National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                     1                
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Pakistan 12686 A 56 56
1 Pakistan 12687 A 56 56
2 Pakistan 12688 T 56 56
3 Pakistan 12689 A 56 56
4 Pakistan 12690 A 56 56
5 Pakistan 12691 T 56 56
6 Pakistan 12692 G 56 56
7 Pakistan 12693 A 56 56
8 Pakistan 12694 G 56 56
9 Pakistan 12695 C 56 56
10 Pakistan 12696 T 56 56
11 Pakistan 12697 T 56 56
12 Pakistan 12698 A 56 56
13 Pakistan 12699 G 56 56
14 Pakistan 12700 T 56 56
15 Pakistan 12701 C 56 56
16 Pakistan 12702 C 56 56
17 Pakistan 12703 T 56 56
18 Pakistan 12704 G 56 56
19 Pakistan 12705 T 56 56
20 Pakistan 12706 T 56 56
21 Pakistan 12707 G 56 56
22 Pakistan 12708 C 56 56
23 Pakistan 12709 A 56 56
24 Pakistan 12710 C 56 56
25 Pakistan 12711 T 56 56
26 Pakistan 12712 A 56 56
27 Pakistan 12713 C 56 56
28 Pakistan 12714 G 56 56
29 Pakistan 12715 A 56 56
30 Pakistan 12716 C 56 56
31 Pakistan 12717 A 56 56
32 Pakistan 12718 G 56 56
33 Pakistan 12719 A 56 56
34 Pakistan 12720 T 56 56
35 Pakistan 12721 G 56 56
36 Pakistan 12722 T 56 56
37 Pakistan 12723 C 56 56
38 Pakistan 12724 T 56 56
39 Pakistan 12725 T 56 56
40 Pakistan 12726 G 56 56
41 Pakistan 12727 T 56 56
42 Pakistan 12728 G 56 56
43 Pakistan 12729 C 56 56
44 Pakistan 12730 T 56 56
45 Pakistan 12731 G 56 56
46 Pakistan 12732 C 56 56
47 Pakistan 12733 C 56 56
48 Pakistan 12734 G 56 56
49 Pakistan 12735 G 56 56
50 Pakistan 12736 T 56 56
51 Pakistan 12737 A 56 56
52 Pakistan 12738 C 56 56
53 Pakistan 12739 T 56 56
54 Pakistan 12740 A 56 56
55 Pakistan 12741 C 56 56
56 Pakistan 12742 A 56 56
57 Pakistan 12743 C 56 56
58 Pakistan 12744 A 56 56
59 Pakistan 12745 A 56 56
60 Pakistan 12746 A 56 56
61 Pakistan 12747 C 56 56
62 Pakistan 12748 T 56 56
63 Pakistan 12749 G 56 56
64 Pakistan 12750 C 56 56
65 Pakistan 12751 T 56 56
66 Pakistan 12752 T 56 56
67 Pakistan 12753 G 56 56
68 Pakistan 12754 C 56 56
69 Pakistan 12755 A 56 56
70 Pakistan 12756 C 56 56
71 Pakistan 12757 T 56 56
72 Pakistan 12758 G 56 56
73 Pakistan 12759 A 56 56
74 Pakistan 12760 T 56 56
75 Pakistan 12761 G 56 56
76 Pakistan 12762 A 56 56
77 Pakistan 12763 C 56 56
78 Pakistan 12764 A 56 56
79 Pakistan 12765 A 56 56
80 Pakistan 12766 T 56 56
81 Pakistan 12767 G 56 56
82 Pakistan 12768 C 56 56
83 Pakistan 12769 G 56 56
84 Pakistan 12770 T 56 56
85 Pakistan 12771 T 56 56
86 Pakistan 12772 A 56 56
87 Pakistan 12773 G 56 56
88 Pakistan 12774 C 56 56
89 Pakistan 12775 T 56 56
90 Pakistan 12776 T 56 56
91 Pakistan 12777 A 56 56
92 Pakistan 12778 C 56 56
93 Pakistan 12779 T 56 56
94 Pakistan 12780 A 56 56
95 Pakistan 12781 C 56 56
96 Pakistan 12782 A 56 56
97 Pakistan 12783 A 56 56
98 Pakistan 12784 C 56 56
99 Pakistan 12785 A 56 56
100 Pakistan 12786 C 56 56
101 Pakistan 12787 A 56 56
102 Pakistan 12788 A 56 56
103 Pakistan 12789 C 56 56
104 Pakistan 12790 A 56 56
105 Pakistan 12791 A 56 56
106 Pakistan 12792 A 56 56
107 Pakistan 12793 G 56 56
108 Pakistan 12794 G 56 56
109 Pakistan 12795 G 56 56
110 Pakistan 12796 A 56 56
111 Pakistan 12797 G 56 56
