National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Malta 12686 A 10 10
1 Malta 12687 A 10 10
2 Malta 12688 T 10 10
3 Malta 12689 A 10 10
4 Malta 12690 A 10 10
5 Malta 12691 T 10 10
6 Malta 12692 G 10 10
7 Malta 12693 A 10 10
8 Malta 12694 G 10 10
9 Malta 12695 C 10 10
10 Malta 12696 T 10 10
11 Malta 12697 T 10 10
12 Malta 12698 A 10 10
13 Malta 12699 G 10 10
14 Malta 12700 T 10 10
15 Malta 12701 C 10 10
16 Malta 12702 C 10 10
17 Malta 12703 T 10 10
18 Malta 12704 G 10 10
19 Malta 12705 T 10 10
20 Malta 12706 T 10 10
21 Malta 12707 G 10 10
22 Malta 12708 C 10 10
23 Malta 12709 A 10 10
24 Malta 12710 C 10 10
25 Malta 12711 T 10 10
26 Malta 12712 A 10 10
27 Malta 12713 C 10 10
28 Malta 12714 G 10 10
29 Malta 12715 A 10 10
30 Malta 12716 C 10 10
31 Malta 12717 A 10 10
32 Malta 12718 G 10 10
33 Malta 12719 A 10 10
34 Malta 12720 T 10 10
35 Malta 12721 G 10 10
36 Malta 12722 T 10 10
37 Malta 12723 C 10 10
38 Malta 12724 T 10 10
39 Malta 12725 T 10 10
40 Malta 12726 G 10 10
41 Malta 12727 T 10 10
42 Malta 12728 G 10 10
43 Malta 12729 C 10 10
44 Malta 12730 T 10 10
45 Malta 12731 G 10 10
46 Malta 12732 C 10 10
47 Malta 12733 C 10 10
48 Malta 12734 G 10 10
49 Malta 12735 G 10 10
50 Malta 12736 T 10 10
51 Malta 12737 A 10 10
52 Malta 12738 C 10 10
53 Malta 12739 T 10 10
54 Malta 12740 A 10 10
55 Malta 12741 C 10 10
56 Malta 12742 A 10 10
57 Malta 12743 C 10 10
58 Malta 12744 A 10 10
59 Malta 12745 A 10 10
60 Malta 12746 A 10 10
61 Malta 12747 C 10 10
62 Malta 12748 T 10 10
63 Malta 12749 G 10 10
64 Malta 12750 C 10 10
65 Malta 12751 T 10 10
66 Malta 12752 T 10 10
67 Malta 12753 G 10 10
68 Malta 12754 C 10 10
69 Malta 12755 A 10 10
70 Malta 12756 C 10 10
71 Malta 12757 T 10 10
72 Malta 12758 G 10 10
73 Malta 12759 A 10 10
74 Malta 12760 T 10 10
75 Malta 12761 G 10 10
76 Malta 12762 A 10 10
77 Malta 12763 C 10 10
78 Malta 12764 A 10 10
79 Malta 12765 A 10 10
80 Malta 12766 T 10 10
81 Malta 12767 G 10 10
82 Malta 12768 C 10 10
83 Malta 12769 G 10 10
84 Malta 12770 T 10 10
85 Malta 12771 T 10 10
86 Malta 12772 A 10 10
87 Malta 12773 G 10 10
88 Malta 12774 C 10 10
89 Malta 12775 T 10 10
90 Malta 12776 T 10 10
91 Malta 12777 A 10 10
92 Malta 12778 C 10 10
93 Malta 12779 T 10 10
94 Malta 12780 A 10 10
95 Malta 12781 C 10 10
96 Malta 12782 A 10 10
97 Malta 12783 A 10 10
98 Malta 12784 C 10 10
99 Malta 12785 A 10 10
100 Malta 12786 C 10 10
101 Malta 12787 A 10 10
102 Malta 12788 A 10 10
103 Malta 12789 C 10 10
104 Malta 12790 A 10 10
105 Malta 12791 A 10 10
106 Malta 12792 A 10 10
107 Malta 12793 G 10 10
108 Malta 12794 G 10 10
109 Malta 12795 G 10 10
110 Malta 12796 A 10 10
111 Malta 12797 G 10 10
112 Malta 12798 G 10 10
113 Malta 12799 T 10 10
