National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                             1      
C   9                                      
D   18           1         1                
E   9                                      
F   12                                      
G   27           1                          
I   6             1                        
K   21                                      
L   45         1       1                    
M   6             1                        
N   21                     1                
P   18                 1           1        
Q   12                                      
R   18                                      
S   15             1                        
T   36             3                 1      
V   18                                      
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Norway 12686 A 1277 1277
1 Norway 12687 A 1277 1277
2 Norway 12688 T 1277 1277
3 Norway 12689 A 1277 1277
4 Norway 12690 A 1277 1277
5 Norway 12691 T 1277 1277
6 Norway 12692 G 1277 1277
7 Norway 12693 A 1277 1277
8 Norway 12694 G 1277 1277
9 Norway 12695 C 1277 1277
10 Norway 12696 T 1277 1277
11 Norway 12697 T 1277 1277
12 Norway 12698 A 1277 1277
13 Norway 12699 G 1277 1277
14 Norway 12700 T 1277 1277
15 Norway 12701 C 1277 1277
16 Norway 12702 C 1277 1277
17 Norway 12703 T 1277 1277
18 Norway 12704 G 1277 1277
19 Norway 12705 T 1277 1277
20 Norway 12706 T 1277 1277
21 Norway 12707 G A 1277 1276 Ala4148Thr
22 Norway 12708 C 1277 1277
23 Norway 12709 A 1277 1277
24 Norway 12710 C 1277 1277
25 Norway 12711 T 1277 1277
26 Norway 12712 A 1277 1277
27 Norway 12713 C 1277 1277
28 Norway 12714 G 1277 1277
29 Norway 12715 A 1277 1277
30 Norway 12716 C 1277 1277
31 Norway 12717 A 1277 1277
32 Norway 12718 G 1277 1277
33 Norway 12719 A 1277 1277
34 Norway 12720 T 1277 1277
35 Norway 12721 G 1277 1277
36 Norway 12722 T 1277 1277
37 Norway 12723 C 1277 1277
38 Norway 12724 T 1277 1277
39 Norway 12725 T 1277 1277
40 Norway 12726 G 1277 1277
41 Norway 12727 T 1277 1277
42 Norway 12728 G 1277 1277
43 Norway 12729 C 1277 1277
44 Norway 12730 T 1277 1277
45 Norway 12731 G 1277 1277
46 Norway 12732 C 1277 1277
47 Norway 12733 C A 1278 1269 Ala4156Ala
48 Norway 12734 G 1278 1278
49 Norway 12735 G 1278 1278
50 Norway 12736 T 1278 1278
51 Norway 12737 A 1278 1278
52 Norway 12738 C 1278 1278
53 Norway 12739 T 1278 1278
54 Norway 12740 A 1278 1278
55 Norway 12741 C T 1278 1277 Thr4159Ile
56 Norway 12742 A 1278 1278
57 Norway 12743 C 1278 1278
58 Norway 12744 A 1278 1278
59 Norway 12745 A 1278 1278
60 Norway 12746 A 1278 1278
61 Norway 12747 C 1278 1278
62 Norway 12748 T A 1278 1277 Thr4161Thr
63 Norway 12749 G 1278 1278
64 Norway 12750 C 1278 1278
65 Norway 12751 T 1278 1278
66 Norway 12752 T 1278 1278
67 Norway 12753 G 1278 1278
68 Norway 12754 C 1278 1278
69 Norway 12755 A 1278 1278
70 Norway 12756 C 1278 1278
71 Norway 12757 T 1278 1278
72 Norway 12758 G 1278 1278
73 Norway 12759 A G 1278 1273 Asp4165Gly
74 Norway 12760 T 1278 1278
75 Norway 12761 G 1278 1278
76 Norway 12762 A 1278 1278
77 Norway 12763 C 1278 1278
78 Norway 12764 A 1278 1278
79 Norway 12765 A 1278 1278
80 Norway 12766 T 1278 1278
81 Norway 12767 G 1278 1278
82 Norway 12768 C 1278 1278
83 Norway 12769 G 1278 1278
84 Norway 12770 T 1278 1278
85 Norway 12771 T 1278 1278
86 Norway 12772 A 1278 1278
87 Norway 12773 G 1278 1278
88 Norway 12774 C 1278 1278
89 Norway 12775 T 1278 1278
90 Norway 12776 T 1278 1278
91 Norway 12777 A 1278 1278
92 Norway 12778 C 1278 1278
93 Norway 12779 T 1278 1278
94 Norway 12780 A 1277 1277
95 Norway 12781 C T 1277 1276 Tyr4172Tyr