112 Pakistan 12798 G 56 56
113 Pakistan 12799 T 56 56
114 Pakistan 12800 A 56 56
115 Pakistan 12801 G 56 56
116 Pakistan 12802 G 56 56
117 Pakistan 12803 T 56 56
118 Pakistan 12804 T 56 56
119 Pakistan 12805 T 56 56
120 Pakistan 12806 G 56 56
121 Pakistan 12807 T 56 56
122 Pakistan 12808 A 56 56
123 Pakistan 12809 C 56 56
124 Pakistan 12810 T 56 56
125 Pakistan 12811 T 56 56
126 Pakistan 12812 G 56 56
127 Pakistan 12813 C 56 56
128 Pakistan 12814 A 56 56
129 Pakistan 12815 C 56 56
130 Pakistan 12816 T 56 56
131 Pakistan 12817 G 56 56
132 Pakistan 12818 T 56 56
133 Pakistan 12819 T 56 56
134 Pakistan 12820 A 56 56
135 Pakistan 12821 T 56 56
136 Pakistan 12822 C 56 56
137 Pakistan 12823 C 56 56
138 Pakistan 12824 G 56 56
139 Pakistan 12825 A 56 56
140 Pakistan 12826 T 57 57
141 Pakistan 12827 T 57 57
142 Pakistan 12828 T 57 57
143 Pakistan 12829 A 57 57
144 Pakistan 12830 C 57 57
145 Pakistan 12831 A 57 57
146 Pakistan 12832 G 57 57
147 Pakistan 12833 G 57 57
148 Pakistan 12834 A 57 57
149 Pakistan 12835 T 57 57
150 Pakistan 12836 T 57 57
151 Pakistan 12837 T 57 57
152 Pakistan 12838 G 57 57
153 Pakistan 12839 A 57 57
154 Pakistan 12840 A 57 57
155 Pakistan 12841 A 57 57
156 Pakistan 12842 T 57 57
157 Pakistan 12843 G 57 57
158 Pakistan 12844 G 57 57
159 Pakistan 12845 G 57 57
160 Pakistan 12846 C 57 57
161 Pakistan 12847 T 57 57
162 Pakistan 12848 A 57 57
163 Pakistan 12849 G 57 57
164 Pakistan 12850 A 57 57
165 Pakistan 12851 T 57 57
166 Pakistan 12852 T 57 57
167 Pakistan 12853 C 57 57
168 Pakistan 12854 C 57 57
169 Pakistan 12855 C 57 57
170 Pakistan 12856 T 57 57
171 Pakistan 12857 A 57 57
172 Pakistan 12858 A 57 57
173 Pakistan 12859 G 57 57
174 Pakistan 12860 A 57 57
175 Pakistan 12861 G 57 57
176 Pakistan 12862 T 57 57
177 Pakistan 12863 G 57 57
178 Pakistan 12864 A 57 57
179 Pakistan 12865 T 57 57
180 Pakistan 12866 G 57 57
181 Pakistan 12867 G 57 57
182 Pakistan 12868 A 57 57
183 Pakistan 12869 A 57 57
184 Pakistan 12870 C 57 57
185 Pakistan 12871 T 57 57
186 Pakistan 12872 G 57 57
187 Pakistan 12873 G 57 57
188 Pakistan 12874 T 57 57
189 Pakistan 12875 A 57 57
190 Pakistan 12876 C 57 57
191 Pakistan 12877 T 57 57
192 Pakistan 12878 A 57 57
193 Pakistan 12879 T 57 57
194 Pakistan 12880 C 57 57
195 Pakistan 12881 T 57 57
196 Pakistan 12882 A 57 57
197 Pakistan 12883 T 57 57
198 Pakistan 12884 A 57 57
199 Pakistan 12885 C 57 57
200 Pakistan 12886 A 57 57
201 Pakistan 12887 G 57 57
202 Pakistan 12888 A 57 57
203 Pakistan 12889 A 57 57
204 Pakistan 12890 C 57 57
205 Pakistan 12891 T 57 57
206 Pakistan 12892 G 57 57
207 Pakistan 12893 G 57 57
208 Pakistan 12894 A 57 57
209 Pakistan 12895 A 57 57
210 Pakistan 12896 C 57 57
211 Pakistan 12897 C 57 57
212 Pakistan 12898 A 57 57
213 Pakistan 12899 C 57 57
214 Pakistan 12900 C 57 57
215 Pakistan 12901 T 57 57
216 Pakistan 12902 T 57 57
217 Pakistan 12903 G 57 57
218 Pakistan 12904 T 57 57
219 Pakistan 12905 A 57 57
220 Pakistan 12906 G 57 57
221 Pakistan 12907 G 57 57
222 Pakistan 12908 T 57 57
223 Pakistan 12909 T 57 57
224 Pakistan 12910 T 57 57
225 Pakistan 12911 G 57 57
