National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                                    
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                 1                    
M   6             1                        
N   21                     1                
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36             1                        
V   18                   1                  
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Morocco 12686 A 121 121
1 Morocco 12687 A 121 121
2 Morocco 12688 T 121 121
3 Morocco 12689 A 121 121
4 Morocco 12690 A 121 121
5 Morocco 12691 T 121 121
6 Morocco 12692 G 121 121
7 Morocco 12693 A 121 121
8 Morocco 12694 G 121 121
9 Morocco 12695 C 121 121
10 Morocco 12696 T 121 121
11 Morocco 12697 T 121 121
12 Morocco 12698 A 121 121
13 Morocco 12699 G 121 121
14 Morocco 12700 T 121 121
15 Morocco 12701 C 121 121
16 Morocco 12702 C 121 121
17 Morocco 12703 T 121 121
18 Morocco 12704 G 121 121
19 Morocco 12705 T 121 121
20 Morocco 12706 T 121 121
21 Morocco 12707 G 121 121
22 Morocco 12708 C 121 121
23 Morocco 12709 A 121 121
24 Morocco 12710 C 121 121
25 Morocco 12711 T 121 121
26 Morocco 12712 A 121 121
27 Morocco 12713 C 121 121
28 Morocco 12714 G 121 121
29 Morocco 12715 A 121 121
30 Morocco 12716 C 122 122
31 Morocco 12717 A 122 122
32 Morocco 12718 G 122 122
33 Morocco 12719 A 122 122
34 Morocco 12720 T 122 122
35 Morocco 12721 G 122 122
36 Morocco 12722 T 122 122
37 Morocco 12723 C 122 122
38 Morocco 12724 T 122 122
39 Morocco 12725 T 122 122
40 Morocco 12726 G 122 122
41 Morocco 12727 T 122 122
42 Morocco 12728 G 122 122
43 Morocco 12729 C 122 122
44 Morocco 12730 T 122 122
45 Morocco 12731 G 122 122
46 Morocco 12732 C 122 122
47 Morocco 12733 C 122 122
48 Morocco 12734 G 122 122
49 Morocco 12735 G 122 122
50 Morocco 12736 T 122 122
51 Morocco 12737 A 122 122
52 Morocco 12738 C 122 122
53 Morocco 12739 T 122 122
54 Morocco 12740 A 122 122
55 Morocco 12741 C 122 122
56 Morocco 12742 A 122 122
57 Morocco 12743 C 122 122
58 Morocco 12744 A 122 122
59 Morocco 12745 A 122 122
60 Morocco 12746 A 122 122
61 Morocco 12747 C 122 122
62 Morocco 12748 T 122 122
63 Morocco 12749 G 122 122
64 Morocco 12750 C 122 122
65 Morocco 12751 T 122 122
66 Morocco 12752 T 122 122
67 Morocco 12753 G 122 122
68 Morocco 12754 C 122 122
69 Morocco 12755 A 122 122
70 Morocco 12756 C 122 122
71 Morocco 12757 T 122 122
72 Morocco 12758 G 122 122
73 Morocco 12759 A 122 122
74 Morocco 12760 T 122 122
75 Morocco 12761 G 122 122
76 Morocco 12762 A 122 122
77 Morocco 12763 C 122 122
78 Morocco 12764 A 122 122
79 Morocco 12765 A 122 122
80 Morocco 12766 T 122 122
81 Morocco 12767 G 122 122
82 Morocco 12768 C 122 122
83 Morocco 12769 G T 122 121 Ala4168Ala
84 Morocco 12770 T 122 122
85 Morocco 12771 T 122 122
86 Morocco 12772 A 122 122
87 Morocco 12773 G 122 122
88 Morocco 12774 C 122 122
89 Morocco 12775 T 122 122
90 Morocco 12776 T 122 122
91 Morocco 12777 A 122 122
92 Morocco 12778 C 122 122
93 Morocco 12779 T 122 122
94 Morocco 12780 A 122 122
95 Morocco 12781 C T 122 121 Tyr4172Tyr
96 Morocco 12782 A 122 122
97 Morocco 12783 A 122 122
98 Morocco 12784 C 122 122
99 Morocco 12785 A 122 122
100 Morocco 12786 C 122 122
101 Morocco 12787 A 122 122
102 Morocco 12788 A 122 122
103 Morocco 12789 C T 122 121 Thr4175Ile
