National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30 1                                      
C   9                                        
D   18     2                                  
E   9                                        
F   12                                        
G   27                                        
H                                            
I   6                                   1    
K   21                                        
L   45                   1                    
M   6                                        
N   21                                        
P   18                   1                    
Q   12             1                          
R   18                                        
S   15                                        
T   36               4                        
V   18                                        
W   3                                        
Y   15                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mexico 12686 A 597 597
1 Mexico 12687 A 597 597
2 Mexico 12688 T 597 597
3 Mexico 12689 A 597 597
4 Mexico 12690 A 597 597
5 Mexico 12691 T 597 597
6 Mexico 12692 G 597 597
7 Mexico 12693 A 597 597
8 Mexico 12694 G 597 597
9 Mexico 12695 C 597 597
10 Mexico 12696 T 597 597
11 Mexico 12697 T 597 597
12 Mexico 12698 A 597 597
13 Mexico 12699 G 597 597
14 Mexico 12700 T 597 597
15 Mexico 12701 C 597 597
16 Mexico 12702 C 597 597
17 Mexico 12703 T 597 596
18 Mexico 12704 G 597 596
19 Mexico 12705 T 597 596
20 Mexico 12706 T 597 597
21 Mexico 12707 G 597 597
22 Mexico 12708 C 597 597
23 Mexico 12709 A 597 597
24 Mexico 12710 C 597 597
25 Mexico 12711 T 597 597
26 Mexico 12712 A 597 597
27 Mexico 12713 C 597 597
28 Mexico 12714 G 597 597
29 Mexico 12715 A 597 597
30 Mexico 12716 C 597 597
31 Mexico 12717 A 597 597
32 Mexico 12718 G 597 597
33 Mexico 12719 A 597 597
34 Mexico 12720 T 597 597
35 Mexico 12721 G 597 597
36 Mexico 12722 T 597 597
37 Mexico 12723 C 597 597
38 Mexico 12724 T 597 597
39 Mexico 12725 T 597 597
40 Mexico 12726 G 597 597
41 Mexico 12727 T 597 597
42 Mexico 12728 G 597 597
43 Mexico 12729 C 597 597
44 Mexico 12730 T 597 597
45 Mexico 12731 G 597 597
46 Mexico 12732 C 597 597
47 Mexico 12733 C 598 598
48 Mexico 12734 G 598 598
49 Mexico 12735 G 598 598
50 Mexico 12736 T 598 598
51 Mexico 12737 A 598 598
52 Mexico 12738 C 598 598
53 Mexico 12739 T 598 598
54 Mexico 12740 A 598 598
55 Mexico 12741 C 598 598
56 Mexico 12742 A 598 598
57 Mexico 12743 C 598 598
58 Mexico 12744 A 598 598
59 Mexico 12745 A 598 598
60 Mexico 12746 A 598 598
61 Mexico 12747 C 598 598
62 Mexico 12748 T 598 598
63 Mexico 12749 G 598 598
64 Mexico 12750 C 598 598
65 Mexico 12751 T G 598 597 Ala4162Ala
66 Mexico 12752 T 598 598
67 Mexico 12753 G 598 598
68 Mexico 12754 C 598 598
69 Mexico 12755 A 598 598
70 Mexico 12756 C T 598 597 Thr4164Ile
71 Mexico 12757 T 598 598
72 Mexico 12758 G 598 598
73 Mexico 12759 A 598 598
74 Mexico 12760 T 598 598
75 Mexico 12761 G 598 598
76 Mexico 12762 A 598 598
77 Mexico 12763 C 598 598
78 Mexico 12764 A 598 598
79 Mexico 12765 A 598 598
80 Mexico 12766 T 598 598
81 Mexico 12767 G 598 598
82 Mexico 12768 C 598 598
83 Mexico 12769 G 598 597
84 Mexico 12770 T 598 598
85 Mexico 12771 T 598 598
86 Mexico 12772 A 598 598
87 Mexico 12773 G 598 598
88 Mexico 12774 C 598 598
89 Mexico 12775 T 598 598
90 Mexico 12776 T 598 598
