National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Mali 12686 A 24 24
1 Mali 12687 A 24 24
2 Mali 12688 T 24 24
3 Mali 12689 A 24 24
4 Mali 12690 A 24 24
5 Mali 12691 T 24 24
6 Mali 12692 G 24 24
7 Mali 12693 A 24 24
8 Mali 12694 G 24 24
9 Mali 12695 C 24 24
10 Mali 12696 T 24 24
11 Mali 12697 T 24 24
12 Mali 12698 A 24 24
13 Mali 12699 G 24 24
14 Mali 12700 T 24 24
15 Mali 12701 C 24 24
16 Mali 12702 C 24 24
17 Mali 12703 T 24 24
18 Mali 12704 G 24 24
19 Mali 12705 T 24 24
20 Mali 12706 T 24 24
21 Mali 12707 G 24 24
22 Mali 12708 C 24 24
23 Mali 12709 A 24 24
24 Mali 12710 C 24 24
25 Mali 12711 T 24 24
26 Mali 12712 A 24 24
27 Mali 12713 C 24 24
28 Mali 12714 G 24 24
29 Mali 12715 A 24 24
30 Mali 12716 C 24 24
31 Mali 12717 A 24 24
32 Mali 12718 G 24 24
33 Mali 12719 A 24 24
34 Mali 12720 T 24 24
35 Mali 12721 G 24 24
36 Mali 12722 T 24 24
37 Mali 12723 C 24 24
38 Mali 12724 T 24 24
39 Mali 12725 T 24 24
40 Mali 12726 G 24 24
41 Mali 12727 T 24 24
42 Mali 12728 G 24 24
43 Mali 12729 C 24 24
44 Mali 12730 T 24 24
45 Mali 12731 G 24 24
46 Mali 12732 C 24 24
47 Mali 12733 C 24 24
48 Mali 12734 G 24 24
49 Mali 12735 G 24 24
50 Mali 12736 T 24 24
51 Mali 12737 A 24 24
52 Mali 12738 C 24 24
53 Mali 12739 T 24 24
54 Mali 12740 A 24 24
55 Mali 12741 C 24 24
56 Mali 12742 A 24 24
57 Mali 12743 C 24 24
58 Mali 12744 A 24 24
59 Mali 12745 A 24 24
60 Mali 12746 A 24 24
61 Mali 12747 C 24 24
62 Mali 12748 T 24 24
63 Mali 12749 G 24 24
64 Mali 12750 C 24 24
65 Mali 12751 T 24 24
66 Mali 12752 T 24 24
67 Mali 12753 G 24 24
68 Mali 12754 C 24 24
69 Mali 12755 A 24 24
70 Mali 12756 C 24 24
71 Mali 12757 T 24 24
72 Mali 12758 G 24 24
73 Mali 12759 A 24 24
74 Mali 12760 T 24 24
75 Mali 12761 G 24 24
76 Mali 12762 A 24 24
77 Mali 12763 C 24 24
78 Mali 12764 A 24 24
79 Mali 12765 A 24 24
80 Mali 12766 T 24 24
81 Mali 12767 G 24 24
82 Mali 12768 C 24 24
83 Mali 12769 G 24 24
84 Mali 12770 T 24 24
85 Mali 12771 T 24 24
86 Mali 12772 A 24 24
87 Mali 12773 G 24 24
88 Mali 12774 C 24 24
89 Mali 12775 T 24 24
90 Mali 12776 T 24 24
91 Mali 12777 A 24 24
92 Mali 12778 C 24 24
93 Mali 12779 T 24 24
94 Mali 12780 A 24 24
95 Mali 12781 C 24 24
96 Mali 12782 A 24 24
97 Mali 12783 A 24 24
98 Mali 12784 C 24 24
99 Mali 12785 A 24 24
100 Mali 12786 C 24 24
101 Mali 12787 A 24 24
102 Mali 12788 A 24 24
103 Mali 12789 C 24 24
104 Mali 12790 A 24 24
105 Mali 12791 A 24 24
106 Mali 12792 A 24 24
107 Mali 12793 G 24 24
108 Mali 12794 G 24 24
109 Mali 12795 G 24 24
110 Mali 12796 A 24 24
111 Mali 12797 G 24 24
112 Mali 12798 G 24 24
113 Mali 12799 T 24 24
