National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mongolia 12686 A 7 7
1 Mongolia 12687 A 7 7
2 Mongolia 12688 T 7 7
3 Mongolia 12689 A 7 7
4 Mongolia 12690 A 7 7
5 Mongolia 12691 T 7 7
6 Mongolia 12692 G 7 7
7 Mongolia 12693 A 7 7
8 Mongolia 12694 G 7 7
9 Mongolia 12695 C 7 7
10 Mongolia 12696 T 7 7
11 Mongolia 12697 T 7 7
12 Mongolia 12698 A 7 7
13 Mongolia 12699 G 7 7
14 Mongolia 12700 T 7 7
15 Mongolia 12701 C 7 7
16 Mongolia 12702 C 7 7
17 Mongolia 12703 T 7 7
18 Mongolia 12704 G 7 7
19 Mongolia 12705 T 7 7
20 Mongolia 12706 T 7 7
21 Mongolia 12707 G 7 7
22 Mongolia 12708 C 7 7
23 Mongolia 12709 A 7 7
24 Mongolia 12710 C 7 7
25 Mongolia 12711 T 7 7
26 Mongolia 12712 A 7 7
27 Mongolia 12713 C 7 7
28 Mongolia 12714 G 7 7
29 Mongolia 12715 A 7 7
30 Mongolia 12716 C 7 7
31 Mongolia 12717 A 7 7
32 Mongolia 12718 G 7 7
33 Mongolia 12719 A 7 7
34 Mongolia 12720 T 7 7
35 Mongolia 12721 G 7 7
36 Mongolia 12722 T 7 7
37 Mongolia 12723 C 7 7
38 Mongolia 12724 T 7 7
39 Mongolia 12725 T 7 7
40 Mongolia 12726 G 7 7
41 Mongolia 12727 T 7 7
42 Mongolia 12728 G 7 7
43 Mongolia 12729 C 7 7
44 Mongolia 12730 T 7 7
45 Mongolia 12731 G 7 7
46 Mongolia 12732 C 7 7
47 Mongolia 12733 C 7 7
48 Mongolia 12734 G 7 7
49 Mongolia 12735 G 7 7
50 Mongolia 12736 T 7 7
51 Mongolia 12737 A 7 7
52 Mongolia 12738 C 7 7
53 Mongolia 12739 T 7 7
54 Mongolia 12740 A 7 7
55 Mongolia 12741 C 7 7
56 Mongolia 12742 A 7 7
57 Mongolia 12743 C 7 7
58 Mongolia 12744 A 7 7
59 Mongolia 12745 A 7 7
60 Mongolia 12746 A 7 7
61 Mongolia 12747 C 7 7
62 Mongolia 12748 T 7 7
63 Mongolia 12749 G 7 7
64 Mongolia 12750 C 7 7
65 Mongolia 12751 T 7 7
66 Mongolia 12752 T 7 7
67 Mongolia 12753 G 7 7
68 Mongolia 12754 C 7 7
69 Mongolia 12755 A 7 7
70 Mongolia 12756 C 7 7
71 Mongolia 12757 T 7 7
72 Mongolia 12758 G 7 7
73 Mongolia 12759 A 7 7
74 Mongolia 12760 T 7 7
75 Mongolia 12761 G 7 7
76 Mongolia 12762 A 7 7
77 Mongolia 12763 C 7 7
78 Mongolia 12764 A 7 7
79 Mongolia 12765 A 7 7
80 Mongolia 12766 T 7 7
81 Mongolia 12767 G 7 7
82 Mongolia 12768 C 7 7
83 Mongolia 12769 G 7 7
84 Mongolia 12770 T 7 7
85 Mongolia 12771 T 7 7
86 Mongolia 12772 A 7 7
87 Mongolia 12773 G 7 7
88 Mongolia 12774 C 7 7
89 Mongolia 12775 T 7 7
90 Mongolia 12776 T 7 7
91 Mongolia 12777 A 7 7
92 Mongolia 12778 C 7 7
93 Mongolia 12779 T 7 7
94 Mongolia 12780 A 7 7
95 Mongolia 12781 C 7 7
96 Mongolia 12782 A 7 7
97 Mongolia 12783 A 7 7
98 Mongolia 12784 C 7 7
99 Mongolia 12785 A 7 7
100 Mongolia 12786 C 7 7
101 Mongolia 12787 A 7 7
102 Mongolia 12788 A 7 7
103 Mongolia 12789 C 7 7
104 Mongolia 12790 A 7 7
105 Mongolia 12791 A 7 7
106 Mongolia 12792 A 7 7
107 Mongolia 12793 G 7 7
108 Mongolia 12794 G 7 7
109 Mongolia 12795 G 7 7
110 Mongolia 12796 A 7 7
111 Mongolia 12797 G 7 7
112 Mongolia 12798 G 7 7
113 Mongolia 12799 T 7 7
