National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                               1      
C   9                                      
D   18                     1                
E   9                                      
F   12                                      
G   27                           1          
I   6                                      
K   21                                      
L   45         1   1   1                    
M   6             1                        
N   21                                      
P   18                 1           1        
Q   12                                      
R   18                                      
S   15                                      
T   36             1                        
V   18                                      
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Poland 12686 A 434 434
1 Poland 12687 A 434 434
2 Poland 12688 T 434 434
3 Poland 12689 A 434 434
4 Poland 12690 A 434 434
5 Poland 12691 T 434 434
6 Poland 12692 G 434 434
7 Poland 12693 A 434 434
8 Poland 12694 G 434 434
9 Poland 12695 C 434 434
10 Poland 12696 T 434 434
11 Poland 12697 T 434 434
12 Poland 12698 A 434 434
13 Poland 12699 G 434 434
14 Poland 12700 T 434 434
15 Poland 12701 C 434 434
16 Poland 12702 C 434 434
17 Poland 12703 T 434 434
18 Poland 12704 G 434 434
19 Poland 12705 T 434 434
20 Poland 12706 T 434 434
21 Poland 12707 G 434 434
22 Poland 12708 C 434 434
23 Poland 12709 A 434 434
24 Poland 12710 C 434 434
25 Poland 12711 T 434 434
26 Poland 12712 A 434 434
27 Poland 12713 C 434 434
28 Poland 12714 G 434 434
29 Poland 12715 A 434 434
30 Poland 12716 C 434 434
31 Poland 12717 A 434 434
32 Poland 12718 G 434 434
33 Poland 12719 A 434 434
34 Poland 12720 T 434 434
35 Poland 12721 G 434 434
36 Poland 12722 T 434 434
37 Poland 12723 C 434 434
38 Poland 12724 T 434 434
39 Poland 12725 T 434 434
40 Poland 12726 G 434 434
41 Poland 12727 T 434 434
42 Poland 12728 G A 434 433 Ala4155Thr
43 Poland 12729 C 434 434
44 Poland 12730 T 434 434
45 Poland 12731 G 434 434
46 Poland 12732 C 434 434
47 Poland 12733 C 434 434
48 Poland 12734 G 434 434
49 Poland 12735 G 434 434
50 Poland 12736 T 434 434
51 Poland 12737 A 434 434
52 Poland 12738 C 434 434
53 Poland 12739 T 434 434
54 Poland 12740 A 434 434
55 Poland 12741 C 434 434
56 Poland 12742 A 434 434
57 Poland 12743 C 434 434
58 Poland 12744 A 434 434
59 Poland 12745 A 434 434
60 Poland 12746 A 434 434
61 Poland 12747 C 434 434
62 Poland 12748 T 434 434
63 Poland 12749 G 434 434
64 Poland 12750 C 434 434
65 Poland 12751 T 434 434
66 Poland 12752 T 434 434
67 Poland 12753 G 434 434
68 Poland 12754 C 434 434
69 Poland 12755 A 434 434
70 Poland 12756 C 434 434
71 Poland 12757 T 434 434
72 Poland 12758 G 434 434
73 Poland 12759 A 434 434
74 Poland 12760 T 434 434
75 Poland 12761 G 434 434
76 Poland 12762 A 434 434
77 Poland 12763 C 434 434
78 Poland 12764 A 434 434
79 Poland 12765 A 434 434
80 Poland 12766 T 434 434
81 Poland 12767 G 434 434
82 Poland 12768 C 434 434
83 Poland 12769 G 434 434
84 Poland 12770 T 434 434
85 Poland 12771 T 434 434
86 Poland 12772 A 434 434
87 Poland 12773 G 434 434
88 Poland 12774 C 434 434
89 Poland 12775 T 434 434
90 Poland 12776 T 434 434
91 Poland 12777 A 434 434
92 Poland 12778 C T 434 433 Tyr4171Tyr
93 Poland 12779 T 434 434
94 Poland 12780 A 434 434
