T 2412 2412
262 Portugal 12948 T 2412 2412
263 Portugal 12949 A 2412 2411
264 Portugal 12950 T 2411 2411
265 Portugal 12951 A 2411 2411
266 Portugal 12952 C 2410 2410
267 Portugal 12953 T 2410 2410
268 Portugal 12954 T 2410 2410
269 Portugal 12955 T 2410 2410
270 Portugal 12956 A 2409 2409
271 Portugal 12957 T 2409 2409
272 Portugal 12958 T 2409 2409
273 Portugal 12959 A 2409 2408
274 Portugal 12960 A 2409 2409
275 Portugal 12961 A 2409 2409
276 Portugal 12962 G 2409 2409
277 Portugal 12963 G 2409 2409
278 Portugal 12964 A 2409 2409
279 Portugal 12965 T 2409 2409
280 Portugal 12966 T 2409 2409
281 Portugal 12967 A 2409 2409
282 Portugal 12968 A 2409 2409
283 Portugal 12969 A 2409 2409
284 Portugal 12970 C T 2409 2402 Asn4235Asn
285 Portugal 12971 A 2409 2409
286 Portugal 12972 A 2408 2408
287 Portugal 12973 C 2408 2408
288 Portugal 12974 C 2408 2408
289 Portugal 12975 T 2408 2408
290 Portugal 12976 A 2408 2408
291 Portugal 12977 A 2408 2408
292 Portugal 12978 A 2408 2408
293 Portugal 12979 T 2408 2408
294 Portugal 12980 A 2407 2407
295 Portugal 12981 G 2407 2407
296 Portugal 12982 A 2407 2406
297 Portugal 12983 G 2407 2406
298 Portugal 12984 G 2407 2407
299 Portugal 12985 T 2407 2407
300 Portugal 12986 A 2407 2407
301 Portugal 12987 T 2407 2407
302 Portugal 12988 G T 2407 2403 Met4241Ile
303 Portugal 12989 G 2407 2407
304 Portugal 12990 T 2407 2406
305 Portugal 12991 A 2407 2407
306 Portugal 12992 C 2407 2407
307 Portugal 12993 T 2407 2405
308 Portugal 12994 T 2407 2406
309 Portugal 12995 G 2407 2407
310 Portugal 12996 G 2407 2407
311 Portugal 12997 T 2407 2406
312 Portugal 12998 A 2407 2406
313 Portugal 12999 G 2407 2406
314 Portugal 13000 T 2407 2406
315 Portugal 13001 T 2407 2406
316 Portugal 13002 T C 2407 2405 Leu4246Ser
317 Portugal 13003 A 2407 2405
318 Portugal 13004 G 2407 2404
319 Portugal 13005 C 2407 2405
320 Portugal 13006 T C 2407 2396 Ala4247Ala
321 Portugal 13007 G 2407 2406
322 Portugal 13008 C 2407 2406
323 Portugal 13009 C 2407 2406
324 Portugal 13010 A 2407 2406
325 Portugal 13011 C T 2407 2405 Thr4249Ile
326 Portugal 13012 A 2407 2406
327 Portugal 13013 G 2407 2407
328 Portugal 13014 T 2407 2407
329 Portugal 13015 A 2407 2407
330 Portugal 13016 C 2407 2407
331 Portugal 13017 G 2407 2407
332 Portugal 13018 T 2407 2407
333 Portugal 13019 C T 2407 2406 Leu4252Leu
334 Portugal 13020 T 2407 2407
335 Portugal 13021 A 2407 2407
336 Portugal 13022 C 2407 2407
337 Portugal 13023 A 2407 2407
338 Portugal 13024 A 2407 2407