National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18           1                          
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                     1                
L   45                 1                    
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                               1      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Panama 12686 A 309 309
1 Panama 12687 A 309 309
2 Panama 12688 T 309 309
3 Panama 12689 A 309 309
4 Panama 12690 A 309 309
5 Panama 12691 T 309 309
6 Panama 12692 G 309 309
7 Panama 12693 A 309 309
8 Panama 12694 G 309 309
9 Panama 12695 C 309 309
10 Panama 12696 T 309 309
11 Panama 12697 T 309 309
12 Panama 12698 A 309 308
13 Panama 12699 G 309 309
14 Panama 12700 T 309 309
15 Panama 12701 C 309 309
16 Panama 12702 C 309 309
17 Panama 12703 T 309 309
18 Panama 12704 G 309 309
19 Panama 12705 T 309 309
20 Panama 12706 T 309 308
21 Panama 12707 G 309 309
22 Panama 12708 C 309 309
23 Panama 12709 A 309 308
24 Panama 12710 C 309 309
25 Panama 12711 T 309 309
26 Panama 12712 A 309 309
27 Panama 12713 C 309 309
28 Panama 12714 G 310 310
29 Panama 12715 A 310 309
30 Panama 12716 C 314 314
31 Panama 12717 A 314 314
32 Panama 12718 G 314 314
33 Panama 12719 A 314 314
34 Panama 12720 T 314 314
35 Panama 12721 G 314 314
36 Panama 12722 T 314 314
37 Panama 12723 C 314 314
38 Panama 12724 T 314 314
39 Panama 12725 T 314 314
40 Panama 12726 G 314 314
41 Panama 12727 T 314 314
42 Panama 12728 G 314 314
43 Panama 12729 C 314 314
44 Panama 12730 T 314 314
45 Panama 12731 G 314 314
46 Panama 12732 C 314 314
47 Panama 12733 C 314 314
48 Panama 12734 G 314 314
49 Panama 12735 G 314 314
50 Panama 12736 T 314 314
51 Panama 12737 A 314 314
52 Panama 12738 C 314 314
53 Panama 12739 T 314 314
54 Panama 12740 A 314 314
55 Panama 12741 C 314 313
56 Panama 12742 A 314 314
57 Panama 12743 C 314 314
58 Panama 12744 A 314 314
59 Panama 12745 A 314 314
60 Panama 12746 A 314 314
61 Panama 12747 C 314 314
62 Panama 12748 T 314 314
63 Panama 12749 G 314 314
64 Panama 12750 C 314 314
65 Panama 12751 T 314 314
66 Panama 12752 T 314 314
67 Panama 12753 G 314 314
68 Panama 12754 C 314 314
69 Panama 12755 A 314 314
70 Panama 12756 C 314 314
71 Panama 12757 T 314 314
72 Panama 12758 G 314 314
73 Panama 12759 A 314 314
74 Panama 12760 T 314 314
75 Panama 12761 G 314 314
76 Panama 12762 A 314 314
77 Panama 12763 C 314 314
78 Panama 12764 A 314 314
79 Panama 12765 A 314 314
80 Panama 12766 T 314 314
81 Panama 12767 G 314 314
82 Panama 12768 C 314 314
83 Panama 12769 G 314 314
84 Panama 12770 T 314 314
85 Panama 12771 T 314 314
86 Panama 12772 A 314 314
87 Panama 12773 G 314 314
88 Panama 12774 C 314 314
89 Panama 12775 T 314 314
90 Panama 12776 T 314 314
91 Panama 12777 A 314 314
92 Panama 12778 C 314 314
93 Panama 12779 T 314 314
94 Panama 12780 A 314 314
95 Panama 12781 C 314 314
96 Panama 12782 A 314 314
97 Panama 12783 A 314 314
98 Panama 12784 C 314 314
99 Panama 12785 A 314 314
100 Panama 12786 C 314 314
101 Panama 12787 A G 314 313 Thr4174Thr
102 Panama 12788 A 314 314
103 Panama 12789 C 314 314
104 Panama 12790 A 314 314
105 Panama 12791 A 314 314
