National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Nepal 12686 A 15 15
1 Nepal 12687 A 15 15
2 Nepal 12688 T 15 15
3 Nepal 12689 A 15 15
4 Nepal 12690 A 15 15
5 Nepal 12691 T 15 15
6 Nepal 12692 G 15 15
7 Nepal 12693 A 15 15
8 Nepal 12694 G 15 15
9 Nepal 12695 C 15 15
10 Nepal 12696 T 15 15
11 Nepal 12697 T 15 15
12 Nepal 12698 A 15 15
13 Nepal 12699 G 15 15
14 Nepal 12700 T 15 15
15 Nepal 12701 C 15 15
16 Nepal 12702 C 15 15
17 Nepal 12703 T 15 15
18 Nepal 12704 G 15 15
19 Nepal 12705 T 15 15
20 Nepal 12706 T 15 15
21 Nepal 12707 G 15 15
22 Nepal 12708 C 15 15
23 Nepal 12709 A 15 15
24 Nepal 12710 C 15 15
25 Nepal 12711 T 15 15
26 Nepal 12712 A 15 15
27 Nepal 12713 C 15 15
28 Nepal 12714 G 15 15
29 Nepal 12715 A 15 15
30 Nepal 12716 C 15 15
31 Nepal 12717 A 15 15
32 Nepal 12718 G 15 15
33 Nepal 12719 A 15 15
34 Nepal 12720 T 15 15
35 Nepal 12721 G 15 15
36 Nepal 12722 T 15 15
37 Nepal 12723 C 15 15
38 Nepal 12724 T 15 15
39 Nepal 12725 T 15 15
40 Nepal 12726 G 15 15
41 Nepal 12727 T 15 15
42 Nepal 12728 G 15 15
43 Nepal 12729 C 15 15
44 Nepal 12730 T 15 15
45 Nepal 12731 G 15 15
46 Nepal 12732 C 15 15
47 Nepal 12733 C 15 15
48 Nepal 12734 G 15 15
49 Nepal 12735 G 15 15
50 Nepal 12736 T 15 15
51 Nepal 12737 A 15 15
52 Nepal 12738 C 15 15
53 Nepal 12739 T 15 15
54 Nepal 12740 A 15 15
55 Nepal 12741 C 15 15
56 Nepal 12742 A 15 15
57 Nepal 12743 C 15 15
58 Nepal 12744 A 15 15
59 Nepal 12745 A 15 15
60 Nepal 12746 A 15 15
61 Nepal 12747 C 15 15
62 Nepal 12748 T 15 15
63 Nepal 12749 G 15 15
64 Nepal 12750 C 15 15
65 Nepal 12751 T 15 15
66 Nepal 12752 T 15 15
67 Nepal 12753 G 15 15
68 Nepal 12754 C 15 15
69 Nepal 12755 A 15 15
70 Nepal 12756 C 15 15
71 Nepal 12757 T 15 15
72 Nepal 12758 G 15 15
73 Nepal 12759 A 15 15
74 Nepal 12760 T 15 15
75 Nepal 12761 G 15 15
76 Nepal 12762 A 15 15
77 Nepal 12763 C 15 15
78 Nepal 12764 A 15 15
79 Nepal 12765 A 15 15
80 Nepal 12766 T 15 15
81 Nepal 12767 G 15 15
82 Nepal 12768 C 15 15
83 Nepal 12769 G 15 15
84 Nepal 12770 T 15 15
85 Nepal 12771 T 15 15
86 Nepal 12772 A 15 15
87 Nepal 12773 G 15 15
88 Nepal 12774 C 15 15
89 Nepal 12775 T 15 15
90 Nepal 12776 T 15 15
91 Nepal 12777 A 15 15
92 Nepal 12778 C 15 15
93 Nepal 12779 T 15 15
94 Nepal 12780 A 15 15
95 Nepal 12781 C 15 15
96 Nepal 12782 A 15 15
97 Nepal 12783 A 15 15
98 Nepal 12784 C 15 15
99 Nepal 12785 A 15 15
100 Nepal 12786 C 15 15
101 Nepal 12787 A 15 15
102 Nepal 12788 A 15 15
103 Nepal 12789 C 15 15
104 Nepal 12790 A 15 15
105 Nepal 12791 A 15 15
106 Nepal 12792 A 15 15
107 Nepal 12793 G 15 15
108 Nepal 12794 G 15 15
109 Nepal 12795 G 15 15
110 Nepal 12796 A 15 15
111 Nepal 12797 G 15 15
112 Nepal 12798 G 15 15
113 Nepal 12799 T 15 15
