National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                 1    
C   9                                      
D   18     1                                
E   9                                      
F   12                                      
G   27                             1        
I   6             1                        
K   21                                      
L   45                 3                    
M   6                                      
N   21                     1                
P   18                             2        
Q   12                                      
R   18                                      
S   15                                      
T   36             1                        
V   18                                 1    
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Peru 12686 A 528 528
1 Peru 12687 A 528 528
2 Peru 12688 T 528 528
3 Peru 12689 A 528 528
4 Peru 12690 A 528 528
5 Peru 12691 T 528 528
6 Peru 12692 G 528 528
7 Peru 12693 A 528 528
8 Peru 12694 G 528 528
9 Peru 12695 C 528 528
10 Peru 12696 T 528 528
11 Peru 12697 T 528 528
12 Peru 12698 A 528 528
13 Peru 12699 G 528 528
14 Peru 12700 T 528 528
15 Peru 12701 C 528 528
16 Peru 12702 C 528 528
17 Peru 12703 T 528 528
18 Peru 12704 G 528 528
19 Peru 12705 T 528 528
20 Peru 12706 T C 528 527 Val4147Val
21 Peru 12707 G 528 528
22 Peru 12708 C 528 528
23 Peru 12709 A 528 528
24 Peru 12710 C 528 528
25 Peru 12711 T 528 528
26 Peru 12712 A 528 528
27 Peru 12713 C 528 528
28 Peru 12714 G 528 528
29 Peru 12715 A 528 528
30 Peru 12716 C 528 528
31 Peru 12717 A 528 528
32 Peru 12718 G 528 528
33 Peru 12719 A 528 528
34 Peru 12720 T 528 528
35 Peru 12721 G 528 528
36 Peru 12722 T 528 528
37 Peru 12723 C 528 528
38 Peru 12724 T 528 528
39 Peru 12725 T 528 528
40 Peru 12726 G 528 528
41 Peru 12727 T 528 528
42 Peru 12728 G 528 528
43 Peru 12729 C 528 528
44 Peru 12730 T 528 528
45 Peru 12731 G 528 528
46 Peru 12732 C 528 528
47 Peru 12733 C 528 528
48 Peru 12734 G 528 528
49 Peru 12735 G 528 528
50 Peru 12736 T 528 528
51 Peru 12737 A 528 528
52 Peru 12738 C 528 528
53 Peru 12739 T 528 528
54 Peru 12740 A 528 528
55 Peru 12741 C 528 528
56 Peru 12742 A 528 528
57 Peru 12743 C 528 528
58 Peru 12744 A 528 528
59 Peru 12745 A 528 528
60 Peru 12746 A 528 528
61 Peru 12747 C 528 528
62 Peru 12748 T 528 528
63 Peru 12749 G 528 528
64 Peru 12750 C 528 528
65 Peru 12751 T 528 528
66 Peru 12752 T 528 528
67 Peru 12753 G 528 528
68 Peru 12754 C 528 528
69 Peru 12755 A 528 528
70 Peru 12756 C 528 528
71 Peru 12757 T 528 528
72 Peru 12758 G 528 528
73 Peru 12759 A 528 528
74 Peru 12760 T 528 528
75 Peru 12761 G 528 528
76 Peru 12762 A 528 528
77 Peru 12763 C 528 528
78 Peru 12764 A 528 528
79 Peru 12765 A 528 528
80 Peru 12766 T 528 528
81 Peru 12767 G 528 528
82 Peru 12768 C 528 528
83 Peru 12769 G 528 528
84 Peru 12770 T 528 528
85 Peru 12771 T 528 528
86 Peru 12772 A 528 528
87 Peru 12773 G 528 528
88 Peru 12774 C 528 528
89 Peru 12775 T 528 528
90 Peru 12776 T 528 528
91 Peru 12777 A 528 528
92 Peru 12778 C 528 528
93 Peru 12779 T 528 528
94 Peru 12780 A 528 528