106 Panama 12792 A 314 314
107 Panama 12793 G T 314 313 Lys4176Asn
108 Panama 12794 G 314 314
109 Panama 12795 G 314 314
110 Panama 12796 A 314 314
111 Panama 12797 G 314 314
112 Panama 12798 G 314 314
113 Panama 12799 T 314 314
114 Panama 12800 A 314 314
115 Panama 12801 G 314 314
116 Panama 12802 G 314 314
117 Panama 12803 T 314 314
118 Panama 12804 T 314 314
119 Panama 12805 T 314 314
120 Panama 12806 G 314 314
121 Panama 12807 T 314 314
122 Panama 12808 A 314 314
123 Panama 12809 C 314 314
124 Panama 12810 T 314 314
125 Panama 12811 T 314 314
126 Panama 12812 G 314 314
127 Panama 12813 C 314 314
128 Panama 12814 A 314 314
129 Panama 12815 C T 314 144 Leu4184Leu
130 Panama 12816 T 314 314
131 Panama 12817 G 314 314
132 Panama 12818 T 314 314
133 Panama 12819 T 314 314
134 Panama 12820 A 314 314
135 Panama 12821 T 314 314
136 Panama 12822 C 314 314
137 Panama 12823 C 314 314
138 Panama 12824 G 314 314
139 Panama 12825 A 314 314
140 Panama 12826 T 314 314
141 Panama 12827 T 314 314
142 Panama 12828 T 314 314
143 Panama 12829 A 314 314
144 Panama 12830 C 314 314
145 Panama 12831 A 314 314
146 Panama 12832 G 314 314
147 Panama 12833 G 314 314
148 Panama 12834 A G 314 313 Asp4190Gly
149 Panama 12835 T 314 314
150 Panama 12836 T 314 314
151 Panama 12837 T 314 314
152 Panama 12838 G 314 314
153 Panama 12839 A 314 314
154 Panama 12840 A 314 314
155 Panama 12841 A 314 314
156 Panama 12842 T 314 314
157 Panama 12843 G 314 314
158 Panama 12844 G 314 314
159 Panama 12845 G 314 314
160 Panama 12846 C 314 314
161 Panama 12847 T 314 314
162 Panama 12848 A 314 314
163 Panama 12849 G 314 314
164 Panama 12850 A 314 314
165 Panama 12851 T 314 314
166 Panama 12852 T 314 314
167 Panama 12853 C 314 314
168 Panama 12854 C 314 314
169 Panama 12855 C 314 314
170 Panama 12856 T 314 314
171 Panama 12857 A 314 314
172 Panama 12858 A 314 314
173 Panama 12859 G 314 314
174 Panama 12860 A 314 314
175 Panama 12861 G 314 314
176 Panama 12862 T 314 314
177 Panama 12863 G 314 314
178 Panama 12864 A 314 314
179 Panama 12865 T 314 314
180 Panama 12866 G 314 314
181 Panama 12867 G 314 314
182 Panama 12868 A 314 314
183 Panama 12869 A 314 314
184 Panama 12870 C 314 314
185 Panama 12871 T 314 314
186 Panama 12872 G 314 314
187 Panama 12873 G 314 314
188 Panama 12874 T 314 314
189 Panama 12875 A 314 314
190 Panama 12876 C 314 314
191 Panama 12877 T 314 314
192 Panama 12878 A 314 314
193 Panama 12879 T 314 314
194 Panama 12880 C 314 314
195 Panama 12881 T 314 314
196 Panama 12882 A 314 314
197 Panama 12883 T 314 314
198 Panama 12884 A 314 314
199 Panama 12885 C 314 314
200 Panama 12886 A 314 314
201 Panama 12887 G 314 314
202 Panama 12888 A 314 314
203 Panama 12889 A 314 314
204 Panama 12890 C 314 314
205 Panama 12891 T 314 314
206 Panama 12892 G 314 314
207 Panama 12893 G 314 314
208 Panama 12894 A 314 314
209 Panama 12895 A 314 314
210 Panama 12896 C 314 314
211 Panama 12897 C 314 314
212 Panama 12898 A 314 314
213 Panama 12899 C 314 314
214 Panama 12900 C 314 314
215 Panama 12901 T 314 314
216 Panama 12902 T 314 314
217 Panama 12903 G 314 314
218 Panama 12904 T 314 314
219 Panama 12905 A 314 314
220 Panama 12906 G 314 314
221 Panama 12907 G 314 314
