National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 4                               1    
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                 1    
K   21               1                      
L   45                 2                    
M   6             1                        
N   21                     1                
P   18                                      
Q   12                                      
R   18                                      
S   15                             1        
T   36             3                 1      
V   18                                      
W   3                                      
Y   15                                     2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 New_Zealand 12686 A 1100 1100
1 New_Zealand 12687 A 1100 1100
2 New_Zealand 12688 T 1100 1100
3 New_Zealand 12689 A 1100 1100
4 New_Zealand 12690 A 1100 1100
5 New_Zealand 12691 T 1100 1100
6 New_Zealand 12692 G 1100 1100
7 New_Zealand 12693 A 1100 1100
8 New_Zealand 12694 G 1100 1100
9 New_Zealand 12695 C 1100 1100
10 New_Zealand 12696 T 1100 1100
11 New_Zealand 12697 T 1100 1100
12 New_Zealand 12698 A 1100 1100
13 New_Zealand 12699 G 1100 1100
14 New_Zealand 12700 T 1100 1100
15 New_Zealand 12701 C 1100 1100
16 New_Zealand 12702 C 1100 1100
17 New_Zealand 12703 T 1100 1100
18 New_Zealand 12704 G 1100 1100
19 New_Zealand 12705 T 1100 1100
20 New_Zealand 12706 T 1100 1100
21 New_Zealand 12707 G 1100 1100
22 New_Zealand 12708 C 1100 1100
23 New_Zealand 12709 A 1100 1100
24 New_Zealand 12710 C 1100 1100
25 New_Zealand 12711 T 1100 1100
26 New_Zealand 12712 A 1100 1100
27 New_Zealand 12713 C 1100 1100
28 New_Zealand 12714 G 1100 1100
29 New_Zealand 12715 A 1100 1100
30 New_Zealand 12716 C 1100 1100
31 New_Zealand 12717 A 1100 1100
32 New_Zealand 12718 G 1101 1101
33 New_Zealand 12719 A 1101 1101
34 New_Zealand 12720 T 1102 1102
35 New_Zealand 12721 G 1104 1104
36 New_Zealand 12722 T 1104 1104
37 New_Zealand 12723 C 1105 1105
38 New_Zealand 12724 T 1105 1105
39 New_Zealand 12725 T 1105 1105
40 New_Zealand 12726 G 1105 1105
41 New_Zealand 12727 T 1105 1105
42 New_Zealand 12728 G 1105 1105
43 New_Zealand 12729 C 1105 1105
44 New_Zealand 12730 T 1105 1105
45 New_Zealand 12731 G 1105 1105
46 New_Zealand 12732 C 1105 1105
47 New_Zealand 12733 C T,A 1111 1109 Ala4156Ala-p.Ala4156Ala
48 New_Zealand 12734 G 1111 1111
49 New_Zealand 12735 G 1111 1111
50 New_Zealand 12736 T 1111 1111
51 New_Zealand 12737 A 1111 1111
52 New_Zealand 12738 C 1111 1111
53 New_Zealand 12739 T 1111 1111
54 New_Zealand 12740 A 1111 1111
55 New_Zealand 12741 C 1111 1111
56 New_Zealand 12742 A C 1111 1110 Thr4159Thr
57 New_Zealand 12743 C 1111 1111
58 New_Zealand 12744 A 1111 1111
59 New_Zealand 12745 A 1111 1111
60 New_Zealand 12746 A 1111 1111
61 New_Zealand 12747 C 1111 1111
62 New_Zealand 12748 T 1111 1111
63 New_Zealand 12749 G 1111 1111
64 New_Zealand 12750 C 1111 1111
65 New_Zealand 12751 T 1111 1111
66 New_Zealand 12752 T 1111 1111
67 New_Zealand 12753 G 1111 1111
68 New_Zealand 12754 C 1111 1111
69 New_Zealand 12755 A 1111 1111
