National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Madagascar 12686 A 6 6
1 Madagascar 12687 A 6 6
2 Madagascar 12688 T 6 6
3 Madagascar 12689 A 6 6
4 Madagascar 12690 A 6 6
5 Madagascar 12691 T 6 6
6 Madagascar 12692 G 6 6
7 Madagascar 12693 A 6 6
8 Madagascar 12694 G 6 6
9 Madagascar 12695 C 6 6
10 Madagascar 12696 T 6 6
11 Madagascar 12697 T 6 6
12 Madagascar 12698 A 6 6
13 Madagascar 12699 G 6 6
14 Madagascar 12700 T 6 6
15 Madagascar 12701 C 6 6
16 Madagascar 12702 C 6 6
17 Madagascar 12703 T 6 6
18 Madagascar 12704 G 6 6
19 Madagascar 12705 T 6 6
20 Madagascar 12706 T 6 6
21 Madagascar 12707 G 6 6
22 Madagascar 12708 C 6 6
23 Madagascar 12709 A 6 6
24 Madagascar 12710 C 6 6
25 Madagascar 12711 T 6 6
26 Madagascar 12712 A 6 6
27 Madagascar 12713 C 6 6
28 Madagascar 12714 G 6 6
29 Madagascar 12715 A 6 6
30 Madagascar 12716 C 6 6
31 Madagascar 12717 A 6 6
32 Madagascar 12718 G 6 6
33 Madagascar 12719 A 6 6
34 Madagascar 12720 T 6 6
35 Madagascar 12721 G 6 6
36 Madagascar 12722 T 6 6
37 Madagascar 12723 C 6 6
38 Madagascar 12724 T 6 6
39 Madagascar 12725 T 6 6
40 Madagascar 12726 G 6 6
41 Madagascar 12727 T 6 6
42 Madagascar 12728 G 6 6
43 Madagascar 12729 C 6 6
44 Madagascar 12730 T 6 6
45 Madagascar 12731 G 6 6
46 Madagascar 12732 C 6 6
47 Madagascar 12733 C 6 6
48 Madagascar 12734 G 6 6
49 Madagascar 12735 G 6 6
50 Madagascar 12736 T 6 6
51 Madagascar 12737 A 6 6
52 Madagascar 12738 C 6 6
53 Madagascar 12739 T 6 6
54 Madagascar 12740 A 6 6
55 Madagascar 12741 C 6 6
56 Madagascar 12742 A 6 6
57 Madagascar 12743 C 6 6
58 Madagascar 12744 A 6 6
59 Madagascar 12745 A 6 6
60 Madagascar 12746 A 6 6
61 Madagascar 12747 C 6 6
62 Madagascar 12748 T 6 6
63 Madagascar 12749 G 6 6
64 Madagascar 12750 C 6 6
65 Madagascar 12751 T 6 6
66 Madagascar 12752 T 6 6
67 Madagascar 12753 G 6 6
68 Madagascar 12754 C 6 6
69 Madagascar 12755 A 6 6
70 Madagascar 12756 C 6 6
71 Madagascar 12757 T 6 6
72 Madagascar 12758 G 6 6
73 Madagascar 12759 A 6 6
74 Madagascar 12760 T 6 6
75 Madagascar 12761 G 6 6
76 Madagascar 12762 A 6 6
77 Madagascar 12763 C 6 6
78 Madagascar 12764 A 6 6
79 Madagascar 12765 A 6 6
80 Madagascar 12766 T 6 6
81 Madagascar 12767 G 6 6
82 Madagascar 12768 C 6 6
83 Madagascar 12769 G 6 6
84 Madagascar 12770 T 6 6
85 Madagascar 12771 T 6 6
86 Madagascar 12772 A 6 6
87 Madagascar 12773 G 6 6
88 Madagascar 12774 C 6 6
89 Madagascar 12775 T 6 6
90 Madagascar 12776 T 6 6
91 Madagascar 12777 A 6 6
92 Madagascar 12778 C 6 6
93 Madagascar 12779 T 6 6
94 Madagascar 12780 A 6 6
95 Madagascar 12781 C 6 6
96 Madagascar 12782 A 6 6
97 Madagascar 12783 A 6 6
98 Madagascar 12784 C 6 6
99 Madagascar 12785 A 6 6
100 Madagascar 12786 C 6 6
101 Madagascar 12787 A 6 6
102 Madagascar 12788 A 6 6
103 Madagascar 12789 C 6 6
104 Madagascar 12790 A 6 6
105 Madagascar 12791 A 6 6
106 Madagascar 12792 A 6 6
107 Madagascar 12793 G 6 6
108 Madagascar 12794 G 6 6
109 Madagascar 12795 G 6 6
110 Madagascar 12796 A 6 6
111 Madagascar 12797 G 6 6
112 Madagascar 12798 G 6 6
113 Madagascar 12799 T 6 6