96 Norway 12782 A 1277 1277
97 Norway 12783 A 1277 1277
98 Norway 12784 C 1277 1277
99 Norway 12785 A 1277 1277
100 Norway 12786 C 1277 1277
101 Norway 12787 A 1277 1277
102 Norway 12788 A 1277 1277
103 Norway 12789 C T 1277 1275 Thr4175Ile
104 Norway 12790 A 1277 1277
105 Norway 12791 A 1277 1277
106 Norway 12792 A 1277 1277
107 Norway 12793 G 1277 1277
108 Norway 12794 G 1277 1277
109 Norway 12795 G 1277 1277
110 Norway 12796 A 1277 1277
111 Norway 12797 G 1277 1277
112 Norway 12798 G 1277 1277
113 Norway 12799 T 1277 1277
114 Norway 12800 A 1277 1277
115 Norway 12801 G 1277 1277
116 Norway 12802 G 1277 1277
117 Norway 12803 T 1277 1277
118 Norway 12804 T 1277 1277
119 Norway 12805 T 1277 1277
120 Norway 12806 G 1277 1277
121 Norway 12807 T 1277 1277
122 Norway 12808 A 1277 1277
123 Norway 12809 C T 1277 1209 Leu4182Phe
124 Norway 12810 T 1277 1277
125 Norway 12811 T 1277 1277
126 Norway 12812 G 1277 1277
127 Norway 12813 C 1277 1277
128 Norway 12814 A 1277 1277
129 Norway 12815 C T 1277 1276 Leu4184Leu
130 Norway 12816 T 1277 1277
131 Norway 12817 G 1277 1277
132 Norway 12818 T 1277 1277
133 Norway 12819 T 1277 1277
134 Norway 12820 A 1277 1277
135 Norway 12821 T 1277 1277
136 Norway 12822 C 1277 1277
137 Norway 12823 C 1277 1277
138 Norway 12824 G A 1277 1272 Asp4187Asn
139 Norway 12825 A 1277 1277
140 Norway 12826 T 1277 1277
141 Norway 12827 T 1277 1277
142 Norway 12828 T 1277 1277
143 Norway 12829 A 1277 1277
144 Norway 12830 C 1277 1277
145 Norway 12831 A 1277 1277
146 Norway 12832 G 1277 1277
147 Norway 12833 G 1277 1277
148 Norway 12834 A 1277 1277
149 Norway 12835 T 1277 1277
150 Norway 12836 T 1277 1277
151 Norway 12837 T 1277 1277
152 Norway 12838 G 1277 1277
153 Norway 12839 A 1277 1277
154 Norway 12840 A 1277 1277
155 Norway 12841 A 1277 1277
156 Norway 12842 T 1277 1277
157 Norway 12843 G 1277 1277
158 Norway 12844 G 1277 1277
159 Norway 12845 G 1277 1277
160 Norway 12846 C 1277 1277
161 Norway 12847 T 1277 1277
162 Norway 12848 A 1277 1277
163 Norway 12849 G 1277 1277
164 Norway 12850 A 1277 1277
165 Norway 12851 T 1277 1277
166 Norway 12852 T 1277 1277
167 Norway 12853 C 1277 1277
168 Norway 12854 C T 1277 1276 Pro4197Ser
169 Norway 12855 C 1277 1277
170 Norway 12856 T 1277 1277
171 Norway 12857 A 1277 1277
172 Norway 12858 A 1277 1277
173 Norway 12859 G 1277 1277
174 Norway 12860 A 1277 1277
175 Norway 12861 G T 1277 1276 Ser4199Ile
176 Norway 12862 T 1277 1277
177 Norway 12863 G 1277 1277
178 Norway 12864 A 1277 1277
179 Norway 12865 T 1277 1277
180 Norway 12866 G 1277 1277
181 Norway 12867 G 1277 1277
182 Norway 12868 A 1277 1277
183 Norway 12869 A 1277 1277
184 Norway 12870 C 1277 1277
185 Norway 12871 T 1277 1277
186 Norway 12872 G 1277 1277
187 Norway 12873 G 1277 1277
188 Norway 12874 T 1277 1277
189 Norway 12875 A 1277 1277
190 Norway 12876 C 1277 1277
191 Norway 12877 T 1277 1277
192 Norway 12878 A 1277 1277
193 Norway 12879 T 1277 1277
194 Norway 12880 C T 1277 1273 Ile4205Ile
195 Norway 12881 T 1277 1277
196 Norway 12882 A 1277 1277
197 Norway 12883 T 1277 1277
198 Norway 12884 A 1277 1277
199 Norway 12885 C 1277 1277
200 Norway 12886 A 1277 1277
201 Norway 12887 G 1277 1277
202 Norway 12888 A 1277 1277
203 Norway 12889 A 1277 1277
204 Norway 12890 C 1277 1277
205 Norway 12891 T 1277 1277
206 Norway 12892 G 1277 1277
207 Norway 12893 G 1277 1277
208 Norway 12894 A 1277 1277
209 Norway 12895 A 1277 1277
210 Norway 12896 C 1277 1277
211 Norway 12897 C 1277 1277
212 Norway 12898 A 1277 1277
213 Norway 12899 C 1277 1277
214 Norway 12900 C 1277 1277
215 Norway 12901 T 1277 1277
216 Norway 12902 T 1277 1277