95 Poland 12781 C 434 434
96 Poland 12782 A 434 434
97 Poland 12783 A 434 434
98 Poland 12784 C 434 434
99 Poland 12785 A 434 434
100 Poland 12786 C 434 434
101 Poland 12787 A 434 434
102 Poland 12788 A 434 434
103 Poland 12789 C 434 434
104 Poland 12790 A 434 434
105 Poland 12791 A 434 434
106 Poland 12792 A 434 434
107 Poland 12793 G 434 434
108 Poland 12794 G A 434 433 Gly4177Arg
109 Poland 12795 G 434 434
110 Poland 12796 A 434 434
111 Poland 12797 G 434 434
112 Poland 12798 G 434 434
113 Poland 12799 T 434 434
114 Poland 12800 A 434 434
115 Poland 12801 G 434 434
116 Poland 12802 G 434 434
117 Poland 12803 T 434 434
118 Poland 12804 T 434 434
119 Poland 12805 T 434 434
120 Poland 12806 G 434 434
121 Poland 12807 T 434 434
122 Poland 12808 A 434 434
123 Poland 12809 C T,A 434 432 Leu4182Phe-p.Leu4182Ile
124 Poland 12810 T 434 434
125 Poland 12811 T 434 434
126 Poland 12812 G 434 434
127 Poland 12813 C 434 434
128 Poland 12814 A 434 434
129 Poland 12815 C 434 434
130 Poland 12816 T 434 434
131 Poland 12817 G 434 434
132 Poland 12818 T 434 434
133 Poland 12819 T 434 434
134 Poland 12820 A G 434 433 Leu4185Leu
135 Poland 12821 T 434 434
136 Poland 12822 C 434 434
137 Poland 12823 C 434 434
138 Poland 12824 G A 434 427 Asp4187Asn
139 Poland 12825 A 434 434
140 Poland 12826 T 434 434
141 Poland 12827 T 434 434
142 Poland 12828 T 434 434
143 Poland 12829 A 434 434
144 Poland 12830 C 434 434
145 Poland 12831 A 434 434
146 Poland 12832 G 434 434
147 Poland 12833 G 434 434
148 Poland 12834 A 434 434
149 Poland 12835 T 434 434
150 Poland 12836 T 434 434
151 Poland 12837 T 434 434
152 Poland 12838 G 434 434
153 Poland 12839 A 434 434
154 Poland 12840 A 434 434
155 Poland 12841 A 434 434
156 Poland 12842 T 434 434
157 Poland 12843 G 434 434
158 Poland 12844 G 434 434
159 Poland 12845 G 434 434
160 Poland 12846 C 434 434
161 Poland 12847 T 434 434
162 Poland 12848 A 434 434
163 Poland 12849 G 434 434
164 Poland 12850 A 434 434
165 Poland 12851 T 434 434
166 Poland 12852 T 434 434
167 Poland 12853 C 434 434
168 Poland 12854 C 434 434
169 Poland 12855 C 434 434
170 Poland 12856 T 434 434
171 Poland 12857 A 434 434
172 Poland 12858 A 434 434
173 Poland 12859 G 434 434
174 Poland 12860 A 434 434
175 Poland 12861 G 434 434
176 Poland 12862 T 434 434
177 Poland 12863 G 434 434
178 Poland 12864 A 434 434
179 Poland 12865 T 434 434
180 Poland 12866 G 434 434
181 Poland 12867 G 434 434
182 Poland 12868 A 434 434
183 Poland 12869 A 434 434
184 Poland 12870 C 434 434
185 Poland 12871 T 434 434
186 Poland 12872 G 434 434
187 Poland 12873 G 434 434
188 Poland 12874 T 434 434
189 Poland 12875 A 434 434
190 Poland 12876 C 434 434
191 Poland 12877 T 434 434
192 Poland 12878 A 434 434
193 Poland 12879 T 434 434
194 Poland 12880 C 434 434
195 Poland 12881 T 434 434
196 Poland 12882 A 434 434
197 Poland 12883 T 434 434
198 Poland 12884 A 434 434
199 Poland 12885 C T 434 433 Thr4207Ile
200 Poland 12886 A 434 434
201 Poland 12887 G 434 434
202 Poland 12888 A 434 434
203 Poland 12889 A 434 434
204 Poland 12890 C 434 434
205 Poland 12891 T 434 434
206 Poland 12892 G 434 434
207 Poland 12893 G 434 434
208 Poland 12894 A 434 434
209 Poland 12895 A 434 434
210 Poland 12896 C T 434 433 Pro4211Ser
211 Poland 12897 C 434 434
212 Poland 12898 A 434 434
213 Poland 12899 C 434 434
214 Poland 12900 C 434 434
215 Poland 12901 T 434 434
