National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Montenegro 12686 A 12 12
1 Montenegro 12687 A 12 12
2 Montenegro 12688 T 12 12
3 Montenegro 12689 A 12 12
4 Montenegro 12690 A 12 12
5 Montenegro 12691 T 12 12
6 Montenegro 12692 G 12 12
7 Montenegro 12693 A 12 12
8 Montenegro 12694 G 12 12
9 Montenegro 12695 C 12 12
10 Montenegro 12696 T 12 12
11 Montenegro 12697 T 12 12
12 Montenegro 12698 A 12 12
13 Montenegro 12699 G 12 12
14 Montenegro 12700 T 12 12
15 Montenegro 12701 C 12 12
16 Montenegro 12702 C 12 12
17 Montenegro 12703 T 12 12
18 Montenegro 12704 G 12 12
19 Montenegro 12705 T 12 12
20 Montenegro 12706 T 12 12
21 Montenegro 12707 G 12 12
22 Montenegro 12708 C 12 12
23 Montenegro 12709 A 12 12
24 Montenegro 12710 C 12 12
25 Montenegro 12711 T 12 12
26 Montenegro 12712 A 12 12
27 Montenegro 12713 C 12 12
28 Montenegro 12714 G 12 12
29 Montenegro 12715 A 12 12
30 Montenegro 12716 C 12 12
31 Montenegro 12717 A 12 12
32 Montenegro 12718 G 12 12
33 Montenegro 12719 A 12 12
34 Montenegro 12720 T 12 12
35 Montenegro 12721 G 12 12
36 Montenegro 12722 T 12 12
37 Montenegro 12723 C 12 12
38 Montenegro 12724 T 12 12
39 Montenegro 12725 T 12 12
40 Montenegro 12726 G 12 12
41 Montenegro 12727 T 12 12
42 Montenegro 12728 G 12 12
43 Montenegro 12729 C 12 12
44 Montenegro 12730 T 12 12
45 Montenegro 12731 G 12 12
46 Montenegro 12732 C 12 12
47 Montenegro 12733 C 12 12
48 Montenegro 12734 G 12 12
49 Montenegro 12735 G 12 12
50 Montenegro 12736 T 12 12
51 Montenegro 12737 A 12 12
52 Montenegro 12738 C 12 12
53 Montenegro 12739 T 12 12
54 Montenegro 12740 A 12 12
55 Montenegro 12741 C 12 12
56 Montenegro 12742 A 12 12
57 Montenegro 12743 C 12 12
58 Montenegro 12744 A 12 12
59 Montenegro 12745 A 12 12
60 Montenegro 12746 A 12 12
61 Montenegro 12747 C 12 12
62 Montenegro 12748 T 12 12
63 Montenegro 12749 G 12 12
64 Montenegro 12750 C 12 12
65 Montenegro 12751 T 12 12
66 Montenegro 12752 T 12 12
67 Montenegro 12753 G 12 12
68 Montenegro 12754 C 12 12
69 Montenegro 12755 A 12 12
70 Montenegro 12756 C 12 12
71 Montenegro 12757 T 12 12
72 Montenegro 12758 G 12 12
73 Montenegro 12759 A 12 12
74 Montenegro 12760 T 12 12
75 Montenegro 12761 G 12 12
76 Montenegro 12762 A 12 12
77 Montenegro 12763 C 12 12
78 Montenegro 12764 A 12 12
79 Montenegro 12765 A 12 12
80 Montenegro 12766 T 12 12
81 Montenegro 12767 G 12 12
82 Montenegro 12768 C 12 12
83 Montenegro 12769 G 12 12
84 Montenegro 12770 T 12 12
85 Montenegro 12771 T 12 12
86 Montenegro 12772 A 12 12
87 Montenegro 12773 G 12 12
88 Montenegro 12774 C 12 12
89 Montenegro 12775 T 12 12
90 Montenegro 12776 T 12 12
91 Montenegro 12777 A 12 12
92 Montenegro 12778 C 12 12
93 Montenegro 12779 T 12 12
94 Montenegro 12780 A 12 12
95 Montenegro 12781 C 12 12
96 Montenegro 12782 A 12 12
97 Montenegro 12783 A 12 12
98 Montenegro 12784 C 12 12
99 Montenegro 12785 A 12 12
100 Montenegro 12786 C 12 12
101 Montenegro 12787 A 12 12
102 Montenegro 12788 A 12 12
103 Montenegro 12789 C 12 12
104 Montenegro 12790 A 12 12
105 Montenegro 12791 A 12 12
106 Montenegro 12792 A 12 12
107 Montenegro 12793 G 12 12
108 Montenegro 12794 G 12 12
109 Montenegro 12795 G 12 12
110 Montenegro 12796 A 12 12
111 Montenegro 12797 G 12 12
112 Montenegro 12798 G 12 12
113 Montenegro 12799 T 12 12
