National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27       1                              
I   6                                      
K   21                                      
L   45                                      
M   6             1                        
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                       1              
V   18                                 1    
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Lithuania 12686 A 234 234
1 Lithuania 12687 A 234 234
2 Lithuania 12688 T 234 234
3 Lithuania 12689 A 234 234
4 Lithuania 12690 A 234 234
5 Lithuania 12691 T 234 234
6 Lithuania 12692 G 234 234
7 Lithuania 12693 A 234 234
8 Lithuania 12694 G 234 234
9 Lithuania 12695 C 234 234
10 Lithuania 12696 T 234 234
11 Lithuania 12697 T 234 234
12 Lithuania 12698 A 234 234
13 Lithuania 12699 G 234 234
14 Lithuania 12700 T 235 235
15 Lithuania 12701 C 235 235
16 Lithuania 12702 C 235 235
17 Lithuania 12703 T 235 235
18 Lithuania 12704 G 235 235
19 Lithuania 12705 T 235 235
20 Lithuania 12706 T 235 235
21 Lithuania 12707 G 235 235
22 Lithuania 12708 C 235 235
23 Lithuania 12709 A 235 235
24 Lithuania 12710 C 235 235
25 Lithuania 12711 T 235 235
26 Lithuania 12712 A 235 235
27 Lithuania 12713 C 235 235
28 Lithuania 12714 G 235 235
29 Lithuania 12715 A 235 235
30 Lithuania 12716 C 235 235
31 Lithuania 12717 A 235 235
32 Lithuania 12718 G 235 235
33 Lithuania 12719 A 235 235
34 Lithuania 12720 T 235 235
35 Lithuania 12721 G 235 235
36 Lithuania 12722 T 235 235
37 Lithuania 12723 C 235 235
38 Lithuania 12724 T 235 235
39 Lithuania 12725 T 235 235
40 Lithuania 12726 G 235 235
41 Lithuania 12727 T 235 235
42 Lithuania 12728 G 235 235
43 Lithuania 12729 C 235 235
44 Lithuania 12730 T 235 235
45 Lithuania 12731 G 235 235
46 Lithuania 12732 C 235 235
47 Lithuania 12733 C 235 235
48 Lithuania 12734 G 235 235
49 Lithuania 12735 G 235 235
50 Lithuania 12736 T 235 235
51 Lithuania 12737 A 235 235
52 Lithuania 12738 C 235 235
53 Lithuania 12739 T 235 235
54 Lithuania 12740 A 235 235
55 Lithuania 12741 C 235 235
56 Lithuania 12742 A 235 235
57 Lithuania 12743 C 235 235
58 Lithuania 12744 A 235 235
59 Lithuania 12745 A 235 235
60 Lithuania 12746 A 235 235
61 Lithuania 12747 C 235 235
62 Lithuania 12748 T 235 235
63 Lithuania 12749 G 235 235
64 Lithuania 12750 C 235 235
65 Lithuania 12751 T 235 235
66 Lithuania 12752 T 235 235
67 Lithuania 12753 G 235 235
68 Lithuania 12754 C 235 235
69 Lithuania 12755 A C 235 234 Thr4164Pro
70 Lithuania 12756 C 235 235
71 Lithuania 12757 T 235 235
72 Lithuania 12758 G 235 235
73 Lithuania 12759 A 235 235
74 Lithuania 12760 T 235 235
75 Lithuania 12761 G 235 235
76 Lithuania 12762 A 235 235
77 Lithuania 12763 C 235 235
78 Lithuania 12764 A 235 235
79 Lithuania 12765 A 235 235
80 Lithuania 12766 T 235 235