216 Poland 12902 T 434 434
217 Poland 12903 G 434 434
218 Poland 12904 T 434 434
219 Poland 12905 A 434 434
220 Poland 12906 G 434 434
221 Poland 12907 G 434 434
222 Poland 12908 T 434 434
223 Poland 12909 T 434 434
224 Poland 12910 T 434 434
225 Poland 12911 G 434 434
226 Poland 12912 T 434 434
227 Poland 12913 T 434 434
228 Poland 12914 A 434 434
229 Poland 12915 C 434 434
230 Poland 12916 A 434 434
231 Poland 12917 G 434 434
232 Poland 12918 A 434 434
233 Poland 12919 C 434 434
234 Poland 12920 A 434 434
235 Poland 12921 C 434 434
236 Poland 12922 A 434 434
237 Poland 12923 C 434 434
238 Poland 12924 C T 434 432 Pro4220Leu
239 Poland 12925 T 434 434
240 Poland 12926 A 434 434
241 Poland 12927 A 434 434
242 Poland 12928 A 434 434
243 Poland 12929 G 434 434
244 Poland 12930 G 434 434
245 Poland 12931 T 434 434
246 Poland 12932 C 434 434
247 Poland 12933 C 434 434
248 Poland 12934 T 434 434
249 Poland 12935 A 434 434
250 Poland 12936 A 434 434
251 Poland 12937 A 434 434
252 Poland 12938 G 434 434
253 Poland 12939 T 434 434
254 Poland 12940 G 434 434
255 Poland 12941 A 434 434
256 Poland 12942 A 434 434
257 Poland 12943 G 434 434
258 Poland 12944 T 434 434
259 Poland 12945 A 434 434
260 Poland 12946 T 434 434
261 Poland 12947 T 434 434
262 Poland 12948 T 434 434
263 Poland 12949 A 434 434
264 Poland 12950 T 434 434
265 Poland 12951 A 434 434
266 Poland 12952 C 434 434
267 Poland 12953 T 434 434
268 Poland 12954 T 434 434
269 Poland 12955 T 434 434
270 Poland 12956 A 434 434
271 Poland 12957 T 434 434
272 Poland 12958 T 434 434
273 Poland 12959 A 434 434
274 Poland 12960 A 434 434
275 Poland 12961 A 434 434
276 Poland 12962 G 434 434
277 Poland 12963 G 434 434
278 Poland 12964 A 434 434
279 Poland 12965 T 434 434
280 Poland 12966 T 434 434
281 Poland 12967 A 434 434
282 Poland 12968 A 434 434
283 Poland 12969 A 434 434
284 Poland 12970 C 434 434
285 Poland 12971 A 434 434
286 Poland 12972 A 434 434
287 Poland 12973 C 434 434
288 Poland 12974 C 434 434
289 Poland 12975 T 434 434
290 Poland 12976 A 434 434
291 Poland 12977 A 434 434
292 Poland 12978 A 434 434
293 Poland 12979 T 434 434
294 Poland 12980 A 434 434
295 Poland 12981 G 434 434
296 Poland 12982 A 434 434
297 Poland 12983 G 434 434
298 Poland 12984 G 434 434
299 Poland 12985 T 434 434
300 Poland 12986 A 434 434
301 Poland 12987 T 434 434
302 Poland 12988 G T 434 386 Met4241Ile
303 Poland 12989 G 434 434
304 Poland 12990 T 434 434
305 Poland 12991 A 434 434
306 Poland 12992 C 434 434
307 Poland 12993 T 434 434
308 Poland 12994 T 434 434
309 Poland 12995 G 434 434
310 Poland 12996 G 434 434
311 Poland 12997 T 434 434
312 Poland 12998 A 434 434
313 Poland 12999 G 434 434
314 Poland 13000 T 434 434
315 Poland 13001 T 434 434
316 Poland 13002 T 434 434
317 Poland 13003 A 434 434
318 Poland 13004 G 434 434
319 Poland 13005 C 434 434
320 Poland 13006 T 434 434
321 Poland 13007 G 434 434
322 Poland 13008 C 434 434
323 Poland 13009 C 434 434
324 Poland 13010 A 434 434
325 Poland 13011 C 434 434
326 Poland 13012 A 434 434
327 Poland 13013 G 434 434
328 Poland 13014 T 434 434
329 Poland 13015 A 434 434
330 Poland 13016 C 434 434
331 Poland 13017 G 434 434
332 Poland 13018 T 434 434
333 Poland 13019 C 434 434
334 Poland 13020 T 434 434
335 Poland 13021 A 434 434
336 Poland 13022 C 434 434
337 Poland 13023 A 434 434
338 Poland 13024 A 434 434