226 Pakistan 12912 T 57 57
227 Pakistan 12913 T 57 57
228 Pakistan 12914 A 57 57
229 Pakistan 12915 C 57 57
230 Pakistan 12916 A 57 57
231 Pakistan 12917 G 57 57
232 Pakistan 12918 A 57 57
233 Pakistan 12919 C 57 57
234 Pakistan 12920 A 57 57
235 Pakistan 12921 C 57 57
236 Pakistan 12922 A 57 57
237 Pakistan 12923 C 57 57
238 Pakistan 12924 C 57 57
239 Pakistan 12925 T 57 57
240 Pakistan 12926 A 57 57
241 Pakistan 12927 A 57 57
242 Pakistan 12928 A 57 57
243 Pakistan 12929 G 57 57
244 Pakistan 12930 G 57 57
245 Pakistan 12931 T 57 57
246 Pakistan 12932 C 57 57
247 Pakistan 12933 C 57 57
248 Pakistan 12934 T 57 57
249 Pakistan 12935 A 57 57
250 Pakistan 12936 A 57 57
251 Pakistan 12937 A 57 57
252 Pakistan 12938 G 57 57
253 Pakistan 12939 T 57 57
254 Pakistan 12940 G 57 57
255 Pakistan 12941 A 57 57
256 Pakistan 12942 A 57 57
257 Pakistan 12943 G 57 57
258 Pakistan 12944 T 57 57
259 Pakistan 12945 A 57 57
260 Pakistan 12946 T 57 57
261 Pakistan 12947 T 57 57
262 Pakistan 12948 T 57 57
263 Pakistan 12949 A 57 57
264 Pakistan 12950 T 57 57
265 Pakistan 12951 A 57 57
266 Pakistan 12952 C 57 57
267 Pakistan 12953 T 57 57
268 Pakistan 12954 T 57 57
269 Pakistan 12955 T 57 57
270 Pakistan 12956 A 57 57
271 Pakistan 12957 T 57 57
272 Pakistan 12958 T 57 57
273 Pakistan 12959 A 57 57
274 Pakistan 12960 A 57 57
275 Pakistan 12961 A 57 57
276 Pakistan 12962 G 57 57
277 Pakistan 12963 G 57 57
278 Pakistan 12964 A 57 57
279 Pakistan 12965 T 57 57
280 Pakistan 12966 T 57 57
281 Pakistan 12967 A 57 57
282 Pakistan 12968 A 57 57
283 Pakistan 12969 A 57 57
284 Pakistan 12970 C T 57 56 Asn4235Asn
285 Pakistan 12971 A 57 57
286 Pakistan 12972 A 57 57
287 Pakistan 12973 C 57 57
288 Pakistan 12974 C 57 57
289 Pakistan 12975 T 57 57
290 Pakistan 12976 A 57 57
291 Pakistan 12977 A 57 57
292 Pakistan 12978 A 57 57
293 Pakistan 12979 T 57 57
294 Pakistan 12980 A 57 57
295 Pakistan 12981 G 57 57
296 Pakistan 12982 A 57 57
297 Pakistan 12983 G 57 57
298 Pakistan 12984 G 57 57
299 Pakistan 12985 T 57 57
300 Pakistan 12986 A 57 57
301 Pakistan 12987 T 57 57
302 Pakistan 12988 G 57 57
303 Pakistan 12989 G 57 57
304 Pakistan 12990 T 57 56
305 Pakistan 12991 A 57 56
306 Pakistan 12992 C 57 56
307 Pakistan 12993 T 57 56
308 Pakistan 12994 T 57 56
309 Pakistan 12995 G 57 56
310 Pakistan 12996 G 57 56
311 Pakistan 12997 T 57 56
312 Pakistan 12998 A 57 56
313 Pakistan 12999 G 57 56
314 Pakistan 13000 T 57 56
315 Pakistan 13001 T 57 56
316 Pakistan 13002 T 57 56
317 Pakistan 13003 A 57 57
318 Pakistan 13004 G 57 57
319 Pakistan 13005 C 57 57
320 Pakistan 13006 T 57 57
321 Pakistan 13007 G 57 57
322 Pakistan 13008 C 57 57
323 Pakistan 13009 C 57 57
324 Pakistan 13010 A 57 57
325 Pakistan 13011 C 57 57
326 Pakistan 13012 A 57 57
327 Pakistan 13013 G 57 57
328 Pakistan 13014 T 57 57
329 Pakistan 13015 A 57 57
330 Pakistan 13016 C 57 57
331 Pakistan 13017 G 57 57
332 Pakistan 13018 T 57 57
333 Pakistan 13019 C 57 57
334 Pakistan 13020 T 57 57
335 Pakistan 13021 A 57 57
336 Pakistan 13022 C 57 57
337 Pakistan 13023 A 57 57
338 Pakistan 13024 A 57 57