70 New_Zealand 12756 C 1111 1111
71 New_Zealand 12757 T 1111 1111
72 New_Zealand 12758 G 1111 1111
73 New_Zealand 12759 A 1111 1111
74 New_Zealand 12760 T 1111 1111
75 New_Zealand 12761 G 1111 1111
76 New_Zealand 12762 A 1111 1111
77 New_Zealand 12763 C 1111 1111
78 New_Zealand 12764 A 1111 1111
79 New_Zealand 12765 A 1111 1111
80 New_Zealand 12766 T 1111 1111
81 New_Zealand 12767 G 1111 1111
82 New_Zealand 12768 C 1111 1111
83 New_Zealand 12769 G 1111 1111
84 New_Zealand 12770 T 1111 1111
85 New_Zealand 12771 T 1111 1111
86 New_Zealand 12772 A 1111 1111
87 New_Zealand 12773 G 1111 1111
88 New_Zealand 12774 C 1111 1111
89 New_Zealand 12775 T 1111 1111
90 New_Zealand 12776 T 1111 1111
91 New_Zealand 12777 A 1111 1111
92 New_Zealand 12778 C 1111 1111
93 New_Zealand 12779 T 1111 1111
94 New_Zealand 12780 A 1110 1110
95 New_Zealand 12781 C T 1110 1070 Tyr4172Tyr
96 New_Zealand 12782 A 1110 1110
97 New_Zealand 12783 A 1110 1110
98 New_Zealand 12784 C T 1110 1109 Asn4173Asn
99 New_Zealand 12785 A 1109 1109
100 New_Zealand 12786 C 1109 1109
101 New_Zealand 12787 A 1109 1109
102 New_Zealand 12788 A 1109 1109
103 New_Zealand 12789 C T 1109 1108 Thr4175Ile
104 New_Zealand 12790 A 1109 1109
105 New_Zealand 12791 A 1109 1109
106 New_Zealand 12792 A 1109 1109
107 New_Zealand 12793 G A 1109 1103 Lys4176Lys
108 New_Zealand 12794 G 1109 1109
109 New_Zealand 12795 G 1109 1109
110 New_Zealand 12796 A 1109 1109
111 New_Zealand 12797 G 1109 1109
112 New_Zealand 12798 G 1109 1109
113 New_Zealand 12799 T 1109 1109
114 New_Zealand 12800 A 1109 1109
115 New_Zealand 12801 G 1109 1109
116 New_Zealand 12802 G 1109 1109
117 New_Zealand 12803 T 1109 1109
118 New_Zealand 12804 T 1109 1109
119 New_Zealand 12805 T 1109 1109
120 New_Zealand 12806 G 1109 1109
121 New_Zealand 12807 T 1109 1109
122 New_Zealand 12808 A 1109 1109
123 New_Zealand 12809 C 1109 1109
124 New_Zealand 12810 T 1109 1109
125 New_Zealand 12811 T C 1109 1107 Leu4182Leu
126 New_Zealand 12812 G 1109 1109
127 New_Zealand 12813 C 1109 1109
128 New_Zealand 12814 A 1109 1109
129 New_Zealand 12815 C 1109 1109
130 New_Zealand 12816 T 1109 1109
131 New_Zealand 12817 G 1109 1109
132 New_Zealand 12818 T 1109 1109
133 New_Zealand 12819 T 1109 1109
134 New_Zealand 12820 A 1109 1109
135 New_Zealand 12821 T 1109 1109
136 New_Zealand 12822 C 1109 1109
137 New_Zealand 12823 C T 1109 1108 Ser4186Ser
138 New_Zealand 12824 G 1109 1109
139 New_Zealand 12825 A 1109 1109
140 New_Zealand 12826 T 1109 1109
141 New_Zealand 12827 T 1109 1109
142 New_Zealand 12828 T 1109 1109
143 New_Zealand 12829 A 1109 1109
144 New_Zealand 12830 C 1109 1109
145 New_Zealand 12831 A 1109 1109
146 New_Zealand 12832 G 1109 1108
147 New_Zealand 12833 G 1109 1109
148 New_Zealand 12834 A 1109 1109
149 New_Zealand 12835 T 1109 1109
150 New_Zealand 12836 T 1109 1109
151 New_Zealand 12837 T 1109 1109
152 New_Zealand 12838 G 1109 1109
153 New_Zealand 12839 A 1109 1109
154 New_Zealand 12840 A 1109 1109
155 New_Zealand 12841 A 1109 1109
156 New_Zealand 12842 T 1109 1109
157 New_Zealand 12843 G 1109 1109
158 New_Zealand 12844 G 1109 1109
159 New_Zealand 12845 G 1109 1109