95 Peru 12781 C T 528 524 Tyr4172Tyr
96 Peru 12782 A 528 528
97 Peru 12783 A 528 528
98 Peru 12784 C 528 528
99 Peru 12785 A 528 528
100 Peru 12786 C 528 528
101 Peru 12787 A 528 528
102 Peru 12788 A 528 528
103 Peru 12789 C T 528 527 Thr4175Ile
104 Peru 12790 A 528 528
105 Peru 12791 A 528 528
106 Peru 12792 A 528 528
107 Peru 12793 G 528 528
108 Peru 12794 G 528 528
109 Peru 12795 G 528 528
110 Peru 12796 A 528 528
111 Peru 12797 G A 528 524 Gly4178Ser
112 Peru 12798 G 528 528
113 Peru 12799 T 528 528
114 Peru 12800 A 528 528
115 Peru 12801 G 528 528
116 Peru 12802 G 528 528
117 Peru 12803 T 528 528
118 Peru 12804 T 528 528
119 Peru 12805 T 528 528
120 Peru 12806 G 528 528
121 Peru 12807 T 528 528
122 Peru 12808 A 528 528
123 Peru 12809 C 528 528
124 Peru 12810 T 528 528
125 Peru 12811 T 528 528
126 Peru 12812 G 528 528
127 Peru 12813 C 528 528
128 Peru 12814 A 528 528
129 Peru 12815 C 528 528
130 Peru 12816 T 528 528
131 Peru 12817 G 528 528
132 Peru 12818 T 528 528
133 Peru 12819 T 528 528
134 Peru 12820 A G 528 522 Leu4185Leu
135 Peru 12821 T 528 528
136 Peru 12822 C 528 528
137 Peru 12823 C 528 528
138 Peru 12824 G 528 528
139 Peru 12825 A 528 528
140 Peru 12826 T C 528 527 Asp4187Asp
141 Peru 12827 T 528 528
142 Peru 12828 T 528 528
143 Peru 12829 A 528 528
144 Peru 12830 C 528 528
145 Peru 12831 A 528 528
146 Peru 12832 G 528 528
147 Peru 12833 G 528 528
148 Peru 12834 A 528 528
149 Peru 12835 T 528 528
150 Peru 12836 T 528 528
151 Peru 12837 T 528 528
152 Peru 12838 G 528 528
153 Peru 12839 A 528 528
154 Peru 12840 A 528 528
155 Peru 12841 A 528 528
156 Peru 12842 T 528 528
157 Peru 12843 G 528 528
158 Peru 12844 G 528 528
159 Peru 12845 G 528 528
160 Peru 12846 C 528 528
161 Peru 12847 T 528 528
162 Peru 12848 A 528 528
163 Peru 12849 G 528 528
164 Peru 12850 A 528 528
165 Peru 12851 T 528 528
166 Peru 12852 T 528 528
167 Peru 12853 C 528 528
168 Peru 12854 C T 528 515 Pro4197Ser
169 Peru 12855 C 528 528
170 Peru 12856 T 528 528
171 Peru 12857 A 528 528
172 Peru 12858 A 528 528
173 Peru 12859 G 528 528
174 Peru 12860 A 528 528
175 Peru 12861 G 528 528
176 Peru 12862 T 528 528
177 Peru 12863 G 528 528
178 Peru 12864 A 528 528
179 Peru 12865 T 528 528
180 Peru 12866 G 528 528
181 Peru 12867 G 528 528
182 Peru 12868 A 528 528
183 Peru 12869 A 528 528
184 Peru 12870 C 528 528
185 Peru 12871 T 528 528
186 Peru 12872 G 528 528
187 Peru 12873 G 528 528
188 Peru 12874 T 528 528
189 Peru 12875 A 528 528
190 Peru 12876 C 528 528
191 Peru 12877 T 528 528
192 Peru 12878 A 528 528
193 Peru 12879 T 528 528
194 Peru 12880 C T 528 527 Ile4205Ile
195 Peru 12881 T 528 528
196 Peru 12882 A 528 528
197 Peru 12883 T 528 528
198 Peru 12884 A 528 528
199 Peru 12885 C 528 528
200 Peru 12886 A 528 528
201 Peru 12887 G 528 528
202 Peru 12888 A 528 528
203 Peru 12889 A 528 528
204 Peru 12890 C 528 528
205 Peru 12891 T 528 528
206 Peru 12892 G A 528 525 Leu4209Leu
207 Peru 12893 G 528 528
208 Peru 12894 A 528 528
209 Peru 12895 A 528 528
210 Peru 12896 C 528 528
211 Peru 12897 C 528 528
212 Peru 12898 A 528 528
213 Peru 12899 C 528 528
214 Peru 12900 C 528 528
215 Peru 12901 T 528 528
