National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                 1                    
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mozambique 12686 A 94 94
1 Mozambique 12687 A 94 94
2 Mozambique 12688 T 94 94
3 Mozambique 12689 A 94 94
4 Mozambique 12690 A 94 94
5 Mozambique 12691 T 94 94
6 Mozambique 12692 G 94 94
7 Mozambique 12693 A 94 94
8 Mozambique 12694 G 94 94
9 Mozambique 12695 C 94 94
10 Mozambique 12696 T 94 94
11 Mozambique 12697 T 94 94
12 Mozambique 12698 A 94 94
13 Mozambique 12699 G 94 94
14 Mozambique 12700 T 94 94
15 Mozambique 12701 C 94 94
16 Mozambique 12702 C 94 94
17 Mozambique 12703 T 94 94
18 Mozambique 12704 G 94 94
19 Mozambique 12705 T 94 94
20 Mozambique 12706 T 94 94
21 Mozambique 12707 G 94 94
22 Mozambique 12708 C 94 94
23 Mozambique 12709 A 94 94
24 Mozambique 12710 C 94 94
25 Mozambique 12711 T 94 94
26 Mozambique 12712 A 94 94
27 Mozambique 12713 C 94 94
28 Mozambique 12714 G 94 94
29 Mozambique 12715 A 94 94
30 Mozambique 12716 C 94 94
31 Mozambique 12717 A 94 94
32 Mozambique 12718 G 94 94
33 Mozambique 12719 A 94 94
34 Mozambique 12720 T 94 94
35 Mozambique 12721 G 94 94
36 Mozambique 12722 T 94 94
37 Mozambique 12723 C 94 94
38 Mozambique 12724 T 94 94
39 Mozambique 12725 T 94 94
40 Mozambique 12726 G 94 94
41 Mozambique 12727 T 94 94
42 Mozambique 12728 G 94 94
43 Mozambique 12729 C 94 94
44 Mozambique 12730 T 94 94
45 Mozambique 12731 G 94 94
46 Mozambique 12732 C 94 94
47 Mozambique 12733 C 94 94
48 Mozambique 12734 G 94 94
49 Mozambique 12735 G 94 94
50 Mozambique 12736 T 94 94
51 Mozambique 12737 A 94 94
52 Mozambique 12738 C 94 94
53 Mozambique 12739 T 94 94
54 Mozambique 12740 A 94 94
55 Mozambique 12741 C 94 94
56 Mozambique 12742 A 94 94
57 Mozambique 12743 C 94 94
58 Mozambique 12744 A 94 94
59 Mozambique 12745 A 94 94
60 Mozambique 12746 A 94 94
61 Mozambique 12747 C 94 94
62 Mozambique 12748 T 94 94
63 Mozambique 12749 G 94 94
64 Mozambique 12750 C 94 94
65 Mozambique 12751 T 94 94
66 Mozambique 12752 T 94 94
67 Mozambique 12753 G 94 94
68 Mozambique 12754 C 94 94
69 Mozambique 12755 A 94 94
70 Mozambique 12756 C 94 94
71 Mozambique 12757 T 94 94
72 Mozambique 12758 G 94 94
73 Mozambique 12759 A 94 94
74 Mozambique 12760 T 94 94
75 Mozambique 12761 G 94 94
76 Mozambique 12762 A 94 94
77 Mozambique 12763 C 94 94
78 Mozambique 12764 A 94 94
79 Mozambique 12765 A 94 94
80 Mozambique 12766 T 94 94
81 Mozambique 12767 G 94 94
82 Mozambique 12768 C 94 94
83 Mozambique 12769 G 94 94
84 Mozambique 12770 T 94 94
85 Mozambique 12771 T 94 94
86 Mozambique 12772 A 94 94
87 Mozambique 12773 G 94 94
88 Mozambique 12774 C 94 94
89 Mozambique 12775 T 94 94
90 Mozambique 12776 T 94 94
91 Mozambique 12777 A 94 94
92 Mozambique 12778 C 94 94
93 Mozambique 12779 T 94 94
94 Mozambique 12780 A 94 94
95 Mozambique 12781 C 94 94
96 Mozambique 12782 A 94 94
97 Mozambique 12783 A 94 94
98 Mozambique 12784 C 94 94
99 Mozambique 12785 A 94 94
100 Mozambique 12786 C 94 94
101 Mozambique 12787 A 94 94
102 Mozambique 12788 A 94 94
103 Mozambique 12789 C 94 94
104 Mozambique 12790 A 94 94
105 Mozambique 12791 A 94 94
106 Mozambique 12792 A 94 94
107 Mozambique 12793 G 94 94
108 Mozambique 12794 G 94 94
109 Mozambique 12795 G 94 94
110 Mozambique 12796 A 94 94
111 Mozambique 12797 G 94 94