160 New_Zealand 12846 C T 1109 1108 Ala4194Val
161 New_Zealand 12847 T 1109 1109
162 New_Zealand 12848 A 1109 1109
163 New_Zealand 12849 G 1109 1109
164 New_Zealand 12850 A 1109 1109
165 New_Zealand 12851 T 1109 1109
166 New_Zealand 12852 T 1109 1109
167 New_Zealand 12853 C 1109 1109
168 New_Zealand 12854 C 1109 1109
169 New_Zealand 12855 C 1109 1109
170 New_Zealand 12856 T 1109 1109
171 New_Zealand 12857 A 1109 1109
172 New_Zealand 12858 A 1109 1109
173 New_Zealand 12859 G 1109 1109
174 New_Zealand 12860 A 1109 1109
175 New_Zealand 12861 G 1109 1109
176 New_Zealand 12862 T 1109 1109
177 New_Zealand 12863 G 1109 1109
178 New_Zealand 12864 A 1109 1109
179 New_Zealand 12865 T 1109 1109
180 New_Zealand 12866 G 1109 1109
181 New_Zealand 12867 G 1109 1109
182 New_Zealand 12868 A 1109 1109
183 New_Zealand 12869 A 1109 1107
184 New_Zealand 12870 C 1109 1109
185 New_Zealand 12871 T 1109 1109
186 New_Zealand 12872 G 1109 1109
187 New_Zealand 12873 G 1109 1109
188 New_Zealand 12874 T 1109 1109
189 New_Zealand 12875 A 1109 1109
190 New_Zealand 12876 C 1109 1109
191 New_Zealand 12877 T 1109 1109
192 New_Zealand 12878 A G 1109 1105 Ile4205Val
193 New_Zealand 12879 T 1109 1109
194 New_Zealand 12880 C 1109 1108
195 New_Zealand 12881 T 1109 1109
196 New_Zealand 12882 A 1109 1109
197 New_Zealand 12883 T C 1109 1108 Tyr4206Tyr
198 New_Zealand 12884 A 1109 1109
199 New_Zealand 12885 C T 1109 1107 Thr4207Ile
200 New_Zealand 12886 A 1109 1109
201 New_Zealand 12887 G 1109 1109
202 New_Zealand 12888 A 1109 1109
203 New_Zealand 12889 A 1109 1109
204 New_Zealand 12890 C 1109 1109
205 New_Zealand 12891 T 1109 1109
206 New_Zealand 12892 G 1109 1109
207 New_Zealand 12893 G 1109 1109
208 New_Zealand 12894 A 1109 1109
209 New_Zealand 12895 A 1109 1109
210 New_Zealand 12896 C 1109 1109
211 New_Zealand 12897 C 1109 1109
212 New_Zealand 12898 A 1109 1109
213 New_Zealand 12899 C 1109 1109
214 New_Zealand 12900 C 1109 1109
215 New_Zealand 12901 T 1109 1109
216 New_Zealand 12902 T 1109 1109
217 New_Zealand 12903 G 1109 1109
218 New_Zealand 12904 T 1109 1109
219 New_Zealand 12905 A 1109 1109
220 New_Zealand 12906 G 1109 1109
221 New_Zealand 12907 G 1109 1109
222 New_Zealand 12908 T 1109 1109
223 New_Zealand 12909 T 1109 1109
224 New_Zealand 12910 T 1109 1109
225 New_Zealand 12911 G 1109 1109
226 New_Zealand 12912 T 1109 1109
227 New_Zealand 12913 T 1109 1109
228 New_Zealand 12914 A 1109 1109
229 New_Zealand 12915 C 1109 1109
230 New_Zealand 12916 A 1109 1109
231 New_Zealand 12917 G 1109 1109
232 New_Zealand 12918 A 1109 1109
233 New_Zealand 12919 C 1109 1109
234 New_Zealand 12920 A 1109 1109
235 New_Zealand 12921 C 1109 1109
236 New_Zealand 12922 A 1109 1109
237 New_Zealand 12923 C 1109 1109
238 New_Zealand 12924 C 1109 1109
239 New_Zealand 12925 T 1109 1109
240 New_Zealand 12926 A 1109 1109
241 New_Zealand 12927 A 1109 1109
242 New_Zealand 12928 A 1109 1109
243 New_Zealand 12929 G 1109 1109
244 New_Zealand 12930 G 1109 1109
245 New_Zealand 12931 T 1109 1109
246 New_Zealand 12932 C 1109 1109
247 New_Zealand 12933 C 1109 1109
248 New_Zealand 12934 T 1109 1109
249 New_Zealand 12935 A 1109 1109
