National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Myanmar 12686 A 41 41
1 Myanmar 12687 A 41 41
2 Myanmar 12688 T 41 41
3 Myanmar 12689 A 41 41
4 Myanmar 12690 A 41 41
5 Myanmar 12691 T 41 41
6 Myanmar 12692 G 41 41
7 Myanmar 12693 A 41 41
8 Myanmar 12694 G 41 41
9 Myanmar 12695 C 41 41
10 Myanmar 12696 T 41 41
11 Myanmar 12697 T 41 41
12 Myanmar 12698 A 41 41
13 Myanmar 12699 G 41 41
14 Myanmar 12700 T 41 41
15 Myanmar 12701 C 41 41
16 Myanmar 12702 C 41 41
17 Myanmar 12703 T 41 41
18 Myanmar 12704 G 41 41
19 Myanmar 12705 T 41 41
20 Myanmar 12706 T 41 41
21 Myanmar 12707 G 41 41
22 Myanmar 12708 C 41 41
23 Myanmar 12709 A 41 41
24 Myanmar 12710 C 41 41
25 Myanmar 12711 T 41 41
26 Myanmar 12712 A 41 41
27 Myanmar 12713 C 41 41
28 Myanmar 12714 G 41 41
29 Myanmar 12715 A 41 41
30 Myanmar 12716 C 41 41
31 Myanmar 12717 A 41 41
32 Myanmar 12718 G 41 41
33 Myanmar 12719 A 41 41
34 Myanmar 12720 T 41 41
35 Myanmar 12721 G 41 41
36 Myanmar 12722 T 41 41
37 Myanmar 12723 C 41 41
38 Myanmar 12724 T 41 41
39 Myanmar 12725 T 41 41
40 Myanmar 12726 G 41 41
41 Myanmar 12727 T 41 41
42 Myanmar 12728 G 41 41
43 Myanmar 12729 C 41 41
44 Myanmar 12730 T 41 41
45 Myanmar 12731 G 41 41
46 Myanmar 12732 C 41 41
47 Myanmar 12733 C 41 41
48 Myanmar 12734 G 41 41
49 Myanmar 12735 G 41 41
50 Myanmar 12736 T 41 41
51 Myanmar 12737 A 41 41
52 Myanmar 12738 C 41 41
53 Myanmar 12739 T 41 41
54 Myanmar 12740 A 41 41
55 Myanmar 12741 C 41 41
56 Myanmar 12742 A 41 41
57 Myanmar 12743 C 41 41
58 Myanmar 12744 A 41 41
59 Myanmar 12745 A 41 41
60 Myanmar 12746 A 41 41
61 Myanmar 12747 C 41 41
62 Myanmar 12748 T 41 41
63 Myanmar 12749 G 41 41
64 Myanmar 12750 C 41 41
65 Myanmar 12751 T 41 41
66 Myanmar 12752 T 41 41
67 Myanmar 12753 G 41 41
68 Myanmar 12754 C 41 41
69 Myanmar 12755 A 41 41
70 Myanmar 12756 C 41 41
71 Myanmar 12757 T 41 41
72 Myanmar 12758 G 41 41
73 Myanmar 12759 A 41 41
74 Myanmar 12760 T 41 41
75 Myanmar 12761 G 41 41
76 Myanmar 12762 A 41 41
77 Myanmar 12763 C 41 41
78 Myanmar 12764 A 41 41
79 Myanmar 12765 A 41 41
80 Myanmar 12766 T 41 41
81 Myanmar 12767 G 41 41
82 Myanmar 12768 C 41 41
83 Myanmar 12769 G 41 41
84 Myanmar 12770 T 41 41
85 Myanmar 12771 T 41 41
86 Myanmar 12772 A 41 41
87 Myanmar 12773 G 41 41
88 Myanmar 12774 C 41 41
89 Myanmar 12775 T 41 41
90 Myanmar 12776 T 41 41
91 Myanmar 12777 A 41 41
92 Myanmar 12778 C 41 41
93 Myanmar 12779 T 41 41
94 Myanmar 12780 A 41 41
95 Myanmar 12781 C 41 41
96 Myanmar 12782 A 41 41
97 Myanmar 12783 A 41 41
98 Myanmar 12784 C 41 41
99 Myanmar 12785 A 41 41
100 Myanmar 12786 C 41 41
101 Myanmar 12787 A 41 41
102 Myanmar 12788 A 41 41
103 Myanmar 12789 C 41 41
104 Myanmar 12790 A 41 41
105 Myanmar 12791 A 41 41
106 Myanmar 12792 A 41 41
107 Myanmar 12793 G 41 41
108 Myanmar 12794 G 41 41
109 Myanmar 12795 G 41 41
110 Myanmar 12796 A 41 41
111 Myanmar 12797 G 41 41
112 Myanmar 12798 G 41 41
113 Myanmar 12799 T 41 41