81 Lithuania 12767 G 235 235
82 Lithuania 12768 C 235 235
83 Lithuania 12769 G 235 235
84 Lithuania 12770 T 235 235
85 Lithuania 12771 T 235 235
86 Lithuania 12772 A 235 235
87 Lithuania 12773 G 235 235
88 Lithuania 12774 C 235 235
89 Lithuania 12775 T 235 235
90 Lithuania 12776 T 235 235
91 Lithuania 12777 A 235 235
92 Lithuania 12778 C 235 235
93 Lithuania 12779 T 235 235
94 Lithuania 12780 A 235 235
95 Lithuania 12781 C 235 235
96 Lithuania 12782 A 235 235
97 Lithuania 12783 A 235 235
98 Lithuania 12784 C 235 235
99 Lithuania 12785 A 235 235
100 Lithuania 12786 C 235 235
101 Lithuania 12787 A 235 235
102 Lithuania 12788 A 235 235
103 Lithuania 12789 C 235 235
104 Lithuania 12790 A 235 235
105 Lithuania 12791 A 235 235
106 Lithuania 12792 A 235 235
107 Lithuania 12793 G 235 235
108 Lithuania 12794 G 235 235
109 Lithuania 12795 G A 235 232 Gly4177Glu
110 Lithuania 12796 A 235 235
111 Lithuania 12797 G 235 235
112 Lithuania 12798 G 235 235
113 Lithuania 12799 T 235 235
114 Lithuania 12800 A 234 234
115 Lithuania 12801 G 234 234
116 Lithuania 12802 G 234 234
117 Lithuania 12803 T 234 234
118 Lithuania 12804 T 234 234
119 Lithuania 12805 T 234 234
120 Lithuania 12806 G 234 234
121 Lithuania 12807 T 234 234
122 Lithuania 12808 A 234 234
123 Lithuania 12809 C 234 234
124 Lithuania 12810 T 234 234
125 Lithuania 12811 T 234 234
126 Lithuania 12812 G 234 234
127 Lithuania 12813 C 234 234
128 Lithuania 12814 A 234 234
129 Lithuania 12815 C 234 234
130 Lithuania 12816 T 234 234
131 Lithuania 12817 G 234 234
132 Lithuania 12818 T 234 234
133 Lithuania 12819 T 234 234
134 Lithuania 12820 A 234 234
135 Lithuania 12821 T 234 234
136 Lithuania 12822 C 234 234
137 Lithuania 12823 C 234 234
138 Lithuania 12824 G 234 234
139 Lithuania 12825 A 234 234
140 Lithuania 12826 T 234 234
141 Lithuania 12827 T 234 234
142 Lithuania 12828 T 234 234
143 Lithuania 12829 A 234 234
144 Lithuania 12830 C 234 234
145 Lithuania 12831 A 234 234
146 Lithuania 12832 G 234 234
147 Lithuania 12833 G 234 234
148 Lithuania 12834 A 234 234
149 Lithuania 12835 T 234 234
150 Lithuania 12836 T 234 234
151 Lithuania 12837 T 234 234
152 Lithuania 12838 G 234 234
153 Lithuania 12839 A 234 234
154 Lithuania 12840 A 234 234
155 Lithuania 12841 A 234 234
156 Lithuania 12842 T 234 234
157 Lithuania 12843 G 234 234
158 Lithuania 12844 G 234 234
159 Lithuania 12845 G 234 234
160 Lithuania 12846 C 234 234
161 Lithuania 12847 T 234 234
162 Lithuania 12848 A 234 234
163 Lithuania 12849 G 234 234
164 Lithuania 12850 A 234 234
165 Lithuania 12851 T 234 234
166 Lithuania 12852 T 234 234
167 Lithuania 12853 C 234 234
168 Lithuania 12854 C 234 234
169 Lithuania 12855 C 234 234
170 Lithuania 12856 T 234 234
171 Lithuania 12857 A 234 234
172 Lithuania 12858 A 234 234
173 Lithuania 12859 G 234 234
174 Lithuania 12860 A 234 234
175 Lithuania 12861 G 234 234
