National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                     1              
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45         1                            
M   6             1                        
N   21                                      
P   18                 1                    
Q   12                                      
R   18                                      
S   15                                      
T   36 1                                    
V   18                                 1    
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Oman 12686 A 396 396
1 Oman 12687 A 396 396
2 Oman 12688 T 396 396
3 Oman 12689 A 396 396
4 Oman 12690 A 396 396
5 Oman 12691 T 396 396
6 Oman 12692 G 396 396
7 Oman 12693 A 396 396
8 Oman 12694 G 396 396
9 Oman 12695 C 396 396
10 Oman 12696 T 396 396
11 Oman 12697 T 396 396
12 Oman 12698 A 396 396
13 Oman 12699 G 396 396
14 Oman 12700 T 396 396
15 Oman 12701 C 396 396
16 Oman 12702 C 396 396
17 Oman 12703 T 396 396
18 Oman 12704 G 396 396
19 Oman 12705 T 396 396
20 Oman 12706 T 396 396
21 Oman 12707 G 396 396
22 Oman 12708 C 396 396
23 Oman 12709 A 396 396
24 Oman 12710 C 396 396
25 Oman 12711 T 396 396
26 Oman 12712 A 396 396
27 Oman 12713 C 396 396
28 Oman 12714 G 396 396
29 Oman 12715 A 396 396
30 Oman 12716 C 396 396
31 Oman 12717 A 396 396
32 Oman 12718 G 396 396
33 Oman 12719 A 396 396
34 Oman 12720 T 396 396
35 Oman 12721 G 396 396
36 Oman 12722 T 396 396
37 Oman 12723 C 396 396
38 Oman 12724 T 396 396
39 Oman 12725 T 396 396
40 Oman 12726 G 396 396
41 Oman 12727 T 396 396
42 Oman 12728 G 396 396
43 Oman 12729 C 396 396
44 Oman 12730 T 396 396
45 Oman 12731 G 396 396
46 Oman 12732 C 396 396
47 Oman 12733 C 396 396
48 Oman 12734 G 396 396
49 Oman 12735 G 396 396
50 Oman 12736 T 396 396
51 Oman 12737 A 396 396
52 Oman 12738 C 396 396
53 Oman 12739 T 396 396
54 Oman 12740 A 396 396
55 Oman 12741 C 396 396
56 Oman 12742 A 396 396
57 Oman 12743 C 396 396
58 Oman 12744 A 396 396
59 Oman 12745 A 396 396
60 Oman 12746 A 396 396
61 Oman 12747 C 396 396
62 Oman 12748 T 396 396
63 Oman 12749 G 396 396
64 Oman 12750 C 396 396
65 Oman 12751 T 396 396
66 Oman 12752 T 396 396
67 Oman 12753 G 396 396
68 Oman 12754 C 396 396
69 Oman 12755 A 396 396
70 Oman 12756 C 396 396
71 Oman 12757 T 396 396
72 Oman 12758 G 396 396
73 Oman 12759 A 396 396
74 Oman 12760 T 396 396
75 Oman 12761 G 396 396
76 Oman 12762 A 396 396
77 Oman 12763 C 396 396
78 Oman 12764 A 396 396
79 Oman 12765 A 396 396
80 Oman 12766 T 396 396
81 Oman 12767 G 396 396
82 Oman 12768 C 396 396
83 Oman 12769 G A 396 395 Ala4168Ala
84 Oman 12770 T 396 396
85 Oman 12771 T 396 396
86 Oman 12772 A 396 396
87 Oman 12773 G 396 396
88 Oman 12774 C 396 396
89 Oman 12775 T 396 396
90 Oman 12776 T 396 396
91 Oman 12777 A 396 396
92 Oman 12778 C 396 396
93 Oman 12779 T 396 396
94 Oman 12780 A 396 396
95 Oman 12781 C 396 396
96 Oman 12782 A 396 396
97 Oman 12783 A 396 396
98 Oman 12784 C 396 396
99 Oman 12785 A 396 396
100 Oman 12786 C 396 396