114 Malta 12800 A 10 10
115 Malta 12801 G 10 10
116 Malta 12802 G 10 10
117 Malta 12803 T 10 10
118 Malta 12804 T 10 10
119 Malta 12805 T 10 10
120 Malta 12806 G 10 10
121 Malta 12807 T 10 10
122 Malta 12808 A 10 10
123 Malta 12809 C 10 10
124 Malta 12810 T 10 10
125 Malta 12811 T 10 10
126 Malta 12812 G 10 10
127 Malta 12813 C 10 10
128 Malta 12814 A 10 10
129 Malta 12815 C 10 10
130 Malta 12816 T 10 10
131 Malta 12817 G 10 10
132 Malta 12818 T 10 10
133 Malta 12819 T 10 10
134 Malta 12820 A 10 10
135 Malta 12821 T 10 10
136 Malta 12822 C 10 10
137 Malta 12823 C 10 10
138 Malta 12824 G 10 10
139 Malta 12825 A 10 10
140 Malta 12826 T 10 10
141 Malta 12827 T 10 10
142 Malta 12828 T 10 10
143 Malta 12829 A 10 10
144 Malta 12830 C 10 10
145 Malta 12831 A 10 10
146 Malta 12832 G 10 10
147 Malta 12833 G 10 10
148 Malta 12834 A 10 10
149 Malta 12835 T 10 10
150 Malta 12836 T 10 10
151 Malta 12837 T 10 10
152 Malta 12838 G 10 10
153 Malta 12839 A 10 10
154 Malta 12840 A 10 10
155 Malta 12841 A 10 10
156 Malta 12842 T 10 10
157 Malta 12843 G 10 10
158 Malta 12844 G 10 10
159 Malta 12845 G 10 10
160 Malta 12846 C 10 10
161 Malta 12847 T 10 10
162 Malta 12848 A 10 10
163 Malta 12849 G 10 10
164 Malta 12850 A 10 10
165 Malta 12851 T 10 10
166 Malta 12852 T 10 10
167 Malta 12853 C 10 10
168 Malta 12854 C 10 10
169 Malta 12855 C 10 10
170 Malta 12856 T 10 10
171 Malta 12857 A 10 10
172 Malta 12858 A 10 10
173 Malta 12859 G 10 10
174 Malta 12860 A 10 10
175 Malta 12861 G 10 10
176 Malta 12862 T 10 10
177 Malta 12863 G 10 10
178 Malta 12864 A 10 10
179 Malta 12865 T 10 10
180 Malta 12866 G 10 10
181 Malta 12867 G 10 10
182 Malta 12868 A 10 10
183 Malta 12869 A 10 10
184 Malta 12870 C 10 10
185 Malta 12871 T 10 10
186 Malta 12872 G 10 10
187 Malta 12873 G 10 10
188 Malta 12874 T 10 10
189 Malta 12875 A 10 10
190 Malta 12876 C 10 10
191 Malta 12877 T 10 10
192 Malta 12878 A 10 10
193 Malta 12879 T 10 10
194 Malta 12880 C 10 10
195 Malta 12881 T 10 10
196 Malta 12882 A 10 10
197 Malta 12883 T 10 10
198 Malta 12884 A 10 10
199 Malta 12885 C 10 10
200 Malta 12886 A 10 10
201 Malta 12887 G 10 10
202 Malta 12888 A 10 10
203 Malta 12889 A 10 10
204 Malta 12890 C 10 10
205 Malta 12891 T 10 10
206 Malta 12892 G 10 10
207 Malta 12893 G 10 10
208 Malta 12894 A 10 10
209 Malta 12895 A 10 10
210 Malta 12896 C 10 10
211 Malta 12897 C 10 10
212 Malta 12898 A 10 10
213 Malta 12899 C 10 10
214 Malta 12900 C 10 10
215 Malta 12901 T 10 10
216 Malta 12902 T 10 10
217 Malta 12903 G 10 10
218 Malta 12904 T 10 10
219 Malta 12905 A 10 10
220 Malta 12906 G 10 10
221 Malta 12907 G 10 10
222 Malta 12908 T 10 10
223 Malta 12909 T 10 10
224 Malta 12910 T 10 10
225 Malta 12911 G 10 10
226 Malta 12912 T 10 10