112 Mozambique 12798 G 94 94
113 Mozambique 12799 T 94 94
114 Mozambique 12800 A 94 94
115 Mozambique 12801 G 94 94
116 Mozambique 12802 G 94 94
117 Mozambique 12803 T 94 94
118 Mozambique 12804 T 94 94
119 Mozambique 12805 T 94 94
120 Mozambique 12806 G 94 94
121 Mozambique 12807 T 94 94
122 Mozambique 12808 A 94 94
123 Mozambique 12809 C 94 94
124 Mozambique 12810 T 94 94
125 Mozambique 12811 T 94 94
126 Mozambique 12812 G 94 94
127 Mozambique 12813 C 94 94
128 Mozambique 12814 A 94 94
129 Mozambique 12815 C 94 94
130 Mozambique 12816 T 94 94
131 Mozambique 12817 G 94 94
132 Mozambique 12818 T 94 94
133 Mozambique 12819 T 94 94
134 Mozambique 12820 A 94 94
135 Mozambique 12821 T 94 94
136 Mozambique 12822 C 94 94
137 Mozambique 12823 C 94 94
138 Mozambique 12824 G 94 94
139 Mozambique 12825 A 94 94
140 Mozambique 12826 T 94 94
141 Mozambique 12827 T 94 94
142 Mozambique 12828 T 94 94
143 Mozambique 12829 A 94 94
144 Mozambique 12830 C 94 94
145 Mozambique 12831 A 94 94
146 Mozambique 12832 G 94 94
147 Mozambique 12833 G 94 94
148 Mozambique 12834 A 94 94
149 Mozambique 12835 T 94 94
150 Mozambique 12836 T 94 94
151 Mozambique 12837 T 94 94
152 Mozambique 12838 G 94 94
153 Mozambique 12839 A 94 94
154 Mozambique 12840 A 94 94
155 Mozambique 12841 A 94 94
156 Mozambique 12842 T 94 94
157 Mozambique 12843 G 94 94
158 Mozambique 12844 G 94 94
159 Mozambique 12845 G 94 94
160 Mozambique 12846 C 94 94
161 Mozambique 12847 T 94 94
162 Mozambique 12848 A 94 94
163 Mozambique 12849 G 94 94
164 Mozambique 12850 A 94 94
165 Mozambique 12851 T 94 94
166 Mozambique 12852 T 94 94
167 Mozambique 12853 C 94 94
168 Mozambique 12854 C 94 94
169 Mozambique 12855 C 94 94
170 Mozambique 12856 T 94 94
171 Mozambique 12857 A 94 94
172 Mozambique 12858 A 94 94
173 Mozambique 12859 G 94 94
174 Mozambique 12860 A 94 94
175 Mozambique 12861 G 94 94
176 Mozambique 12862 T 94 94
177 Mozambique 12863 G 94 94
178 Mozambique 12864 A 94 94
179 Mozambique 12865 T 94 94
180 Mozambique 12866 G 94 94
181 Mozambique 12867 G 94 94
182 Mozambique 12868 A 94 94
183 Mozambique 12869 A 94 94
184 Mozambique 12870 C 94 94
185 Mozambique 12871 T 94 94
186 Mozambique 12872 G 94 94
187 Mozambique 12873 G 94 94
188 Mozambique 12874 T 94 94
189 Mozambique 12875 A 94 94
190 Mozambique 12876 C 94 94
191 Mozambique 12877 T 94 94
192 Mozambique 12878 A 94 94
193 Mozambique 12879 T 94 94
194 Mozambique 12880 C 94 94
195 Mozambique 12881 T 94 94
196 Mozambique 12882 A 94 94
197 Mozambique 12883 T 94 94
198 Mozambique 12884 A 94 94
199 Mozambique 12885 C 94 94
200 Mozambique 12886 A 94 94
201 Mozambique 12887 G 94 94
202 Mozambique 12888 A 94 94
203 Mozambique 12889 A 94 94
204 Mozambique 12890 C 94 94
205 Mozambique 12891 T 94 94
206 Mozambique 12892 G 94 94
207 Mozambique 12893 G 94 94
208 Mozambique 12894 A 94 94
209 Mozambique 12895 A 94 94
210 Mozambique 12896 C 94 94
211 Mozambique 12897 C 94 94
212 Mozambique 12898 A 94 94
213 Mozambique 12899 C 94 94
214 Mozambique 12900 C 94 94
215 Mozambique 12901 T 94 94
216 Mozambique 12902 T 94 94
217 Mozambique 12903 G 94 94
218 Mozambique 12904 T 94 94
219 Mozambique 12905 A 94 94
220 Mozambique 12906 G 94 94
221 Mozambique 12907 G 94 94
222 Mozambique 12908 T 94 94
223 Mozambique 12909 T 94 94
224 Mozambique 12910 T 94 94
225 Mozambique 12911 G 94 94