222 Panama 12908 T 314 314
223 Panama 12909 T 314 314
224 Panama 12910 T 314 314
225 Panama 12911 G 314 314
226 Panama 12912 T 314 314
227 Panama 12913 T 314 314
228 Panama 12914 A 314 314
229 Panama 12915 C 314 314
230 Panama 12916 A 314 314
231 Panama 12917 G 314 314
232 Panama 12918 A 314 314
233 Panama 12919 C 314 314
234 Panama 12920 A 314 314
235 Panama 12921 C 314 314
236 Panama 12922 A 314 314
237 Panama 12923 C 314 314
238 Panama 12924 C 314 314
239 Panama 12925 T 314 314
240 Panama 12926 A 314 314
241 Panama 12927 A 314 314
242 Panama 12928 A 314 314
243 Panama 12929 G 314 314
244 Panama 12930 G 314 314
245 Panama 12931 T 314 314
246 Panama 12932 C 314 314
247 Panama 12933 C 314 314
248 Panama 12934 T 314 314
249 Panama 12935 A 314 314
250 Panama 12936 A 314 314
251 Panama 12937 A 314 314
252 Panama 12938 G 314 314
253 Panama 12939 T 314 314
254 Panama 12940 G 314 314
255 Panama 12941 A 314 314
256 Panama 12942 A 314 314
257 Panama 12943 G 314 314
258 Panama 12944 T 314 314
259 Panama 12945 A 314 314
260 Panama 12946 T 314 314
261 Panama 12947 T 314 314
262 Panama 12948 T 314 314
263 Panama 12949 A 314 314
264 Panama 12950 T 314 314
265 Panama 12951 A 314 314
266 Panama 12952 C 314 314
267 Panama 12953 T 314 314
268 Panama 12954 T 314 314
269 Panama 12955 T 314 314
270 Panama 12956 A 314 314
271 Panama 12957 T 314 314
272 Panama 12958 T 314 314
273 Panama 12959 A 314 314
274 Panama 12960 A 314 314
275 Panama 12961 A 314 314
276 Panama 12962 G 314 314
277 Panama 12963 G 314 314
278 Panama 12964 A 314 314
279 Panama 12965 T 314 314
280 Panama 12966 T 314 314
281 Panama 12967 A 314 314
282 Panama 12968 A 314 314
283 Panama 12969 A 314 314
284 Panama 12970 C 314 314
285 Panama 12971 A 314 314
286 Panama 12972 A 314 314
287 Panama 12973 C 314 314
288 Panama 12974 C 314 314
289 Panama 12975 T 314 314
290 Panama 12976 A 314 314
291 Panama 12977 A 314 314
292 Panama 12978 A 314 314
293 Panama 12979 T 314 314
294 Panama 12980 A 314 314
295 Panama 12981 G 314 314
296 Panama 12982 A 314 314
297 Panama 12983 G 314 314
298 Panama 12984 G 314 314
299 Panama 12985 T 314 314
300 Panama 12986 A 314 314
301 Panama 12987 T 314 314
302 Panama 12988 G 314 314
303 Panama 12989 G 314 314
304 Panama 12990 T 314 314
305 Panama 12991 A 314 314
306 Panama 12992 C 314 314
307 Panama 12993 T 314 314
308 Panama 12994 T 314 314
309 Panama 12995 G 314 314
310 Panama 12996 G 314 314
311 Panama 12997 T 314 314
312 Panama 12998 A 314 314
313 Panama 12999 G 314 314
314 Panama 13000 T 314 314
315 Panama 13001 T 314 314
316 Panama 13002 T 314 314
317 Panama 13003 A 314 314
318 Panama 13004 G 314 314
319 Panama 13005 C 314 314
320 Panama 13006 T 314 314
321 Panama 13007 G 314 314
322 Panama 13008 C 314 314
323 Panama 13009 C 314 314
324 Panama 13010 A 314 314
325 Panama 13011 C 314 314
326 Panama 13012 A 314 314
327 Panama 13013 G 314 314
328 Panama 13014 T 314 314
329 Panama 13015 A 314 314
330 Panama 13016 C 314 314
331 Panama 13017 G 314 314
332 Panama 13018 T 314 314
333 Panama 13019 C 314 314
334 Panama 13020 T 314 314
335 Panama 13021 A 314 314
336 Panama 13022 C 314 314
337 Panama 13023 A 314 314
338 Panama 13024 A 314 314