114 Myanmar 12800 A 41 41
115 Myanmar 12801 G 41 41
116 Myanmar 12802 G 41 41
117 Myanmar 12803 T 41 41
118 Myanmar 12804 T 41 41
119 Myanmar 12805 T 41 41
120 Myanmar 12806 G 41 41
121 Myanmar 12807 T 41 41
122 Myanmar 12808 A 41 41
123 Myanmar 12809 C 41 41
124 Myanmar 12810 T 41 41
125 Myanmar 12811 T 41 41
126 Myanmar 12812 G 41 41
127 Myanmar 12813 C 41 41
128 Myanmar 12814 A 41 41
129 Myanmar 12815 C 41 41
130 Myanmar 12816 T 41 41
131 Myanmar 12817 G 41 41
132 Myanmar 12818 T 41 41
133 Myanmar 12819 T 41 41
134 Myanmar 12820 A 41 41
135 Myanmar 12821 T 41 41
136 Myanmar 12822 C 41 41
137 Myanmar 12823 C 41 41
138 Myanmar 12824 G 41 41
139 Myanmar 12825 A 41 41
140 Myanmar 12826 T 41 41
141 Myanmar 12827 T 41 41
142 Myanmar 12828 T 41 41
143 Myanmar 12829 A 41 41
144 Myanmar 12830 C 41 41
145 Myanmar 12831 A 41 41
146 Myanmar 12832 G 41 41
147 Myanmar 12833 G 41 41
148 Myanmar 12834 A 41 41
149 Myanmar 12835 T 41 41
150 Myanmar 12836 T 41 41
151 Myanmar 12837 T 41 41
152 Myanmar 12838 G 41 41
153 Myanmar 12839 A 41 41
154 Myanmar 12840 A 41 41
155 Myanmar 12841 A 41 41
156 Myanmar 12842 T 41 41
157 Myanmar 12843 G 41 41
158 Myanmar 12844 G 41 41
159 Myanmar 12845 G 41 41
160 Myanmar 12846 C 41 41
161 Myanmar 12847 T 41 41
162 Myanmar 12848 A 41 41
163 Myanmar 12849 G 41 41
164 Myanmar 12850 A 41 41
165 Myanmar 12851 T 41 41
166 Myanmar 12852 T 41 41
167 Myanmar 12853 C 41 41
168 Myanmar 12854 C 41 41
169 Myanmar 12855 C 41 41
170 Myanmar 12856 T 41 41
171 Myanmar 12857 A 41 41
172 Myanmar 12858 A 41 41
173 Myanmar 12859 G 41 41
174 Myanmar 12860 A 41 41
175 Myanmar 12861 G 41 41
176 Myanmar 12862 T 41 41
177 Myanmar 12863 G 41 41
178 Myanmar 12864 A 41 41
179 Myanmar 12865 T 41 41
180 Myanmar 12866 G 41 41
181 Myanmar 12867 G 41 41
182 Myanmar 12868 A 41 41
183 Myanmar 12869 A 41 41
184 Myanmar 12870 C 41 41
185 Myanmar 12871 T 41 41
186 Myanmar 12872 G 41 41
187 Myanmar 12873 G 41 41
188 Myanmar 12874 T 41 41
189 Myanmar 12875 A 41 41
190 Myanmar 12876 C 41 41
191 Myanmar 12877 T 41 41
192 Myanmar 12878 A 41 41
193 Myanmar 12879 T 41 41
194 Myanmar 12880 C 41 41
195 Myanmar 12881 T 41 41
196 Myanmar 12882 A 41 41
197 Myanmar 12883 T 41 41
198 Myanmar 12884 A 41 41
199 Myanmar 12885 C 41 41
200 Myanmar 12886 A 41 41
201 Myanmar 12887 G 41 41
202 Myanmar 12888 A 41 41
203 Myanmar 12889 A 41 41
204 Myanmar 12890 C 41 41
205 Myanmar 12891 T 41 41
206 Myanmar 12892 G 41 41
207 Myanmar 12893 G 41 41
208 Myanmar 12894 A 41 41
209 Myanmar 12895 A 41 41
210 Myanmar 12896 C 41 41
211 Myanmar 12897 C 41 41
212 Myanmar 12898 A 41 41
213 Myanmar 12899 C 41 41
214 Myanmar 12900 C 41 41
215 Myanmar 12901 T 41 41
216 Myanmar 12902 T 41 41
217 Myanmar 12903 G 41 41
218 Myanmar 12904 T 41 41
219 Myanmar 12905 A 41 41
220 Myanmar 12906 G 41 41
221 Myanmar 12907 G 41 41
222 Myanmar 12908 T 41 41
223 Myanmar 12909 T 41 41
224 Myanmar 12910 T 41 41
225 Myanmar 12911 G 41 41
226 Myanmar 12912 T 41 41