226 Mozambique 12912 T 94 94
227 Mozambique 12913 T 94 94
228 Mozambique 12914 A 94 94
229 Mozambique 12915 C 94 94
230 Mozambique 12916 A 94 94
231 Mozambique 12917 G 94 94
232 Mozambique 12918 A 94 94
233 Mozambique 12919 C 94 94
234 Mozambique 12920 A 94 94
235 Mozambique 12921 C 94 94
236 Mozambique 12922 A 94 94
237 Mozambique 12923 C 94 94
238 Mozambique 12924 C 94 94
239 Mozambique 12925 T 94 94
240 Mozambique 12926 A 94 94
241 Mozambique 12927 A 94 94
242 Mozambique 12928 A 94 94
243 Mozambique 12929 G 94 94
244 Mozambique 12930 G 94 94
245 Mozambique 12931 T 94 94
246 Mozambique 12932 C 94 94
247 Mozambique 12933 C 94 94
248 Mozambique 12934 T 94 94
249 Mozambique 12935 A 94 94
250 Mozambique 12936 A 94 94
251 Mozambique 12937 A 94 94
252 Mozambique 12938 G 94 94
253 Mozambique 12939 T 94 94
254 Mozambique 12940 G 94 94
255 Mozambique 12941 A 94 94
256 Mozambique 12942 A 94 94
257 Mozambique 12943 G 94 94
258 Mozambique 12944 T 94 94
259 Mozambique 12945 A 94 94
260 Mozambique 12946 T 94 94
261 Mozambique 12947 T 94 94
262 Mozambique 12948 T 94 94
263 Mozambique 12949 A 94 94
264 Mozambique 12950 T 94 94
265 Mozambique 12951 A 94 94
266 Mozambique 12952 C 94 94
267 Mozambique 12953 T 94 94
268 Mozambique 12954 T 94 94
269 Mozambique 12955 T 94 94
270 Mozambique 12956 A 94 94
271 Mozambique 12957 T 94 94
272 Mozambique 12958 T 94 94
273 Mozambique 12959 A 94 94
274 Mozambique 12960 A 94 94
275 Mozambique 12961 A 94 94
276 Mozambique 12962 G 94 94
277 Mozambique 12963 G 94 94
278 Mozambique 12964 A 94 94
279 Mozambique 12965 T 94 94
280 Mozambique 12966 T 94 94
281 Mozambique 12967 A 94 94
282 Mozambique 12968 A 94 94
283 Mozambique 12969 A 94 94
284 Mozambique 12970 C 94 94
285 Mozambique 12971 A 94 94
286 Mozambique 12972 A 94 94
287 Mozambique 12973 C 94 94
288 Mozambique 12974 C 94 94
289 Mozambique 12975 T 94 94
290 Mozambique 12976 A 94 94
291 Mozambique 12977 A 94 94
292 Mozambique 12978 A 94 94
293 Mozambique 12979 T 94 94
294 Mozambique 12980 A 94 94
295 Mozambique 12981 G 94 94
296 Mozambique 12982 A 94 94
297 Mozambique 12983 G 94 94
298 Mozambique 12984 G 94 94
299 Mozambique 12985 T 94 94
300 Mozambique 12986 A 94 94
301 Mozambique 12987 T 94 94
302 Mozambique 12988 G 94 94
303 Mozambique 12989 G 94 94
304 Mozambique 12990 T 94 94
305 Mozambique 12991 A 94 94
306 Mozambique 12992 C 94 94
307 Mozambique 12993 T 94 94
308 Mozambique 12994 T 94 94
309 Mozambique 12995 G 94 94
310 Mozambique 12996 G 94 94
311 Mozambique 12997 T 94 94
312 Mozambique 12998 A 94 94
313 Mozambique 12999 G 94 94
314 Mozambique 13000 T 94 94
315 Mozambique 13001 T 94 94
316 Mozambique 13002 T 94 94
317 Mozambique 13003 A 94 94
318 Mozambique 13004 G 94 94
319 Mozambique 13005 C 94 94
320 Mozambique 13006 T 94 94
321 Mozambique 13007 G 94 94
322 Mozambique 13008 C 94 94
323 Mozambique 13009 C 94 94
324 Mozambique 13010 A 94 94
325 Mozambique 13011 C 94 94
326 Mozambique 13012 A 94 94
327 Mozambique 13013 G 94 94
328 Mozambique 13014 T 94 94
329 Mozambique 13015 A 94 94
330 Mozambique 13016 C 94 94
331 Mozambique 13017 G 94 94
332 Mozambique 13018 T 94 94
333 Mozambique 13019 C T 94 92 Leu4252Leu
334 Mozambique 13020 T 94 94
335 Mozambique 13021 A 94 94
336 Mozambique 13022 C 94 94
337 Mozambique 13023 A 94 94
338 Mozambique 13024 A 94 94