114 Montenegro 12800 A 12 12
115 Montenegro 12801 G 12 12
116 Montenegro 12802 G 12 12
117 Montenegro 12803 T 12 12
118 Montenegro 12804 T 12 12
119 Montenegro 12805 T 12 12
120 Montenegro 12806 G 12 12
121 Montenegro 12807 T 12 12
122 Montenegro 12808 A 12 12
123 Montenegro 12809 C 12 12
124 Montenegro 12810 T 12 12
125 Montenegro 12811 T 12 12
126 Montenegro 12812 G 12 12
127 Montenegro 12813 C 12 12
128 Montenegro 12814 A 12 12
129 Montenegro 12815 C 12 12
130 Montenegro 12816 T 12 12
131 Montenegro 12817 G 12 12
132 Montenegro 12818 T 12 12
133 Montenegro 12819 T 12 12
134 Montenegro 12820 A 12 12
135 Montenegro 12821 T 12 12
136 Montenegro 12822 C 12 12
137 Montenegro 12823 C 12 12
138 Montenegro 12824 G 12 12
139 Montenegro 12825 A 12 12
140 Montenegro 12826 T 12 12
141 Montenegro 12827 T 12 12
142 Montenegro 12828 T 12 12
143 Montenegro 12829 A 12 12
144 Montenegro 12830 C 12 12
145 Montenegro 12831 A 12 12
146 Montenegro 12832 G 12 12
147 Montenegro 12833 G 12 12
148 Montenegro 12834 A 12 12
149 Montenegro 12835 T 12 12
150 Montenegro 12836 T 12 12
151 Montenegro 12837 T 12 12
152 Montenegro 12838 G 12 12
153 Montenegro 12839 A 12 12
154 Montenegro 12840 A 12 12
155 Montenegro 12841 A 12 12
156 Montenegro 12842 T 12 12
157 Montenegro 12843 G 12 12
158 Montenegro 12844 G 12 12
159 Montenegro 12845 G 12 12
160 Montenegro 12846 C 12 12
161 Montenegro 12847 T 12 12
162 Montenegro 12848 A 12 12
163 Montenegro 12849 G 12 12
164 Montenegro 12850 A 12 12
165 Montenegro 12851 T 12 12
166 Montenegro 12852 T 12 12
167 Montenegro 12853 C 12 12
168 Montenegro 12854 C 12 12
169 Montenegro 12855 C 12 12
170 Montenegro 12856 T 12 12
171 Montenegro 12857 A 12 12
172 Montenegro 12858 A 12 12
173 Montenegro 12859 G 12 12
174 Montenegro 12860 A 12 12
175 Montenegro 12861 G 12 12
176 Montenegro 12862 T 12 12
177 Montenegro 12863 G 12 12
178 Montenegro 12864 A 12 12
179 Montenegro 12865 T 12 12
180 Montenegro 12866 G 12 12
181 Montenegro 12867 G 12 12
182 Montenegro 12868 A 12 12
183 Montenegro 12869 A 12 12
184 Montenegro 12870 C 12 12
185 Montenegro 12871 T 12 12
186 Montenegro 12872 G 12 12
187 Montenegro 12873 G 12 12
188 Montenegro 12874 T 12 12
189 Montenegro 12875 A 12 12
190 Montenegro 12876 C 12 12
191 Montenegro 12877 T 12 12
192 Montenegro 12878 A 12 12
193 Montenegro 12879 T 12 12
194 Montenegro 12880 C 12 12
195 Montenegro 12881 T 12 12
196 Montenegro 12882 A 12 12
197 Montenegro 12883 T 12 12
198 Montenegro 12884 A 12 12
199 Montenegro 12885 C 12 12
200 Montenegro 12886 A 12 12
201 Montenegro 12887 G 12 12
202 Montenegro 12888 A 12 12
203 Montenegro 12889 A 12 12
204 Montenegro 12890 C 12 12
205 Montenegro 12891 T 12 12
206 Montenegro 12892 G 12 12
207 Montenegro 12893 G 12 12
208 Montenegro 12894 A 12 12
209 Montenegro 12895 A 12 12
210 Montenegro 12896 C 12 12
211 Montenegro 12897 C 12 12
212 Montenegro 12898 A 12 12
213 Montenegro 12899 C 12 12
214 Montenegro 12900 C 12 12
215 Montenegro 12901 T 12 12
216 Montenegro 12902 T 12 12
217 Montenegro 12903 G 12 12
218 Montenegro 12904 T 12 12
219 Montenegro 12905 A 12 12
220 Montenegro 12906 G 12 12
221 Montenegro 12907 G 12 12
222 Montenegro 12908 T 12 12
223 Montenegro 12909 T 12 12
224 Montenegro 12910 T 12 12
225 Montenegro 12911 G 12 12
226 Montenegro 12912 T 12 12