217 Norway 12903 G 1277 1277
218 Norway 12904 T 1277 1277
219 Norway 12905 A 1277 1277
220 Norway 12906 G 1277 1277
221 Norway 12907 G 1277 1277
222 Norway 12908 T 1277 1277
223 Norway 12909 T 1277 1277
224 Norway 12910 T 1277 1277
225 Norway 12911 G 1277 1277
226 Norway 12912 T 1277 1277
227 Norway 12913 T 1277 1277
228 Norway 12914 A 1277 1277
229 Norway 12915 C 1277 1277
230 Norway 12916 A 1277 1277
231 Norway 12917 G 1277 1277
232 Norway 12918 A 1277 1277
233 Norway 12919 C 1277 1277
234 Norway 12920 A 1277 1277
235 Norway 12921 C 1277 1277
236 Norway 12922 A 1277 1277
237 Norway 12923 C 1277 1277
238 Norway 12924 C T 1277 1276 Pro4220Leu
239 Norway 12925 T 1277 1277
240 Norway 12926 A 1277 1277
241 Norway 12927 A 1277 1277
242 Norway 12928 A 1277 1277
243 Norway 12929 G 1277 1277
244 Norway 12930 G 1277 1277
245 Norway 12931 T 1277 1277
246 Norway 12932 C 1277 1277
247 Norway 12933 C 1277 1277
248 Norway 12934 T 1277 1277
249 Norway 12935 A 1277 1277
250 Norway 12936 A 1277 1277
251 Norway 12937 A 1277 1277
252 Norway 12938 G 1277 1277
253 Norway 12939 T 1277 1277
254 Norway 12940 G 1277 1277
255 Norway 12941 A 1277 1277
256 Norway 12942 A 1277 1277
257 Norway 12943 G 1277 1277
258 Norway 12944 T 1277 1277
259 Norway 12945 A 1277 1277
260 Norway 12946 T 1277 1277
261 Norway 12947 T 1277 1277
262 Norway 12948 T 1277 1277
263 Norway 12949 A 1277 1277
264 Norway 12950 T 1277 1277
265 Norway 12951 A 1277 1277
266 Norway 12952 C 1277 1277
267 Norway 12953 T 1277 1277
268 Norway 12954 T 1277 1277
269 Norway 12955 T 1277 1277
270 Norway 12956 A 1277 1277
271 Norway 12957 T 1277 1277
272 Norway 12958 T 1277 1277
273 Norway 12959 A 1277 1277
274 Norway 12960 A 1277 1277
275 Norway 12961 A 1277 1277
276 Norway 12962 G 1277 1277
277 Norway 12963 G 1277 1277
278 Norway 12964 A G 1277 1274 Gly4233Gly
279 Norway 12965 T 1277 1277
280 Norway 12966 T 1277 1277
281 Norway 12967 A 1277 1277
282 Norway 12968 A 1277 1277
283 Norway 12969 A 1277 1277
284 Norway 12970 C T 1277 1274 Asn4235Asn
285 Norway 12971 A 1277 1277
286 Norway 12972 A 1277 1277
287 Norway 12973 C 1277 1277
288 Norway 12974 C 1277 1277
289 Norway 12975 T 1277 1277
290 Norway 12976 A 1277 1277
291 Norway 12977 A 1277 1277
292 Norway 12978 A 1277 1277
293 Norway 12979 T 1277 1277
294 Norway 12980 A 1277 1277
295 Norway 12981 G 1277 1277
296 Norway 12982 A 1277 1277
297 Norway 12983 G 1277 1277
298 Norway 12984 G 1277 1277
299 Norway 12985 T 1277 1277
300 Norway 12986 A 1277 1277
301 Norway 12987 T 1277 1277
302 Norway 12988 G T 1277 1202 Met4241Ile
303 Norway 12989 G 1277 1277
304 Norway 12990 T 1277 1277
305 Norway 12991 A 1277 1277
306 Norway 12992 C 1277 1277
307 Norway 12993 T 1277 1277
308 Norway 12994 T 1277 1277
309 Norway 12995 G 1277 1277
310 Norway 12996 G 1277 1277
311 Norway 12997 T 1277 1277
312 Norway 12998 A 1277 1277
313 Norway 12999 G 1277 1277
314 Norway 13000 T 1277 1277
315 Norway 13001 T 1277 1277
316 Norway 13002 T 1277 1277
317 Norway 13003 A 1277 1277
318 Norway 13004 G 1277 1277
319 Norway 13005 C 1277 1277
320 Norway 13006 T 1277 1277
321 Norway 13007 G 1277 1277
322 Norway 13008 C 1277 1277
323 Norway 13009 C 1277 1277
324 Norway 13010 A 1277 1277
325 Norway 13011 C T 1277 1276 Thr4249Ile
326 Norway 13012 A 1277 1277
327 Norway 13013 G 1277 1277
328 Norway 13014 T 1277 1277
329 Norway 13015 A 1277 1277
330 Norway 13016 C 1277 1277
331 Norway 13017 G 1277 1277
332 Norway 13018 T 1277 1277
333 Norway 13019 C 1277 1277
334 Norway 13020 T 1277 1277
335 Norway 13021 A 1277 1277
336 Norway 13022 C 1277 1277
337 Norway 13023 A 1277 1277
338 Norway 13024 A 1277 1277