114 Mongolia 12800 A 7 7
115 Mongolia 12801 G 7 7
116 Mongolia 12802 G 7 7
117 Mongolia 12803 T 7 7
118 Mongolia 12804 T 7 7
119 Mongolia 12805 T 7 7
120 Mongolia 12806 G 7 7
121 Mongolia 12807 T 7 7
122 Mongolia 12808 A 7 7
123 Mongolia 12809 C 7 7
124 Mongolia 12810 T 7 7
125 Mongolia 12811 T 7 7
126 Mongolia 12812 G 7 7
127 Mongolia 12813 C 7 7
128 Mongolia 12814 A 7 7
129 Mongolia 12815 C 7 7
130 Mongolia 12816 T 7 7
131 Mongolia 12817 G 7 7
132 Mongolia 12818 T 7 7
133 Mongolia 12819 T 7 7
134 Mongolia 12820 A 7 7
135 Mongolia 12821 T 7 7
136 Mongolia 12822 C 7 7
137 Mongolia 12823 C 7 7
138 Mongolia 12824 G 7 7
139 Mongolia 12825 A 7 7
140 Mongolia 12826 T 7 7
141 Mongolia 12827 T 7 7
142 Mongolia 12828 T 7 7
143 Mongolia 12829 A 7 7
144 Mongolia 12830 C 7 7
145 Mongolia 12831 A 7 7
146 Mongolia 12832 G 7 7
147 Mongolia 12833 G 7 7
148 Mongolia 12834 A 7 7
149 Mongolia 12835 T 7 7
150 Mongolia 12836 T 7 7
151 Mongolia 12837 T 7 7
152 Mongolia 12838 G 7 7
153 Mongolia 12839 A 7 7
154 Mongolia 12840 A 7 7
155 Mongolia 12841 A 7 7
156 Mongolia 12842 T 7 7
157 Mongolia 12843 G 7 7
158 Mongolia 12844 G 7 7
159 Mongolia 12845 G 7 7
160 Mongolia 12846 C 7 7
161 Mongolia 12847 T 7 7
162 Mongolia 12848 A 7 7
163 Mongolia 12849 G 7 7
164 Mongolia 12850 A 7 7
165 Mongolia 12851 T 7 7
166 Mongolia 12852 T 7 7
167 Mongolia 12853 C 7 7
168 Mongolia 12854 C 7 7
169 Mongolia 12855 C 7 7
170 Mongolia 12856 T 7 7
171 Mongolia 12857 A 7 7
172 Mongolia 12858 A 7 7
173 Mongolia 12859 G 7 7
174 Mongolia 12860 A 7 7
175 Mongolia 12861 G 7 7
176 Mongolia 12862 T 7 7
177 Mongolia 12863 G 7 7
178 Mongolia 12864 A 7 7
179 Mongolia 12865 T 7 7
180 Mongolia 12866 G 7 7
181 Mongolia 12867 G 7 7
182 Mongolia 12868 A 7 7
183 Mongolia 12869 A 7 7
184 Mongolia 12870 C 7 7
185 Mongolia 12871 T 7 7
186 Mongolia 12872 G 7 7
187 Mongolia 12873 G 7 7
188 Mongolia 12874 T 7 7
189 Mongolia 12875 A 7 7
190 Mongolia 12876 C 7 7
191 Mongolia 12877 T 7 7
192 Mongolia 12878 A 7 7
193 Mongolia 12879 T 7 7
194 Mongolia 12880 C 7 7
195 Mongolia 12881 T 7 7
196 Mongolia 12882 A 7 7
197 Mongolia 12883 T 7 7
198 Mongolia 12884 A 7 7
199 Mongolia 12885 C 7 7
200 Mongolia 12886 A 7 7
201 Mongolia 12887 G 7 7
202 Mongolia 12888 A 7 7
203 Mongolia 12889 A 7 7
204 Mongolia 12890 C 7 7
205 Mongolia 12891 T 7 7
206 Mongolia 12892 G 7 7
207 Mongolia 12893 G 7 7
208 Mongolia 12894 A 7 7
209 Mongolia 12895 A 7 7
210 Mongolia 12896 C 7 7
211 Mongolia 12897 C 7 7
212 Mongolia 12898 A 7 7
213 Mongolia 12899 C 7 7
214 Mongolia 12900 C 7 7
215 Mongolia 12901 T 7 7
216 Mongolia 12902 T 7 7
217 Mongolia 12903 G 7 7
218 Mongolia 12904 T 7 7
219 Mongolia 12905 A 7 7
220 Mongolia 12906 G 7 7
221 Mongolia 12907 G 7 7
222 Mongolia 12908 T 7 7
223 Mongolia 12909 T 7 7
224 Mongolia 12910 T 7 7
225 Mongolia 12911 G 7 7
226 Mongolia 12912 T 7 7