114 Madagascar 12800 A 6 6
115 Madagascar 12801 G 6 6
116 Madagascar 12802 G 6 6
117 Madagascar 12803 T 6 6
118 Madagascar 12804 T 6 6
119 Madagascar 12805 T 6 6
120 Madagascar 12806 G 6 6
121 Madagascar 12807 T 6 6
122 Madagascar 12808 A 6 6
123 Madagascar 12809 C 6 6
124 Madagascar 12810 T 6 6
125 Madagascar 12811 T 6 6
126 Madagascar 12812 G 6 6
127 Madagascar 12813 C 6 6
128 Madagascar 12814 A 6 6
129 Madagascar 12815 C 6 6
130 Madagascar 12816 T 6 6
131 Madagascar 12817 G 6 6
132 Madagascar 12818 T 6 6
133 Madagascar 12819 T 6 6
134 Madagascar 12820 A 6 6
135 Madagascar 12821 T 6 6
136 Madagascar 12822 C 6 6
137 Madagascar 12823 C 6 6
138 Madagascar 12824 G 6 6
139 Madagascar 12825 A 6 6
140 Madagascar 12826 T 6 6
141 Madagascar 12827 T 6 6
142 Madagascar 12828 T 6 6
143 Madagascar 12829 A 6 6
144 Madagascar 12830 C 6 6
145 Madagascar 12831 A 6 6
146 Madagascar 12832 G 6 6
147 Madagascar 12833 G 6 6
148 Madagascar 12834 A 6 6
149 Madagascar 12835 T 6 6
150 Madagascar 12836 T 6 6
151 Madagascar 12837 T 6 6
152 Madagascar 12838 G 6 6
153 Madagascar 12839 A 6 6
154 Madagascar 12840 A 6 6
155 Madagascar 12841 A 6 6
156 Madagascar 12842 T 6 6
157 Madagascar 12843 G 6 6
158 Madagascar 12844 G 6 6
159 Madagascar 12845 G 6 6
160 Madagascar 12846 C 6 6
161 Madagascar 12847 T 6 6
162 Madagascar 12848 A 6 6
163 Madagascar 12849 G 6 6
164 Madagascar 12850 A 6 6
165 Madagascar 12851 T 6 6
166 Madagascar 12852 T 6 6
167 Madagascar 12853 C 6 6
168 Madagascar 12854 C 6 6
169 Madagascar 12855 C 6 6
170 Madagascar 12856 T 6 6
171 Madagascar 12857 A 6 6
172 Madagascar 12858 A 6 6
173 Madagascar 12859 G 6 6
174 Madagascar 12860 A 6 6
175 Madagascar 12861 G 6 6
176 Madagascar 12862 T 6 6
177 Madagascar 12863 G 6 6
178 Madagascar 12864 A 6 6
179 Madagascar 12865 T 6 6
180 Madagascar 12866 G 6 6
181 Madagascar 12867 G 6 6
182 Madagascar 12868 A 6 6
183 Madagascar 12869 A 6 6
184 Madagascar 12870 C 6 6
185 Madagascar 12871 T 6 6
186 Madagascar 12872 G 6 6
187 Madagascar 12873 G 6 6
188 Madagascar 12874 T 6 6
189 Madagascar 12875 A 6 6
190 Madagascar 12876 C 6 6
191 Madagascar 12877 T 6 6
192 Madagascar 12878 A 6 6
193 Madagascar 12879 T 6 6
194 Madagascar 12880 C 6 6
195 Madagascar 12881 T 6 6
196 Madagascar 12882 A 6 6
197 Madagascar 12883 T 6 6
198 Madagascar 12884 A 6 6
199 Madagascar 12885 C 6 6
200 Madagascar 12886 A 6 6
201 Madagascar 12887 G 6 6
202 Madagascar 12888 A 6 6
203 Madagascar 12889 A 6 6
204 Madagascar 12890 C 6 6
205 Madagascar 12891 T 6 6
206 Madagascar 12892 G 6 6
207 Madagascar 12893 G 6 6
208 Madagascar 12894 A 6 6
209 Madagascar 12895 A 6 6
210 Madagascar 12896 C 6 6
211 Madagascar 12897 C 6 6
212 Madagascar 12898 A 6 6
213 Madagascar 12899 C 6 6
214 Madagascar 12900 C 6 6
215 Madagascar 12901 T 6 6
216 Madagascar 12902 T 6 6
217 Madagascar 12903 G 6 6
218 Madagascar 12904 T 6 6
219 Madagascar 12905 A 6 6
220 Madagascar 12906 G 6 6
221 Madagascar 12907 G 6 6
222 Madagascar 12908 T 6 6
223 Madagascar 12909 T 6 6
224 Madagascar 12910 T 6 6
225 Madagascar 12911 G 6 6
226 Madagascar 12912 T 6 6