227 Myanmar 12913 T 41 41
228 Myanmar 12914 A 41 41
229 Myanmar 12915 C 41 41
230 Myanmar 12916 A 41 41
231 Myanmar 12917 G 41 41
232 Myanmar 12918 A 41 41
233 Myanmar 12919 C 41 41
234 Myanmar 12920 A 41 41
235 Myanmar 12921 C 41 41
236 Myanmar 12922 A 41 41
237 Myanmar 12923 C 41 41
238 Myanmar 12924 C 41 41
239 Myanmar 12925 T 41 41
240 Myanmar 12926 A 41 41
241 Myanmar 12927 A 41 41
242 Myanmar 12928 A 41 41
243 Myanmar 12929 G 41 41
244 Myanmar 12930 G 41 41
245 Myanmar 12931 T 41 41
246 Myanmar 12932 C 41 41
247 Myanmar 12933 C 41 41
248 Myanmar 12934 T 41 41
249 Myanmar 12935 A 41 41
250 Myanmar 12936 A 41 41
251 Myanmar 12937 A 41 41
252 Myanmar 12938 G 41 41
253 Myanmar 12939 T 41 41
254 Myanmar 12940 G 41 41
255 Myanmar 12941 A 41 41
256 Myanmar 12942 A 41 41
257 Myanmar 12943 G 41 41
258 Myanmar 12944 T 41 41
259 Myanmar 12945 A 41 41
260 Myanmar 12946 T 41 41
261 Myanmar 12947 T 41 41
262 Myanmar 12948 T 41 41
263 Myanmar 12949 A 41 41
264 Myanmar 12950 T 41 41
265 Myanmar 12951 A 41 41
266 Myanmar 12952 C 41 41
267 Myanmar 12953 T 41 41
268 Myanmar 12954 T 41 41
269 Myanmar 12955 T 41 41
270 Myanmar 12956 A 41 41
271 Myanmar 12957 T 41 41
272 Myanmar 12958 T 41 41
273 Myanmar 12959 A 41 41
274 Myanmar 12960 A 41 41
275 Myanmar 12961 A 41 41
276 Myanmar 12962 G 41 41
277 Myanmar 12963 G 41 41
278 Myanmar 12964 A 41 41
279 Myanmar 12965 T 41 41
280 Myanmar 12966 T 41 41
281 Myanmar 12967 A 41 41
282 Myanmar 12968 A 41 41
283 Myanmar 12969 A 41 41
284 Myanmar 12970 C 41 41
285 Myanmar 12971 A 41 41
286 Myanmar 12972 A 41 41
287 Myanmar 12973 C 41 41
288 Myanmar 12974 C 41 41
289 Myanmar 12975 T 41 41
290 Myanmar 12976 A 41 41
291 Myanmar 12977 A 41 41
292 Myanmar 12978 A 41 41
293 Myanmar 12979 T 41 41
294 Myanmar 12980 A 41 41
295 Myanmar 12981 G 41 41
296 Myanmar 12982 A 41 41
297 Myanmar 12983 G 41 41
298 Myanmar 12984 G 41 41
299 Myanmar 12985 T 41 41
300 Myanmar 12986 A 41 41
301 Myanmar 12987 T 41 41
302 Myanmar 12988 G 41 41
303 Myanmar 12989 G 41 41
304 Myanmar 12990 T 41 41
305 Myanmar 12991 A 41 41
306 Myanmar 12992 C 41 41
307 Myanmar 12993 T 41 41
308 Myanmar 12994 T 41 41
309 Myanmar 12995 G 41 41
310 Myanmar 12996 G 41 41
311 Myanmar 12997 T 41 41
312 Myanmar 12998 A 41 41
313 Myanmar 12999 G 41 41
314 Myanmar 13000 T 41 41
315 Myanmar 13001 T 41 41
316 Myanmar 13002 T 41 41
317 Myanmar 13003 A 41 41
318 Myanmar 13004 G 41 41
319 Myanmar 13005 C 41 41
320 Myanmar 13006 T 41 41
321 Myanmar 13007 G 41 41
322 Myanmar 13008 C 41 41
323 Myanmar 13009 C 41 41
324 Myanmar 13010 A 41 41
325 Myanmar 13011 C 41 41
326 Myanmar 13012 A 41 41
327 Myanmar 13013 G 41 41
328 Myanmar 13014 T 41 41
329 Myanmar 13015 A 41 41
330 Myanmar 13016 C 41 41
331 Myanmar 13017 G 41 41
332 Myanmar 13018 T 41 41
333 Myanmar 13019 C 41 41
334 Myanmar 13020 T 41 41
335 Myanmar 13021 A 41 41
336 Myanmar 13022 C 41 41
337 Myanmar 13023 A 41 41
338 Myanmar 13024 A 41 41