114 Mali 12800 A 24 24
115 Mali 12801 G 24 24
116 Mali 12802 G 24 24
117 Mali 12803 T 24 24
118 Mali 12804 T 24 24
119 Mali 12805 T 24 24
120 Mali 12806 G 24 24
121 Mali 12807 T 24 24
122 Mali 12808 A 24 24
123 Mali 12809 C 24 24
124 Mali 12810 T 24 24
125 Mali 12811 T 24 24
126 Mali 12812 G 24 24
127 Mali 12813 C 24 24
128 Mali 12814 A 24 24
129 Mali 12815 C 24 24
130 Mali 12816 T 24 24
131 Mali 12817 G 24 24
132 Mali 12818 T 24 24
133 Mali 12819 T 24 24
134 Mali 12820 A 24 24
135 Mali 12821 T 24 24
136 Mali 12822 C 24 24
137 Mali 12823 C 24 24
138 Mali 12824 G 24 24
139 Mali 12825 A 24 24
140 Mali 12826 T 24 24
141 Mali 12827 T 24 24
142 Mali 12828 T 24 24
143 Mali 12829 A 24 24
144 Mali 12830 C 24 24
145 Mali 12831 A 24 24
146 Mali 12832 G 24 24
147 Mali 12833 G 24 24
148 Mali 12834 A 24 24
149 Mali 12835 T 24 24
150 Mali 12836 T 24 24
151 Mali 12837 T 24 24
152 Mali 12838 G 24 24
153 Mali 12839 A 24 24
154 Mali 12840 A 24 24
155 Mali 12841 A 24 24
156 Mali 12842 T 24 24
157 Mali 12843 G 24 24
158 Mali 12844 G 24 24
159 Mali 12845 G 24 24
160 Mali 12846 C 24 24
161 Mali 12847 T 24 24
162 Mali 12848 A 24 24
163 Mali 12849 G 24 24
164 Mali 12850 A 24 24
165 Mali 12851 T 24 24
166 Mali 12852 T 24 24
167 Mali 12853 C 24 24
168 Mali 12854 C 24 24
169 Mali 12855 C 24 24
170 Mali 12856 T 24 24
171 Mali 12857 A 24 24
172 Mali 12858 A 24 24
173 Mali 12859 G 24 24
174 Mali 12860 A 24 24
175 Mali 12861 G 24 24
176 Mali 12862 T 24 24
177 Mali 12863 G 24 24
178 Mali 12864 A 24 24
179 Mali 12865 T 24 24
180 Mali 12866 G 24 24
181 Mali 12867 G 24 24
182 Mali 12868 A 24 24
183 Mali 12869 A 24 24
184 Mali 12870 C 24 24
185 Mali 12871 T 24 24
186 Mali 12872 G 24 24
187 Mali 12873 G 24 24
188 Mali 12874 T 24 24
189 Mali 12875 A 24 24
190 Mali 12876 C 24 24
191 Mali 12877 T 24 24
192 Mali 12878 A 24 24
193 Mali 12879 T 24 24
194 Mali 12880 C 24 24
195 Mali 12881 T 24 24
196 Mali 12882 A 24 24
197 Mali 12883 T 24 24
198 Mali 12884 A 24 24
199 Mali 12885 C 24 24
200 Mali 12886 A 24 24
201 Mali 12887 G 24 24
202 Mali 12888 A 24 24
203 Mali 12889 A 24 24
204 Mali 12890 C 24 24
205 Mali 12891 T 24 24
206 Mali 12892 G 24 24
207 Mali 12893 G 24 24
208 Mali 12894 A 24 24
209 Mali 12895 A 24 24
210 Mali 12896 C 24 24
211 Mali 12897 C 24 24
212 Mali 12898 A 24 24
213 Mali 12899 C 24 24
214 Mali 12900 C 24 24
215 Mali 12901 T 24 24
216 Mali 12902 T 24 24
217 Mali 12903 G 24 24
218 Mali 12904 T 24 24
219 Mali 12905 A 24 24
220 Mali 12906 G 24 24
221 Mali 12907 G 24 24
222 Mali 12908 T 24 24
223 Mali 12909 T 24 24
224 Mali 12910 T 24 24
225 Mali 12911 G 24 24
226 Mali 12912 T 24 24