104 Morocco 12790 A 122 122
105 Morocco 12791 A 122 122
106 Morocco 12792 A 122 122
107 Morocco 12793 G 122 122
108 Morocco 12794 G 122 122
109 Morocco 12795 G 122 122
110 Morocco 12796 A 122 122
111 Morocco 12797 G 122 122
112 Morocco 12798 G 122 122
113 Morocco 12799 T 122 122
114 Morocco 12800 A 122 122
115 Morocco 12801 G 122 122
116 Morocco 12802 G 122 122
117 Morocco 12803 T 120 120
118 Morocco 12804 T 120 120
119 Morocco 12805 T 120 120
120 Morocco 12806 G 120 120
121 Morocco 12807 T 120 120
122 Morocco 12808 A 120 120
123 Morocco 12809 C 120 120
124 Morocco 12810 T 120 120
125 Morocco 12811 T 120 120
126 Morocco 12812 G 120 120
127 Morocco 12813 C 120 120
128 Morocco 12814 A 120 120
129 Morocco 12815 C 120 120
130 Morocco 12816 T 120 120
131 Morocco 12817 G 120 120
132 Morocco 12818 T 120 120
133 Morocco 12819 T 120 120
134 Morocco 12820 A 120 120
135 Morocco 12821 T 120 120
136 Morocco 12822 C 120 120
137 Morocco 12823 C 120 120
138 Morocco 12824 G 120 120
139 Morocco 12825 A 120 120
140 Morocco 12826 T 120 120
141 Morocco 12827 T 120 120
142 Morocco 12828 T 120 120
143 Morocco 12829 A 120 120
144 Morocco 12830 C 120 120
145 Morocco 12831 A 120 120
146 Morocco 12832 G 120 120
147 Morocco 12833 G 120 120
148 Morocco 12834 A 120 120
149 Morocco 12835 T 120 120
150 Morocco 12836 T 120 120
151 Morocco 12837 T 120 120
152 Morocco 12838 G 120 120
153 Morocco 12839 A 120 120
154 Morocco 12840 A 120 120
155 Morocco 12841 A 120 120
156 Morocco 12842 T 120 120
157 Morocco 12843 G 120 120
158 Morocco 12844 G 120 120
159 Morocco 12845 G 120 120
160 Morocco 12846 C 120 120
161 Morocco 12847 T 120 120
162 Morocco 12848 A 120 120
163 Morocco 12849 G 120 120
164 Morocco 12850 A 119 119
165 Morocco 12851 T 119 119
166 Morocco 12852 T 119 119
167 Morocco 12853 C 119 119
168 Morocco 12854 C 119 119
169 Morocco 12855 C 119 119
170 Morocco 12856 T 119 119
171 Morocco 12857 A 119 119
172 Morocco 12858 A 119 119
173 Morocco 12859 G 119 119
174 Morocco 12860 A 119 119
175 Morocco 12861 G 119 119
176 Morocco 12862 T 119 119
177 Morocco 12863 G 119 119
178 Morocco 12864 A 119 119
179 Morocco 12865 T 119 119
180 Morocco 12866 G 119 119
181 Morocco 12867 G 119 119
182 Morocco 12868 A 119 119
183 Morocco 12869 A 119 119
184 Morocco 12870 C 119 119
185 Morocco 12871 T 119 119
186 Morocco 12872 G 119 119
187 Morocco 12873 G 119 119
188 Morocco 12874 T 119 119
189 Morocco 12875 A 119 119
190 Morocco 12876 C 119 119
191 Morocco 12877 T 119 119
192 Morocco 12878 A 119 119
193 Morocco 12879 T 119 119
194 Morocco 12880 C 119 119
195 Morocco 12881 T 119 119
196 Morocco 12882 A 119 119
197 Morocco 12883 T 119 119
198 Morocco 12884 A 119 119
199 Morocco 12885 C 119 119
200 Morocco 12886 A 119 119
201 Morocco 12887 G 119 119
202 Morocco 12888 A 119 119
203 Morocco 12889 A 119 119
204 Morocco 12890 C 119 119
205 Morocco 12891 T 119 119
206 Morocco 12892 G 119 119
207 Morocco 12893 G 119 119
208 Morocco 12894 A 119 119
209 Morocco 12895 A 119 119
210 Morocco 12896 C 119 119
211 Morocco 12897 C 119 119
212 Morocco 12898 A 119 119
213 Morocco 12899 C 119 119
214 Morocco 12900 C 119 119
215 Morocco 12901 T 119 119
216 Morocco 12902 T 119 119
217 Morocco 12903 G 119 119
218 Morocco 12904 T 119 119
219 Morocco 12905 A 119 119
220 Morocco 12906 G 119 119
221 Morocco 12907 G 119 119