227 Madagascar 12913 T 6 6
228 Madagascar 12914 A 6 6
229 Madagascar 12915 C 6 6
230 Madagascar 12916 A 6 6
231 Madagascar 12917 G 6 6
232 Madagascar 12918 A 6 6
233 Madagascar 12919 C 6 6
234 Madagascar 12920 A 6 6
235 Madagascar 12921 C 6 6
236 Madagascar 12922 A 6 6
237 Madagascar 12923 C 6 6
238 Madagascar 12924 C 6 6
239 Madagascar 12925 T 6 6
240 Madagascar 12926 A 6 6
241 Madagascar 12927 A 6 6
242 Madagascar 12928 A 6 6
243 Madagascar 12929 G 6 6
244 Madagascar 12930 G 6 6
245 Madagascar 12931 T 6 6
246 Madagascar 12932 C 6 6
247 Madagascar 12933 C 6 6
248 Madagascar 12934 T 6 6
249 Madagascar 12935 A 6 6
250 Madagascar 12936 A 6 6
251 Madagascar 12937 A 6 6
252 Madagascar 12938 G 6 6
253 Madagascar 12939 T 6 6
254 Madagascar 12940 G 6 6
255 Madagascar 12941 A 6 6
256 Madagascar 12942 A 6 6
257 Madagascar 12943 G 6 6
258 Madagascar 12944 T 6 6
259 Madagascar 12945 A 6 6
260 Madagascar 12946 T 6 6
261 Madagascar 12947 T 6 6
262 Madagascar 12948 T 6 6
263 Madagascar 12949 A 6 6
264 Madagascar 12950 T 6 6
265 Madagascar 12951 A 6 6
266 Madagascar 12952 C 6 6
267 Madagascar 12953 T 6 6
268 Madagascar 12954 T 6 6
269 Madagascar 12955 T 6 6
270 Madagascar 12956 A 6 6
271 Madagascar 12957 T 6 6
272 Madagascar 12958 T 6 6
273 Madagascar 12959 A 6 6
274 Madagascar 12960 A 6 6
275 Madagascar 12961 A 6 6
276 Madagascar 12962 G 6 6
277 Madagascar 12963 G 6 6
278 Madagascar 12964 A 6 6
279 Madagascar 12965 T 6 6
280 Madagascar 12966 T 6 6
281 Madagascar 12967 A 6 6
282 Madagascar 12968 A 6 6
283 Madagascar 12969 A 6 6
284 Madagascar 12970 C 6 6
285 Madagascar 12971 A 6 6
286 Madagascar 12972 A 6 6
287 Madagascar 12973 C 6 6
288 Madagascar 12974 C 6 6
289 Madagascar 12975 T 6 6
290 Madagascar 12976 A 6 6
291 Madagascar 12977 A 6 6
292 Madagascar 12978 A 6 6
293 Madagascar 12979 T 6 6
294 Madagascar 12980 A 6 6
295 Madagascar 12981 G 6 6
296 Madagascar 12982 A 6 6
297 Madagascar 12983 G 6 6
298 Madagascar 12984 G 6 6
299 Madagascar 12985 T 6 6
300 Madagascar 12986 A 6 6
301 Madagascar 12987 T 6 6
302 Madagascar 12988 G 6 6
303 Madagascar 12989 G 6 6
304 Madagascar 12990 T 6 6
305 Madagascar 12991 A 6 6
306 Madagascar 12992 C 6 6
307 Madagascar 12993 T 6 6
308 Madagascar 12994 T 6 6
309 Madagascar 12995 G 6 6
310 Madagascar 12996 G 6 6
311 Madagascar 12997 T 6 6
312 Madagascar 12998 A 6 6
313 Madagascar 12999 G 6 6
314 Madagascar 13000 T 6 6
315 Madagascar 13001 T 6 6
316 Madagascar 13002 T 6 6
317 Madagascar 13003 A 6 6
318 Madagascar 13004 G 6 6
319 Madagascar 13005 C 6 6
320 Madagascar 13006 T 6 6
321 Madagascar 13007 G 6 6
322 Madagascar 13008 C 6 6
323 Madagascar 13009 C 6 6
324 Madagascar 13010 A 6 6
325 Madagascar 13011 C 6 6
326 Madagascar 13012 A 6 6
327 Madagascar 13013 G 6 6
328 Madagascar 13014 T 6 6
329 Madagascar 13015 A 6 6
330 Madagascar 13016 C 6 6
331 Madagascar 13017 G 6 6
332 Madagascar 13018 T 6 6
333 Madagascar 13019 C 6 6
334 Madagascar 13020 T 6 6
335 Madagascar 13021 A 6 6
336 Madagascar 13022 C 6 6
337 Madagascar 13023 A 6 6
338 Madagascar 13024 A 6 6