227 Malta 12913 T 10 10
228 Malta 12914 A 10 10
229 Malta 12915 C 10 10
230 Malta 12916 A 10 10
231 Malta 12917 G 10 10
232 Malta 12918 A 10 10
233 Malta 12919 C 10 10
234 Malta 12920 A 10 10
235 Malta 12921 C 10 10
236 Malta 12922 A 10 10
237 Malta 12923 C 10 10
238 Malta 12924 C 10 10
239 Malta 12925 T 10 10
240 Malta 12926 A 10 10
241 Malta 12927 A 10 10
242 Malta 12928 A 10 10
243 Malta 12929 G 10 10
244 Malta 12930 G 10 10
245 Malta 12931 T 10 10
246 Malta 12932 C 10 10
247 Malta 12933 C 10 10
248 Malta 12934 T 10 10
249 Malta 12935 A 10 10
250 Malta 12936 A 10 10
251 Malta 12937 A 10 10
252 Malta 12938 G 10 10
253 Malta 12939 T 10 10
254 Malta 12940 G 10 10
255 Malta 12941 A 10 10
256 Malta 12942 A 10 10
257 Malta 12943 G 10 10
258 Malta 12944 T 10 10
259 Malta 12945 A 10 10
260 Malta 12946 T 10 10
261 Malta 12947 T 10 10
262 Malta 12948 T 10 10
263 Malta 12949 A 10 10
264 Malta 12950 T 10 10
265 Malta 12951 A 10 10
266 Malta 12952 C 10 10
267 Malta 12953 T 10 10
268 Malta 12954 T 10 10
269 Malta 12955 T 10 10
270 Malta 12956 A 10 10
271 Malta 12957 T 10 10
272 Malta 12958 T 10 10
273 Malta 12959 A 10 10
274 Malta 12960 A 10 10
275 Malta 12961 A 10 10
276 Malta 12962 G 10 10
277 Malta 12963 G 10 10
278 Malta 12964 A 10 10
279 Malta 12965 T 10 10
280 Malta 12966 T 10 10
281 Malta 12967 A 10 10
282 Malta 12968 A 10 10
283 Malta 12969 A 10 10
284 Malta 12970 C 10 10
285 Malta 12971 A 10 10
286 Malta 12972 A 10 10
287 Malta 12973 C 10 10
288 Malta 12974 C 10 10
289 Malta 12975 T 10 10
290 Malta 12976 A 10 10
291 Malta 12977 A 10 10
292 Malta 12978 A 10 10
293 Malta 12979 T 10 10
294 Malta 12980 A 10 10
295 Malta 12981 G 10 10
296 Malta 12982 A 10 10
297 Malta 12983 G 10 10
298 Malta 12984 G 10 10
299 Malta 12985 T 10 10
300 Malta 12986 A 10 10
301 Malta 12987 T 10 10
302 Malta 12988 G 10 10
303 Malta 12989 G 10 10
304 Malta 12990 T 10 10
305 Malta 12991 A 10 10
306 Malta 12992 C 10 10
307 Malta 12993 T 10 10
308 Malta 12994 T 10 10
309 Malta 12995 G 10 10
310 Malta 12996 G 10 10
311 Malta 12997 T 10 10
312 Malta 12998 A 10 10
313 Malta 12999 G 10 10
314 Malta 13000 T 10 10
315 Malta 13001 T 10 10
316 Malta 13002 T 10 10
317 Malta 13003 A 10 10
318 Malta 13004 G 10 10
319 Malta 13005 C 10 10
320 Malta 13006 T 10 10
321 Malta 13007 G 10 10
322 Malta 13008 C 10 10
323 Malta 13009 C 10 10
324 Malta 13010 A 10 10
325 Malta 13011 C 10 10
326 Malta 13012 A 10 10
327 Malta 13013 G 10 10
328 Malta 13014 T 10 10
329 Malta 13015 A 10 10
330 Malta 13016 C 10 10
331 Malta 13017 G 10 10
332 Malta 13018 T 10 10
333 Malta 13019 C 10 10
334 Malta 13020 T 10 10
335 Malta 13021 A 10 10
336 Malta 13022 C 10 10
337 Malta 13023 A 10 10
338 Malta 13024 A 10 10