114 Nepal 12800 A 15 15
115 Nepal 12801 G 15 15
116 Nepal 12802 G 15 15
117 Nepal 12803 T 15 15
118 Nepal 12804 T 15 15
119 Nepal 12805 T 15 15
120 Nepal 12806 G 15 15
121 Nepal 12807 T 15 15
122 Nepal 12808 A 15 15
123 Nepal 12809 C 15 15
124 Nepal 12810 T 15 15
125 Nepal 12811 T 15 15
126 Nepal 12812 G 15 15
127 Nepal 12813 C 15 15
128 Nepal 12814 A 15 15
129 Nepal 12815 C 15 15
130 Nepal 12816 T 15 15
131 Nepal 12817 G 15 15
132 Nepal 12818 T 15 15
133 Nepal 12819 T 15 15
134 Nepal 12820 A 15 15
135 Nepal 12821 T 15 15
136 Nepal 12822 C 15 15
137 Nepal 12823 C 15 15
138 Nepal 12824 G 15 15
139 Nepal 12825 A 15 15
140 Nepal 12826 T 15 15
141 Nepal 12827 T 15 15
142 Nepal 12828 T 15 15
143 Nepal 12829 A 15 15
144 Nepal 12830 C 15 15
145 Nepal 12831 A 15 15
146 Nepal 12832 G 15 15
147 Nepal 12833 G 15 15
148 Nepal 12834 A 15 15
149 Nepal 12835 T 15 15
150 Nepal 12836 T 15 15
151 Nepal 12837 T 15 15
152 Nepal 12838 G 15 15
153 Nepal 12839 A 15 15
154 Nepal 12840 A 15 15
155 Nepal 12841 A 15 15
156 Nepal 12842 T 15 15
157 Nepal 12843 G 15 15
158 Nepal 12844 G 15 15
159 Nepal 12845 G 15 15
160 Nepal 12846 C 15 15
161 Nepal 12847 T 15 15
162 Nepal 12848 A 15 15
163 Nepal 12849 G 15 15
164 Nepal 12850 A 15 15
165 Nepal 12851 T 15 15
166 Nepal 12852 T 15 15
167 Nepal 12853 C 15 15
168 Nepal 12854 C 15 15
169 Nepal 12855 C 15 15
170 Nepal 12856 T 15 15
171 Nepal 12857 A 15 15
172 Nepal 12858 A 15 15
173 Nepal 12859 G 15 15
174 Nepal 12860 A 15 15
175 Nepal 12861 G 15 15
176 Nepal 12862 T 15 15
177 Nepal 12863 G 15 15
178 Nepal 12864 A 15 15
179 Nepal 12865 T 15 15
180 Nepal 12866 G 15 15
181 Nepal 12867 G 15 15
182 Nepal 12868 A 15 15
183 Nepal 12869 A 15 15
184 Nepal 12870 C 15 15
185 Nepal 12871 T 15 15
186 Nepal 12872 G 15 15
187 Nepal 12873 G 15 15
188 Nepal 12874 T 15 15
189 Nepal 12875 A 15 15
190 Nepal 12876 C 15 15
191 Nepal 12877 T 15 15
192 Nepal 12878 A 15 15
193 Nepal 12879 T 15 15
194 Nepal 12880 C 15 15
195 Nepal 12881 T 15 15
196 Nepal 12882 A 15 15
197 Nepal 12883 T 15 15
198 Nepal 12884 A 15 15
199 Nepal 12885 C 15 15
200 Nepal 12886 A 15 15
201 Nepal 12887 G 15 15
202 Nepal 12888 A 15 15
203 Nepal 12889 A 15 15
204 Nepal 12890 C 15 15
205 Nepal 12891 T 15 15
206 Nepal 12892 G 15 15
207 Nepal 12893 G 15 15
208 Nepal 12894 A 15 15
209 Nepal 12895 A 15 15
210 Nepal 12896 C 15 15
211 Nepal 12897 C 15 15
212 Nepal 12898 A 15 15
213 Nepal 12899 C 15 15
214 Nepal 12900 C 15 15
215 Nepal 12901 T 15 15
216 Nepal 12902 T 15 15
217 Nepal 12903 G 15 15
218 Nepal 12904 T 15 15
219 Nepal 12905 A 15 15
220 Nepal 12906 G 15 15
221 Nepal 12907 G 15 15
222 Nepal 12908 T 15 15
223 Nepal 12909 T 15 15
224 Nepal 12910 T 15 15
225 Nepal 12911 G 15 15
226 Nepal 12912 T 15 15