227 Mali 12913 T 24 24
228 Mali 12914 A 24 24
229 Mali 12915 C 24 24
230 Mali 12916 A 24 24
231 Mali 12917 G 24 24
232 Mali 12918 A 24 24
233 Mali 12919 C 24 24
234 Mali 12920 A 24 24
235 Mali 12921 C 24 24
236 Mali 12922 A 24 24
237 Mali 12923 C 24 24
238 Mali 12924 C 24 24
239 Mali 12925 T 24 24
240 Mali 12926 A 24 24
241 Mali 12927 A 24 24
242 Mali 12928 A 24 24
243 Mali 12929 G 24 24
244 Mali 12930 G 24 24
245 Mali 12931 T 24 24
246 Mali 12932 C 24 24
247 Mali 12933 C 24 24
248 Mali 12934 T 24 24
249 Mali 12935 A 24 24
250 Mali 12936 A 24 24
251 Mali 12937 A 24 24
252 Mali 12938 G 24 24
253 Mali 12939 T 24 24
254 Mali 12940 G 24 24
255 Mali 12941 A 24 24
256 Mali 12942 A 24 24
257 Mali 12943 G 24 24
258 Mali 12944 T 24 24
259 Mali 12945 A 24 24
260 Mali 12946 T 24 24
261 Mali 12947 T 24 24
262 Mali 12948 T 24 24
263 Mali 12949 A 24 24
264 Mali 12950 T 24 24
265 Mali 12951 A 24 24
266 Mali 12952 C 24 24
267 Mali 12953 T 24 24
268 Mali 12954 T 24 24
269 Mali 12955 T 24 24
270 Mali 12956 A 24 24
271 Mali 12957 T 24 24
272 Mali 12958 T 24 24
273 Mali 12959 A 24 24
274 Mali 12960 A 24 24
275 Mali 12961 A 24 24
276 Mali 12962 G 24 24
277 Mali 12963 G 24 24
278 Mali 12964 A 24 24
279 Mali 12965 T 24 24
280 Mali 12966 T 24 24
281 Mali 12967 A 24 24
282 Mali 12968 A 24 24
283 Mali 12969 A 24 24
284 Mali 12970 C 24 24
285 Mali 12971 A 24 24
286 Mali 12972 A 24 24
287 Mali 12973 C 24 24
288 Mali 12974 C 24 24
289 Mali 12975 T 24 24
290 Mali 12976 A 24 24
291 Mali 12977 A 24 24
292 Mali 12978 A 24 24
293 Mali 12979 T 24 24
294 Mali 12980 A 24 24
295 Mali 12981 G 24 24
296 Mali 12982 A 24 24
297 Mali 12983 G 24 24
298 Mali 12984 G 24 24
299 Mali 12985 T 24 24
300 Mali 12986 A 24 24
301 Mali 12987 T 24 24
302 Mali 12988 G 24 24
303 Mali 12989 G 24 24
304 Mali 12990 T 24 24
305 Mali 12991 A 24 24
306 Mali 12992 C 24 24
307 Mali 12993 T 24 24
308 Mali 12994 T 24 24
309 Mali 12995 G 24 24
310 Mali 12996 G 24 24
311 Mali 12997 T 24 24
312 Mali 12998 A 24 24
313 Mali 12999 G 24 24
314 Mali 13000 T 24 24
315 Mali 13001 T 24 24
316 Mali 13002 T 24 24
317 Mali 13003 A 24 24
318 Mali 13004 G 24 24
319 Mali 13005 C 24 24
320 Mali 13006 T 24 24
321 Mali 13007 G 24 24
322 Mali 13008 C 24 24
323 Mali 13009 C 24 24
324 Mali 13010 A 24 24
325 Mali 13011 C 24 24
326 Mali 13012 A 24 24
327 Mali 13013 G 24 24
328 Mali 13014 T 24 24
329 Mali 13015 A 24 24
330 Mali 13016 C 24 24
331 Mali 13017 G 24 24
332 Mali 13018 T 24 24
333 Mali 13019 C 24 24
334 Mali 13020 T 24 24
335 Mali 13021 A 24 24
336 Mali 13022 C 24 24
337 Mali 13023 A 24 24
338 Mali 13024 A 24 24