91 Mexico 12777 A 598 598
92 Mexico 12778 C 598 598
93 Mexico 12779 T 598 598
94 Mexico 12780 A 598 598
95 Mexico 12781 C T 598 597 Tyr4172Tyr
96 Mexico 12782 A 598 598
97 Mexico 12783 A 598 598
98 Mexico 12784 C 598 598
99 Mexico 12785 A 598 598
100 Mexico 12786 C 598 598
101 Mexico 12787 A 598 598
102 Mexico 12788 A 598 598
103 Mexico 12789 C T 598 595 Thr4175Ile
104 Mexico 12790 A 598 598
105 Mexico 12791 A 598 598
106 Mexico 12792 A 598 598
107 Mexico 12793 G 598 598
108 Mexico 12794 G 598 598
109 Mexico 12795 G 598 598
110 Mexico 12796 A 598 598
111 Mexico 12797 G 598 598
112 Mexico 12798 G 598 598
113 Mexico 12799 T 598 598
114 Mexico 12800 A 598 598
115 Mexico 12801 G 598 598
116 Mexico 12802 G 598 598
117 Mexico 12803 T 598 598
118 Mexico 12804 T 598 598
119 Mexico 12805 T 598 598
120 Mexico 12806 G 598 598
121 Mexico 12807 T 598 598
122 Mexico 12808 A 598 598
123 Mexico 12809 C 598 598
124 Mexico 12810 T 598 598
125 Mexico 12811 T 598 598
126 Mexico 12812 G 598 598
127 Mexico 12813 C 598 598
128 Mexico 12814 A 598 598
129 Mexico 12815 C 598 598
130 Mexico 12816 T 598 598
131 Mexico 12817 G 598 598
132 Mexico 12818 T 598 598
133 Mexico 12819 T 598 598
134 Mexico 12820 A 598 598
135 Mexico 12821 T 598 598
136 Mexico 12822 C 598 598
137 Mexico 12823 C 598 598
138 Mexico 12824 G 598 598
139 Mexico 12825 A 598 598
140 Mexico 12826 T 598 598
141 Mexico 12827 T 598 598
142 Mexico 12828 T 598 598
143 Mexico 12829 A 598 598
144 Mexico 12830 C 598 598
145 Mexico 12831 A 598 598
146 Mexico 12832 G T 598 596 Gln4189His
147 Mexico 12833 G 598 598
148 Mexico 12834 A 598 598
149 Mexico 12835 T C 598 596 Asp4190Asp
150 Mexico 12836 T 598 598
151 Mexico 12837 T 598 598
152 Mexico 12838 G 598 598
153 Mexico 12839 A 598 598
154 Mexico 12840 A 598 598
155 Mexico 12841 A 598 598
156 Mexico 12842 T 598 598
157 Mexico 12843 G 598 598
158 Mexico 12844 G 598 598
159 Mexico 12845 G 598 598
160 Mexico 12846 C 598 598
161 Mexico 12847 T 598 598
162 Mexico 12848 A 598 598
163 Mexico 12849 G 598 598
164 Mexico 12850 A 598 598
165 Mexico 12851 T 598 598
166 Mexico 12852 T 598 598
167 Mexico 12853 C 598 598
168 Mexico 12854 C 598 598
169 Mexico 12855 C 598 598
170 Mexico 12856 T 598 598
171 Mexico 12857 A 598 598
172 Mexico 12858 A 598 598
173 Mexico 12859 G 598 598
174 Mexico 12860 A 598 598
175 Mexico 12861 G 598 598
176 Mexico 12862 T 598 598
177 Mexico 12863 G 598 598
178 Mexico 12864 A 598 598
179 Mexico 12865 T C 598 597 Asp4200Asp
180 Mexico 12866 G 598 598
181 Mexico 12867 G 598 598
182 Mexico 12868 A 598 598
183 Mexico 12869 A 598 598
184 Mexico 12870 C T 598 597 Thr4202Ile
185 Mexico 12871 T 598 598
186 Mexico 12872 G 598 598
187 Mexico 12873 G 598 598
188 Mexico 12874 T 598 598
189 Mexico 12875 A 598 598
190 Mexico 12876 C 598 598
191 Mexico 12877 T 598 598
192 Mexico 12878 A G 598 597 Ile4205Val
193 Mexico 12879 T 598 598
194 Mexico 12880 C 598 598
195 Mexico 12881 T 598 598
196 Mexico 12882 A 598 598
197 Mexico 12883 T 598 598
198 Mexico 12884 A 598 598
199 Mexico 12885 C T 598 597 Thr4207Ile
200 Mexico 12886 A 598 598
201 Mexico 12887 G 598 598
202 Mexico 12888 A 598 598
203 Mexico 12889 A 598 598
204 Mexico 12890 C 598 598
205 Mexico 12891 T 598 598
206 Mexico 12892 G 598 598
207 Mexico 12893 G 598 598
208 Mexico 12894 A 598 598
209 Mexico 12895 A 598 598
210 Mexico 12896 C 598 598
211 Mexico 12897 C 598 598
212 Mexico 12898 A 598 598
213 Mexico 12899 C 598 598