216 Peru 12902 T 528 528
217 Peru 12903 G 528 528
218 Peru 12904 T 528 528
219 Peru 12905 A 528 528
220 Peru 12906 G 528 528
221 Peru 12907 G 528 528
222 Peru 12908 T 528 528
223 Peru 12909 T 528 528
224 Peru 12910 T 528 528
225 Peru 12911 G 528 528
226 Peru 12912 T 528 528
227 Peru 12913 T 528 528
228 Peru 12914 A 528 528
229 Peru 12915 C 528 528
230 Peru 12916 A 528 528
231 Peru 12917 G 528 528
232 Peru 12918 A 528 528
233 Peru 12919 C 528 528
234 Peru 12920 A 528 528
235 Peru 12921 C 528 528
236 Peru 12922 A 528 528
237 Peru 12923 C T 528 527 Pro4220Ser
238 Peru 12924 C 528 528
239 Peru 12925 T 528 528
240 Peru 12926 A 528 528
241 Peru 12927 A 528 528
242 Peru 12928 A 528 528
243 Peru 12929 G 528 528
244 Peru 12930 G 528 528
245 Peru 12931 T 528 528
246 Peru 12932 C 528 528
247 Peru 12933 C 528 528
248 Peru 12934 T 528 528
249 Peru 12935 A 528 528
250 Peru 12936 A 528 528
251 Peru 12937 A 528 528
252 Peru 12938 G 528 528
253 Peru 12939 T 528 528
254 Peru 12940 G 528 528
255 Peru 12941 A 528 528
256 Peru 12942 A 528 528
257 Peru 12943 G 528 528
258 Peru 12944 T 528 528
259 Peru 12945 A 528 528
260 Peru 12946 T 528 528
261 Peru 12947 T 528 528
262 Peru 12948 T 528 528
263 Peru 12949 A 528 528
264 Peru 12950 T 528 528
265 Peru 12951 A 528 528
266 Peru 12952 C 528 528
267 Peru 12953 T 528 528
268 Peru 12954 T 528 528
269 Peru 12955 T 528 528
270 Peru 12956 A 528 528
271 Peru 12957 T 528 528
272 Peru 12958 T 528 528
273 Peru 12959 A 528 528
274 Peru 12960 A 528 528
275 Peru 12961 A 528 528
276 Peru 12962 G 528 528
277 Peru 12963 G 528 528
278 Peru 12964 A 528 528
279 Peru 12965 T 528 528
280 Peru 12966 T 528 528
281 Peru 12967 A 528 528
282 Peru 12968 A 528 528
283 Peru 12969 A 528 528
284 Peru 12970 C T 528 524 Asn4235Asn
285 Peru 12971 A 528 528
286 Peru 12972 A 528 528
287 Peru 12973 C 528 528
288 Peru 12974 C T 528 527 Leu4237Leu
289 Peru 12975 T 528 528
290 Peru 12976 A 528 528
291 Peru 12977 A 528 528
292 Peru 12978 A 528 528
293 Peru 12979 T 528 528
294 Peru 12980 A 528 528
295 Peru 12981 G 528 528
296 Peru 12982 A 528 528
297 Peru 12983 G 528 528
298 Peru 12984 G 528 528
299 Peru 12985 T 528 528
300 Peru 12986 A 528 528
301 Peru 12987 T 528 528
302 Peru 12988 G 528 528
303 Peru 12989 G 528 528
304 Peru 12990 T 528 528
305 Peru 12991 A 528 528
306 Peru 12992 C 528 528
307 Peru 12993 T 528 528
308 Peru 12994 T 528 528
309 Peru 12995 G 528 528
310 Peru 12996 G 528 528
311 Peru 12997 T 528 528
312 Peru 12998 A 528 528
313 Peru 12999 G 528 528
314 Peru 13000 T 528 528
315 Peru 13001 T 528 528
316 Peru 13002 T 528 528
317 Peru 13003 A 528 528
318 Peru 13004 G 528 528
319 Peru 13005 C T 528 526 Ala4247Val
320 Peru 13006 T 528 528
321 Peru 13007 G 528 528
322 Peru 13008 C 528 528
323 Peru 13009 C 528 528
324 Peru 13010 A 528 528
325 Peru 13011 C 528 528
326 Peru 13012 A 528 528
327 Peru 13013 G 528 528
328 Peru 13014 T 528 528
329 Peru 13015 A 526 526
330 Peru 13016 C 526 526
331 Peru 13017 G 526 526
332 Peru 13018 T 526 526
333 Peru 13019 C 526 526
334 Peru 13020 T 526 526
335 Peru 13021 A 526 526
336 Peru 13022 C 526 526
337 Peru 13023 A 526 526
338 Peru 13024 A 525 525