250 New_Zealand 12936 A 1109 1109
251 New_Zealand 12937 A 1109 1109
252 New_Zealand 12938 G 1109 1109
253 New_Zealand 12939 T 1109 1109
254 New_Zealand 12940 G 1109 1109
255 New_Zealand 12941 A 1109 1109
256 New_Zealand 12942 A 1109 1109
257 New_Zealand 12943 G 1109 1109
258 New_Zealand 12944 T 1109 1109
259 New_Zealand 12945 A 1109 1109
260 New_Zealand 12946 T 1109 1109
261 New_Zealand 12947 T 1109 1109
262 New_Zealand 12948 T 1109 1109
263 New_Zealand 12949 A 1109 1109
264 New_Zealand 12950 T 1109 1109
265 New_Zealand 12951 A 1109 1109
266 New_Zealand 12952 C 1109 1109
267 New_Zealand 12953 T 1109 1109
268 New_Zealand 12954 T 1109 1109
269 New_Zealand 12955 T 1109 1109
270 New_Zealand 12956 A 1109 1109
271 New_Zealand 12957 T 1109 1109
272 New_Zealand 12958 T 1109 1109
273 New_Zealand 12959 A 1109 1109
274 New_Zealand 12960 A 1109 1109
275 New_Zealand 12961 A 1109 1109
276 New_Zealand 12962 G 1109 1109
277 New_Zealand 12963 G 1109 1109
278 New_Zealand 12964 A 1109 1109
279 New_Zealand 12965 T 1109 1109
280 New_Zealand 12966 T 1109 1109
281 New_Zealand 12967 A 1109 1109
282 New_Zealand 12968 A 1109 1109
283 New_Zealand 12969 A 1109 1109
284 New_Zealand 12970 C 1109 1109
285 New_Zealand 12971 A 1109 1109
286 New_Zealand 12972 A 1109 1109
287 New_Zealand 12973 C 1109 1109
288 New_Zealand 12974 C 1109 1109
289 New_Zealand 12975 T 1109 1109
290 New_Zealand 12976 A 1109 1109
291 New_Zealand 12977 A 1109 1109
292 New_Zealand 12978 A 1109 1109
293 New_Zealand 12979 T 1109 1109
294 New_Zealand 12980 A 1109 1109
295 New_Zealand 12981 G 1109 1109
296 New_Zealand 12982 A 1109 1109
297 New_Zealand 12983 G 1109 1109
298 New_Zealand 12984 G 1109 1109
299 New_Zealand 12985 T 1109 1109
300 New_Zealand 12986 A 1109 1109
301 New_Zealand 12987 T 1109 1109
302 New_Zealand 12988 G T 1109 1108 Met4241Ile
303 New_Zealand 12989 G 1109 1109
304 New_Zealand 12990 T 1109 1109
305 New_Zealand 12991 A 1109 1109
306 New_Zealand 12992 C 1109 1109
307 New_Zealand 12993 T 1109 1109
308 New_Zealand 12994 T 1109 1109
309 New_Zealand 12995 G 1109 1109
310 New_Zealand 12996 G 1109 1109
311 New_Zealand 12997 T 1109 1109
312 New_Zealand 12998 A 1109 1109
313 New_Zealand 12999 G 1109 1109
314 New_Zealand 13000 T 1109 1109
315 New_Zealand 13001 T 1109 1109
316 New_Zealand 13002 T 1109 1109
317 New_Zealand 13003 A 1109 1109
318 New_Zealand 13004 G 1109 1109
319 New_Zealand 13005 C 1109 1109
320 New_Zealand 13006 T C 1109 1108 Ala4247Ala
321 New_Zealand 13007 G 1109 1109
322 New_Zealand 13008 C 1109 1109
323 New_Zealand 13009 C T 1109 1108 Ala4248Ala
324 New_Zealand 13010 A 1109 1109
325 New_Zealand 13011 C T 1109 1104 Thr4249Ile
326 New_Zealand 13012 A 1109 1109
327 New_Zealand 13013 G 1109 1109
328 New_Zealand 13014 T 1109 1109
329 New_Zealand 13015 A 1109 1109
330 New_Zealand 13016 C 1109 1109
331 New_Zealand 13017 G 1109 1109
332 New_Zealand 13018 T 1109 1108
333 New_Zealand 13019 C T 1109 1108 Leu4252Leu
334 New_Zealand 13020 T 1109 1109
335 New_Zealand 13021 A 1109 1109
336 New_Zealand 13022 C 1109 1109
337 New_Zealand 13023 A 1109 1109
338 New_Zealand 13024 A 1109 1109