222 Morocco 12908 T 119 119
223 Morocco 12909 T 119 119
224 Morocco 12910 T 119 119
225 Morocco 12911 G 119 119
226 Morocco 12912 T 119 119
227 Morocco 12913 T 119 119
228 Morocco 12914 A 119 119
229 Morocco 12915 C 119 119
230 Morocco 12916 A 119 119
231 Morocco 12917 G 119 119
232 Morocco 12918 A 119 119
233 Morocco 12919 C 119 119
234 Morocco 12920 A 119 119
235 Morocco 12921 C 119 119
236 Morocco 12922 A 119 119
237 Morocco 12923 C 119 119
238 Morocco 12924 C 119 119
239 Morocco 12925 T 119 119
240 Morocco 12926 A 119 119
241 Morocco 12927 A 119 119
242 Morocco 12928 A 119 119
243 Morocco 12929 G 119 119
244 Morocco 12930 G 119 119
245 Morocco 12931 T 119 119
246 Morocco 12932 C 119 119
247 Morocco 12933 C 119 119
248 Morocco 12934 T 119 119
249 Morocco 12935 A 119 119
250 Morocco 12936 A 119 119
251 Morocco 12937 A 119 119
252 Morocco 12938 G A 119 118 Val4225Met
253 Morocco 12939 T 119 119
254 Morocco 12940 G 119 119
255 Morocco 12941 A 119 119
256 Morocco 12942 A 119 119
257 Morocco 12943 G 119 119
258 Morocco 12944 T 119 119
259 Morocco 12945 A 119 119
260 Morocco 12946 T 119 119
261 Morocco 12947 T 119 119
262 Morocco 12948 T 119 119
263 Morocco 12949 A 119 119
264 Morocco 12950 T 119 119
265 Morocco 12951 A 119 119
266 Morocco 12952 C 119 119
267 Morocco 12953 T 119 119
268 Morocco 12954 T 119 119
269 Morocco 12955 T 119 119
270 Morocco 12956 A 119 119
271 Morocco 12957 T 119 119
272 Morocco 12958 T 119 119
273 Morocco 12959 A 119 119
274 Morocco 12960 A 119 119
275 Morocco 12961 A 119 119
276 Morocco 12962 G 119 119
277 Morocco 12963 G 119 119
278 Morocco 12964 A 119 119
279 Morocco 12965 T 119 119
280 Morocco 12966 T 119 119
281 Morocco 12967 A 119 119
282 Morocco 12968 A 119 119
283 Morocco 12969 A 119 119
284 Morocco 12970 C T 119 118 Asn4235Asn
285 Morocco 12971 A 119 119
286 Morocco 12972 A 119 119
287 Morocco 12973 C 119 119
288 Morocco 12974 C 119 119
289 Morocco 12975 T 119 119
290 Morocco 12976 A 119 119
291 Morocco 12977 A 119 119
292 Morocco 12978 A 119 119
293 Morocco 12979 T 119 119
294 Morocco 12980 A 119 119
295 Morocco 12981 G 119 119
296 Morocco 12982 A 119 119
297 Morocco 12983 G 119 119
298 Morocco 12984 G 119 119
299 Morocco 12985 T 119 119
300 Morocco 12986 A 119 119
301 Morocco 12987 T 119 119
302 Morocco 12988 G T 119 118 Met4241Ile
303 Morocco 12989 G 119 119
304 Morocco 12990 T 119 119
305 Morocco 12991 A 119 119
306 Morocco 12992 C 119 119
307 Morocco 12993 T 119 119
308 Morocco 12994 T 119 119
309 Morocco 12995 G 119 119
310 Morocco 12996 G 119 119
311 Morocco 12997 T 119 119
312 Morocco 12998 A 119 119
313 Morocco 12999 G 119 119
314 Morocco 13000 T 119 119
315 Morocco 13001 T 119 119
316 Morocco 13002 T 119 119
317 Morocco 13003 A 119 119
318 Morocco 13004 G 119 119
319 Morocco 13005 C 119 119
320 Morocco 13006 T 119 119
321 Morocco 13007 G 119 119
322 Morocco 13008 C 119 119
323 Morocco 13009 C 119 119
324 Morocco 13010 A 119 119
325 Morocco 13011 C 119 119
326 Morocco 13012 A 119 119
327 Morocco 13013 G 119 119
328 Morocco 13014 T 119 119
329 Morocco 13015 A 119 119
330 Morocco 13016 C 119 119
331 Morocco 13017 G 119 119
332 Morocco 13018 T 119 119
333 Morocco 13019 C T 119 106 Leu4252Leu
334 Morocco 13020 T 119 119
335 Morocco 13021 A 119 119
336 Morocco 13022 C 119 119
337 Morocco 13023 A 119 119
338 Morocco 13024 A 119 119