101 Oman 12787 A 396 396
102 Oman 12788 A 396 396
103 Oman 12789 C 396 396
104 Oman 12790 A 396 396
105 Oman 12791 A 396 396
106 Oman 12792 A 396 396
107 Oman 12793 G 396 396
108 Oman 12794 G 396 396
109 Oman 12795 G 396 396
110 Oman 12796 A 396 396
111 Oman 12797 G 396 396
112 Oman 12798 G 396 396
113 Oman 12799 T 396 396
114 Oman 12800 A 396 396
115 Oman 12801 G 396 396
116 Oman 12802 G 396 396
117 Oman 12803 T 396 396
118 Oman 12804 T 396 396
119 Oman 12805 T 396 396
120 Oman 12806 G 396 396
121 Oman 12807 T 396 396
122 Oman 12808 A 396 396
123 Oman 12809 C T 396 395 Leu4182Phe
124 Oman 12810 T 396 396
125 Oman 12811 T 396 396
126 Oman 12812 G 396 396
127 Oman 12813 C 396 396
128 Oman 12814 A 396 396
129 Oman 12815 C 396 396
130 Oman 12816 T 396 396
131 Oman 12817 G 396 396
132 Oman 12818 T 396 396
133 Oman 12819 T 396 396
134 Oman 12820 A 396 396
135 Oman 12821 T 396 396
136 Oman 12822 C 396 396
137 Oman 12823 C 396 396
138 Oman 12824 G 396 396
139 Oman 12825 A 396 396
140 Oman 12826 T 396 396
141 Oman 12827 T 396 396
142 Oman 12828 T 396 396
143 Oman 12829 A 396 396
144 Oman 12830 C 396 396
145 Oman 12831 A 396 396
146 Oman 12832 G 396 396
147 Oman 12833 G 396 396
148 Oman 12834 A 396 396
149 Oman 12835 T 396 396
150 Oman 12836 T 396 396
151 Oman 12837 T 396 396
152 Oman 12838 G 396 396
153 Oman 12839 A 396 396
154 Oman 12840 A 396 396
155 Oman 12841 A 396 396
156 Oman 12842 T 396 396
157 Oman 12843 G 396 396
158 Oman 12844 G 396 396
159 Oman 12845 G 396 396
160 Oman 12846 C 396 396
161 Oman 12847 T 396 396
162 Oman 12848 A 396 396
163 Oman 12849 G 396 396
164 Oman 12850 A 396 396
165 Oman 12851 T 396 396
166 Oman 12852 T 396 396
167 Oman 12853 C 396 396
168 Oman 12854 C 396 396
169 Oman 12855 C 396 396
170 Oman 12856 T 396 396
171 Oman 12857 A 396 396
172 Oman 12858 A 396 396
173 Oman 12859 G 396 396
174 Oman 12860 A 396 396
175 Oman 12861 G 396 396
176 Oman 12862 T 396 396
177 Oman 12863 G 396 396
178 Oman 12864 A 396 396
179 Oman 12865 T 396 396
180 Oman 12866 G 396 396
181 Oman 12867 G 396 396
182 Oman 12868 A 396 396
183 Oman 12869 A 396 396
184 Oman 12870 C 396 396
185 Oman 12871 T 396 396
186 Oman 12872 G 396 396
187 Oman 12873 G 396 396
188 Oman 12874 T 396 396
189 Oman 12875 A G 396 393 Thr4204Ala
190 Oman 12876 C 396 396
191 Oman 12877 T 396 396
192 Oman 12878 A 396 396
193 Oman 12879 T 396 396
194 Oman 12880 C 396 396
195 Oman 12881 T 396 396
196 Oman 12882 A 396 396
197 Oman 12883 T 396 396
198 Oman 12884 A 396 396
199 Oman 12885 C 396 396
200 Oman 12886 A 396 396
201 Oman 12887 G 396 396
202 Oman 12888 A 396 396
203 Oman 12889 A 396 396
204 Oman 12890 C 396 396
205 Oman 12891 T 396 396
206 Oman 12892 G 396 396
207 Oman 12893 G 396 396
208 Oman 12894 A 396 396
209 Oman 12895 A 396 396
210 Oman 12896 C 396 396
211 Oman 12897 C T 396 395 Pro4211Leu
212 Oman 12898 A 396 396
213 Oman 12899 C 396 396
214 Oman 12900 C 396 396
215 Oman 12901 T 396 396
216 Oman 12902 T 396 396
217 Oman 12903 G 396 396
218 Oman 12904 T 396 396
219 Oman 12905 A 396 396