227 Mongolia 12913 T 7 7
228 Mongolia 12914 A 7 7
229 Mongolia 12915 C 7 7
230 Mongolia 12916 A 7 7
231 Mongolia 12917 G 7 7
232 Mongolia 12918 A 7 7
233 Mongolia 12919 C 7 7
234 Mongolia 12920 A 7 7
235 Mongolia 12921 C 7 7
236 Mongolia 12922 A 7 7
237 Mongolia 12923 C 7 7
238 Mongolia 12924 C 7 7
239 Mongolia 12925 T 7 7
240 Mongolia 12926 A 7 7
241 Mongolia 12927 A 7 7
242 Mongolia 12928 A 7 7
243 Mongolia 12929 G 7 7
244 Mongolia 12930 G 7 7
245 Mongolia 12931 T 7 7
246 Mongolia 12932 C 7 7
247 Mongolia 12933 C 7 7
248 Mongolia 12934 T 7 7
249 Mongolia 12935 A 7 7
250 Mongolia 12936 A 7 7
251 Mongolia 12937 A 7 7
252 Mongolia 12938 G 7 7
253 Mongolia 12939 T 7 7
254 Mongolia 12940 G 7 7
255 Mongolia 12941 A 7 7
256 Mongolia 12942 A 7 7
257 Mongolia 12943 G 7 7
258 Mongolia 12944 T 7 7
259 Mongolia 12945 A 7 7
260 Mongolia 12946 T 7 7
261 Mongolia 12947 T 7 7
262 Mongolia 12948 T 7 7
263 Mongolia 12949 A 7 7
264 Mongolia 12950 T 7 7
265 Mongolia 12951 A 7 7
266 Mongolia 12952 C 7 7
267 Mongolia 12953 T 7 7
268 Mongolia 12954 T 7 7
269 Mongolia 12955 T 7 7
270 Mongolia 12956 A 7 7
271 Mongolia 12957 T 7 7
272 Mongolia 12958 T 7 7
273 Mongolia 12959 A 7 7
274 Mongolia 12960 A 7 7
275 Mongolia 12961 A 7 7
276 Mongolia 12962 G 7 7
277 Mongolia 12963 G 7 7
278 Mongolia 12964 A 7 7
279 Mongolia 12965 T 7 7
280 Mongolia 12966 T 7 7
281 Mongolia 12967 A 7 7
282 Mongolia 12968 A 7 7
283 Mongolia 12969 A 7 7
284 Mongolia 12970 C 7 7
285 Mongolia 12971 A 7 7
286 Mongolia 12972 A 7 7
287 Mongolia 12973 C 7 7
288 Mongolia 12974 C 7 7
289 Mongolia 12975 T 7 7
290 Mongolia 12976 A 7 7
291 Mongolia 12977 A 7 7
292 Mongolia 12978 A 7 7
293 Mongolia 12979 T 7 7
294 Mongolia 12980 A 7 7
295 Mongolia 12981 G 7 7
296 Mongolia 12982 A 7 7
297 Mongolia 12983 G 7 7
298 Mongolia 12984 G 7 7
299 Mongolia 12985 T 7 7
300 Mongolia 12986 A 7 7
301 Mongolia 12987 T 7 7
302 Mongolia 12988 G 7 7
303 Mongolia 12989 G 7 7
304 Mongolia 12990 T 7 7
305 Mongolia 12991 A 7 7
306 Mongolia 12992 C 7 7
307 Mongolia 12993 T 7 7
308 Mongolia 12994 T 7 7
309 Mongolia 12995 G 7 7
310 Mongolia 12996 G 7 7
311 Mongolia 12997 T 7 7
312 Mongolia 12998 A 7 7
313 Mongolia 12999 G 7 7
314 Mongolia 13000 T 7 7
315 Mongolia 13001 T 7 7
316 Mongolia 13002 T 7 7
317 Mongolia 13003 A 7 7
318 Mongolia 13004 G 7 7
319 Mongolia 13005 C 7 7
320 Mongolia 13006 T 7 7
321 Mongolia 13007 G 7 7
322 Mongolia 13008 C 7 7
323 Mongolia 13009 C 7 7
324 Mongolia 13010 A 7 7
325 Mongolia 13011 C 7 7
326 Mongolia 13012 A 7 7
327 Mongolia 13013 G 7 7
328 Mongolia 13014 T 7 7
329 Mongolia 13015 A 7 7
330 Mongolia 13016 C 7 7
331 Mongolia 13017 G 7 7
332 Mongolia 13018 T 7 7
333 Mongolia 13019 C 7 7
334 Mongolia 13020 T 7 7
335 Mongolia 13021 A 7 7
336 Mongolia 13022 C 7 7
337 Mongolia 13023 A 7 7
338 Mongolia 13024 A 7 7