227 Montenegro 12913 T 12 12
228 Montenegro 12914 A 12 12
229 Montenegro 12915 C 12 12
230 Montenegro 12916 A 12 12
231 Montenegro 12917 G 12 12
232 Montenegro 12918 A 12 12
233 Montenegro 12919 C 12 12
234 Montenegro 12920 A 12 12
235 Montenegro 12921 C 12 12
236 Montenegro 12922 A 12 12
237 Montenegro 12923 C 12 12
238 Montenegro 12924 C 12 12
239 Montenegro 12925 T 12 12
240 Montenegro 12926 A 12 12
241 Montenegro 12927 A 12 12
242 Montenegro 12928 A 12 12
243 Montenegro 12929 G 12 12
244 Montenegro 12930 G 12 12
245 Montenegro 12931 T 12 12
246 Montenegro 12932 C 12 12
247 Montenegro 12933 C 12 12
248 Montenegro 12934 T 12 12
249 Montenegro 12935 A 12 12
250 Montenegro 12936 A 12 12
251 Montenegro 12937 A 12 12
252 Montenegro 12938 G 12 12
253 Montenegro 12939 T 12 12
254 Montenegro 12940 G 12 12
255 Montenegro 12941 A 12 12
256 Montenegro 12942 A 12 12
257 Montenegro 12943 G 12 12
258 Montenegro 12944 T 12 12
259 Montenegro 12945 A 12 12
260 Montenegro 12946 T 12 12
261 Montenegro 12947 T 12 12
262 Montenegro 12948 T 12 12
263 Montenegro 12949 A 12 12
264 Montenegro 12950 T 12 12
265 Montenegro 12951 A 12 12
266 Montenegro 12952 C 12 12
267 Montenegro 12953 T 12 12
268 Montenegro 12954 T 12 12
269 Montenegro 12955 T 12 12
270 Montenegro 12956 A 12 12
271 Montenegro 12957 T 12 12
272 Montenegro 12958 T 12 12
273 Montenegro 12959 A 12 12
274 Montenegro 12960 A 12 12
275 Montenegro 12961 A 12 12
276 Montenegro 12962 G 12 12
277 Montenegro 12963 G 12 12
278 Montenegro 12964 A 12 12
279 Montenegro 12965 T 12 12
280 Montenegro 12966 T 12 12
281 Montenegro 12967 A 12 12
282 Montenegro 12968 A 12 12
283 Montenegro 12969 A 12 12
284 Montenegro 12970 C 12 12
285 Montenegro 12971 A 12 12
286 Montenegro 12972 A 12 12
287 Montenegro 12973 C 12 12
288 Montenegro 12974 C 12 12
289 Montenegro 12975 T 12 12
290 Montenegro 12976 A 12 12
291 Montenegro 12977 A 12 12
292 Montenegro 12978 A 12 12
293 Montenegro 12979 T 12 12
294 Montenegro 12980 A 12 12
295 Montenegro 12981 G 12 12
296 Montenegro 12982 A 12 12
297 Montenegro 12983 G 12 12
298 Montenegro 12984 G 12 12
299 Montenegro 12985 T 12 12
300 Montenegro 12986 A 12 12
301 Montenegro 12987 T 12 12
302 Montenegro 12988 G 12 12
303 Montenegro 12989 G 12 12
304 Montenegro 12990 T 12 12
305 Montenegro 12991 A 12 12
306 Montenegro 12992 C 12 12
307 Montenegro 12993 T 12 12
308 Montenegro 12994 T 12 12
309 Montenegro 12995 G 12 12
310 Montenegro 12996 G 12 12
311 Montenegro 12997 T 12 12
312 Montenegro 12998 A 12 12
313 Montenegro 12999 G 12 12
314 Montenegro 13000 T 12 12
315 Montenegro 13001 T 12 12
316 Montenegro 13002 T 12 12
317 Montenegro 13003 A 12 12
318 Montenegro 13004 G 12 12
319 Montenegro 13005 C 12 12
320 Montenegro 13006 T 12 12
321 Montenegro 13007 G 12 12
322 Montenegro 13008 C 12 12
323 Montenegro 13009 C 12 12
324 Montenegro 13010 A 12 12
325 Montenegro 13011 C 12 12
326 Montenegro 13012 A 12 12
327 Montenegro 13013 G 12 12
328 Montenegro 13014 T 12 12
329 Montenegro 13015 A 12 12
330 Montenegro 13016 C 12 12
331 Montenegro 13017 G 12 12
332 Montenegro 13018 T 12 12
333 Montenegro 13019 C 12 12
334 Montenegro 13020 T 12 12
335 Montenegro 13021 A 12 12
336 Montenegro 13022 C 12 12
337 Montenegro 13023 A 12 12
338 Montenegro 13024 A 12 12