214 Mexico 12900 C 598 598
215 Mexico 12901 T 598 598
216 Mexico 12902 T 598 598
217 Mexico 12903 G 598 598
218 Mexico 12904 T 598 598
219 Mexico 12905 A 598 598
220 Mexico 12906 G 598 598
221 Mexico 12907 G 598 598
222 Mexico 12908 T 598 598
223 Mexico 12909 T 598 598
224 Mexico 12910 T 598 598
225 Mexico 12911 G 598 598
226 Mexico 12912 T 598 598
227 Mexico 12913 T 598 598
228 Mexico 12914 A 598 598
229 Mexico 12915 C 598 598
230 Mexico 12916 A 598 598
231 Mexico 12917 G 598 598
232 Mexico 12918 A 598 598
233 Mexico 12919 C 598 598
234 Mexico 12920 A 598 598
235 Mexico 12921 C 598 598
236 Mexico 12922 A 598 598
237 Mexico 12923 C 598 598
238 Mexico 12924 C T 598 596 Pro4220Leu
239 Mexico 12925 T 598 598
240 Mexico 12926 A 598 598
241 Mexico 12927 A 598 598
242 Mexico 12928 A 598 598
243 Mexico 12929 G 598 598
244 Mexico 12930 G 598 598
245 Mexico 12931 T 598 598
246 Mexico 12932 C 598 598
247 Mexico 12933 C 598 598
248 Mexico 12934 T 598 598
249 Mexico 12935 A 598 598
250 Mexico 12936 A 598 598
251 Mexico 12937 A 598 598
252 Mexico 12938 G 598 598
253 Mexico 12939 T 598 598
254 Mexico 12940 G 598 598
255 Mexico 12941 A 598 598
256 Mexico 12942 A 598 598
257 Mexico 12943 G 598 598
258 Mexico 12944 T 598 598
259 Mexico 12945 A 598 598
260 Mexico 12946 T 598 598
261 Mexico 12947 T 598 598
262 Mexico 12948 T 598 598
263 Mexico 12949 A 598 598
264 Mexico 12950 T 598 598
265 Mexico 12951 A 598 598
266 Mexico 12952 C 598 598
267 Mexico 12953 T 598 598
268 Mexico 12954 T 598 598
269 Mexico 12955 T 598 598
270 Mexico 12956 A 598 598
271 Mexico 12957 T 598 598
272 Mexico 12958 T 598 598
273 Mexico 12959 A 598 598
274 Mexico 12960 A 598 598
275 Mexico 12961 A 598 598
276 Mexico 12962 G 598 598
277 Mexico 12963 G 598 598
278 Mexico 12964 A 598 598
279 Mexico 12965 T 598 598
280 Mexico 12966 T 598 598
281 Mexico 12967 A 598 598
282 Mexico 12968 A 598 598
283 Mexico 12969 A 598 598
284 Mexico 12970 C 598 598
285 Mexico 12971 A 598 598
286 Mexico 12972 A 598 598
287 Mexico 12973 C 598 598
288 Mexico 12974 C 598 598
289 Mexico 12975 T 598 598
290 Mexico 12976 A 598 598
291 Mexico 12977 A 598 598
292 Mexico 12978 A 598 598
293 Mexico 12979 T 598 598
294 Mexico 12980 A 598 598
295 Mexico 12981 G 598 598
296 Mexico 12982 A 598 598
297 Mexico 12983 G 598 598
298 Mexico 12984 G 598 598
299 Mexico 12985 T 598 598
300 Mexico 12986 A 598 598
301 Mexico 12987 T 598 598
302 Mexico 12988 G 598 598
303 Mexico 12989 G 598 598
304 Mexico 12990 T 598 598
305 Mexico 12991 A 598 598
306 Mexico 12992 C 598 598
307 Mexico 12993 T 598 598
308 Mexico 12994 T 598 598
309 Mexico 12995 G 598 598
310 Mexico 12996 G 598 598
311 Mexico 12997 T 598 598
312 Mexico 12998 A 598 598
313 Mexico 12999 G 598 598
314 Mexico 13000 T 598 598
315 Mexico 13001 T 598 598
316 Mexico 13002 T 598 598
317 Mexico 13003 A 598 598
318 Mexico 13004 G 598 598
319 Mexico 13005 C 598 598
320 Mexico 13006 T 598 598
321 Mexico 13007 G 598 598
322 Mexico 13008 C 598 598
323 Mexico 13009 C 598 598
324 Mexico 13010 A 598 598
325 Mexico 13011 C 598 598
326 Mexico 13012 A 598 598
327 Mexico 13013 G 598 598
328 Mexico 13014 T 598 598
329 Mexico 13015 A 598 598
330 Mexico 13016 C 598 598
331 Mexico 13017 G 598 598
332 Mexico 13018 T 598 598
333 Mexico 13019 C T 598 596 Leu4252Leu
334 Mexico 13020 T 598 598
335 Mexico 13021 A 598 598
336 Mexico 13022 C 598 598
337 Mexico 13023 A 598 598
338 Mexico 13024 A 598 598