220 Oman 12906 G 396 396
221 Oman 12907 G 396 396
222 Oman 12908 T 396 396
223 Oman 12909 T 396 396
224 Oman 12910 T 396 396
225 Oman 12911 G 396 396
226 Oman 12912 T 396 396
227 Oman 12913 T 396 396
228 Oman 12914 A 396 396
229 Oman 12915 C 396 396
230 Oman 12916 A 396 396
231 Oman 12917 G 396 396
232 Oman 12918 A 396 396
233 Oman 12919 C 396 396
234 Oman 12920 A 396 396
235 Oman 12921 C 396 396
236 Oman 12922 A 396 396
237 Oman 12923 C 396 396
238 Oman 12924 C 396 396
239 Oman 12925 T 396 396
240 Oman 12926 A 396 396
241 Oman 12927 A 396 396
242 Oman 12928 A 396 396
243 Oman 12929 G 396 396
244 Oman 12930 G 396 396
245 Oman 12931 T 396 396
246 Oman 12932 C 396 396
247 Oman 12933 C 396 396
248 Oman 12934 T 396 396
249 Oman 12935 A 396 396
250 Oman 12936 A 396 396
251 Oman 12937 A 396 396
252 Oman 12938 G 396 396
253 Oman 12939 T 396 396
254 Oman 12940 G T 396 395 Val4225Val
255 Oman 12941 A 396 396
256 Oman 12942 A 396 396
257 Oman 12943 G 396 396
258 Oman 12944 T 396 396
259 Oman 12945 A 396 396
260 Oman 12946 T 396 396
261 Oman 12947 T 396 396
262 Oman 12948 T 396 396
263 Oman 12949 A 396 396
264 Oman 12950 T 396 396
265 Oman 12951 A 396 396
266 Oman 12952 C 396 396
267 Oman 12953 T 396 396
268 Oman 12954 T 396 396
269 Oman 12955 T 396 396
270 Oman 12956 A 396 396
271 Oman 12957 T 396 396
272 Oman 12958 T 396 396
273 Oman 12959 A 396 396
274 Oman 12960 A 396 396
275 Oman 12961 A 396 396
276 Oman 12962 G 396 396
277 Oman 12963 G 396 396
278 Oman 12964 A 396 396
279 Oman 12965 T 396 396
280 Oman 12966 T 396 396
281 Oman 12967 A 396 396
282 Oman 12968 A 396 396
283 Oman 12969 A 396 396
284 Oman 12970 C 396 396
285 Oman 12971 A 396 396
286 Oman 12972 A 396 396
287 Oman 12973 C 396 396
288 Oman 12974 C 396 396
289 Oman 12975 T 396 396
290 Oman 12976 A 396 396
291 Oman 12977 A 396 396
292 Oman 12978 A 396 396
293 Oman 12979 T 396 396
294 Oman 12980 A 396 396
295 Oman 12981 G 396 396
296 Oman 12982 A 396 396
297 Oman 12983 G 396 396
298 Oman 12984 G 396 396
299 Oman 12985 T 396 396
300 Oman 12986 A 396 396
301 Oman 12987 T 396 396
302 Oman 12988 G T 396 395 Met4241Ile
303 Oman 12989 G 396 396
304 Oman 12990 T 396 396
305 Oman 12991 A 396 396
306 Oman 12992 C 396 396
307 Oman 12993 T 396 396
308 Oman 12994 T 396 396
309 Oman 12995 G 396 396
310 Oman 12996 G 396 396
311 Oman 12997 T 396 396
312 Oman 12998 A 396 396
313 Oman 12999 G 396 396
314 Oman 13000 T 396 396
315 Oman 13001 T 396 396
316 Oman 13002 T 396 396
317 Oman 13003 A 396 396
318 Oman 13004 G C 396 395 Ala4247Pro
319 Oman 13005 C 396 396
320 Oman 13006 T 396 396
321 Oman 13007 G 396 396
322 Oman 13008 C 396 396
323 Oman 13009 C 396 396
324 Oman 13010 A 396 396
325 Oman 13011 C 396 396
326 Oman 13012 A 396 396
327 Oman 13013 G 396 396
328 Oman 13014 T 396 396
329 Oman 13015 A 396 396
330 Oman 13016 C 396 396
331 Oman 13017 G 396 396
332 Oman 13018 T 396 396
333 Oman 13019 C 396 396
334 Oman 13020 T 396 396
335 Oman 13021 A 396 396
336 Oman 13022 C 396 396
337 Oman 13023 A 396 396
338 Oman 13024 A 396 396