227 Nepal 12913 T 15 15
228 Nepal 12914 A 15 15
229 Nepal 12915 C 15 15
230 Nepal 12916 A 15 15
231 Nepal 12917 G 15 15
232 Nepal 12918 A 15 15
233 Nepal 12919 C 15 15
234 Nepal 12920 A 15 15
235 Nepal 12921 C 15 15
236 Nepal 12922 A 15 15
237 Nepal 12923 C 15 15
238 Nepal 12924 C 15 15
239 Nepal 12925 T 15 15
240 Nepal 12926 A 15 15
241 Nepal 12927 A 15 15
242 Nepal 12928 A 15 15
243 Nepal 12929 G 15 15
244 Nepal 12930 G 15 15
245 Nepal 12931 T 15 15
246 Nepal 12932 C 15 15
247 Nepal 12933 C 15 15
248 Nepal 12934 T 15 15
249 Nepal 12935 A 15 15
250 Nepal 12936 A 15 15
251 Nepal 12937 A 15 15
252 Nepal 12938 G 15 15
253 Nepal 12939 T 15 15
254 Nepal 12940 G 15 15
255 Nepal 12941 A 15 15
256 Nepal 12942 A 15 15
257 Nepal 12943 G 15 15
258 Nepal 12944 T 15 15
259 Nepal 12945 A 15 15
260 Nepal 12946 T 15 15
261 Nepal 12947 T 15 15
262 Nepal 12948 T 15 15
263 Nepal 12949 A 15 15
264 Nepal 12950 T 15 15
265 Nepal 12951 A 15 15
266 Nepal 12952 C 15 15
267 Nepal 12953 T 15 15
268 Nepal 12954 T 15 15
269 Nepal 12955 T 15 15
270 Nepal 12956 A 15 15
271 Nepal 12957 T 15 15
272 Nepal 12958 T 15 15
273 Nepal 12959 A 15 15
274 Nepal 12960 A 15 15
275 Nepal 12961 A 15 15
276 Nepal 12962 G 15 15
277 Nepal 12963 G 15 15
278 Nepal 12964 A 15 15
279 Nepal 12965 T 15 15
280 Nepal 12966 T 15 15
281 Nepal 12967 A 15 15
282 Nepal 12968 A 15 15
283 Nepal 12969 A 15 15
284 Nepal 12970 C 15 15
285 Nepal 12971 A 15 15
286 Nepal 12972 A 15 15
287 Nepal 12973 C 15 15
288 Nepal 12974 C 15 15
289 Nepal 12975 T 15 15
290 Nepal 12976 A 15 15
291 Nepal 12977 A 15 15
292 Nepal 12978 A 15 15
293 Nepal 12979 T 15 15
294 Nepal 12980 A 15 15
295 Nepal 12981 G 15 15
296 Nepal 12982 A 15 15
297 Nepal 12983 G 15 15
298 Nepal 12984 G 15 15
299 Nepal 12985 T 15 15
300 Nepal 12986 A 15 15
301 Nepal 12987 T 15 15
302 Nepal 12988 G 15 15
303 Nepal 12989 G 15 15
304 Nepal 12990 T 15 15
305 Nepal 12991 A 15 15
306 Nepal 12992 C 15 15
307 Nepal 12993 T 15 15
308 Nepal 12994 T 15 15
309 Nepal 12995 G 15 15
310 Nepal 12996 G 15 15
311 Nepal 12997 T 15 15
312 Nepal 12998 A 15 15
313 Nepal 12999 G 15 15
314 Nepal 13000 T 15 15
315 Nepal 13001 T 15 15
316 Nepal 13002 T 15 15
317 Nepal 13003 A 15 15
318 Nepal 13004 G 15 15
319 Nepal 13005 C 15 15
320 Nepal 13006 T 15 15
321 Nepal 13007 G 15 15
322 Nepal 13008 C 15 15
323 Nepal 13009 C 15 15
324 Nepal 13010 A 15 15
325 Nepal 13011 C 15 15
326 Nepal 13012 A 15 15
327 Nepal 13013 G 15 15
328 Nepal 13014 T 15 15
329 Nepal 13015 A 15 15
330 Nepal 13016 C 15 15
331 Nepal 13017 G 15 15
332 Nepal 13018 T 15 15
333 Nepal 13019 C 15 15
334 Nepal 13020 T 15 15
335 Nepal 13021 A 15 15
336 Nepal 13022 C 15 15
337 Nepal 13023 A 15 15
338 Nepal 13024 A 15 15