176 Lithuania 12862 T 234 234
177 Lithuania 12863 G 234 234
178 Lithuania 12864 A 234 234
179 Lithuania 12865 T 234 234
180 Lithuania 12866 G 234 234
181 Lithuania 12867 G 234 234
182 Lithuania 12868 A 234 234
183 Lithuania 12869 A 234 234
184 Lithuania 12870 C 234 234
185 Lithuania 12871 T 234 234
186 Lithuania 12872 G 234 234
187 Lithuania 12873 G 234 234
188 Lithuania 12874 T 234 234
189 Lithuania 12875 A 234 234
190 Lithuania 12876 C 234 234
191 Lithuania 12877 T 234 234
192 Lithuania 12878 A 234 234
193 Lithuania 12879 T 234 234
194 Lithuania 12880 C 234 234
195 Lithuania 12881 T 234 234
196 Lithuania 12882 A 234 234
197 Lithuania 12883 T 234 234
198 Lithuania 12884 A 234 234
199 Lithuania 12885 C 234 234
200 Lithuania 12886 A 234 234
201 Lithuania 12887 G 234 234
202 Lithuania 12888 A 234 234
203 Lithuania 12889 A 234 234
204 Lithuania 12890 C 234 234
205 Lithuania 12891 T 234 234
206 Lithuania 12892 G 234 234
207 Lithuania 12893 G 234 234
208 Lithuania 12894 A 234 234
209 Lithuania 12895 A 234 234
210 Lithuania 12896 C 234 234
211 Lithuania 12897 C 234 234
212 Lithuania 12898 A 234 234
213 Lithuania 12899 C 234 234
214 Lithuania 12900 C 234 234
215 Lithuania 12901 T 234 234
216 Lithuania 12902 T 234 234
217 Lithuania 12903 G 234 234
218 Lithuania 12904 T 234 234
219 Lithuania 12905 A 234 234
220 Lithuania 12906 G 234 234
221 Lithuania 12907 G 234 234
222 Lithuania 12908 T 234 234
223 Lithuania 12909 T 234 234
224 Lithuania 12910 T 234 234
225 Lithuania 12911 G 234 234
226 Lithuania 12912 T 234 234
227 Lithuania 12913 T 234 234
228 Lithuania 12914 A 234 234
229 Lithuania 12915 C 234 234
230 Lithuania 12916 A 234 234
231 Lithuania 12917 G 234 234
232 Lithuania 12918 A 234 234
233 Lithuania 12919 C 234 234
234 Lithuania 12920 A 234 234
235 Lithuania 12921 C 234 234
236 Lithuania 12922 A 234 234
237 Lithuania 12923 C 234 234
238 Lithuania 12924 C 234 234
239 Lithuania 12925 T 234 234
240 Lithuania 12926 A 234 234
241 Lithuania 12927 A 234 234
242 Lithuania 12928 A 234 234
243 Lithuania 12929 G 234 234
244 Lithuania 12930 G 234 234
245 Lithuania 12931 T 234 234
246 Lithuania 12932 C 234 234
247 Lithuania 12933 C 234 234
248 Lithuania 12934 T 234 234
249 Lithuania 12935 A 234 234
250 Lithuania 12936 A 234 234
251 Lithuania 12937 A 234 234
252 Lithuania 12938 G 234 234
253 Lithuania 12939 T 234 234
254 Lithuania 12940 G T 234 232 Val4225Val
255 Lithuania 12941 A 234 234
256 Lithuania 12942 A 234 234
257 Lithuania 12943 G 234 234
258 Lithuania 12944 T 234 234
259 Lithuania 12945 A 234 234
260 Lithuania 12946 T 234 234
261 Lithuania 12947 T 234 234
262 Lithuania 12948 T 234 234
263 Lithuania 12949 A 234 234
264 Lithuania 12950 T 234 234
265 Lithuania 12951 A 234 234
266 Lithuania 12952 C 234 234
267 Lithuania 12953 T 234 234
268 Lithuania 12954 T 234 234
269 Lithuania 12955 T 234 234
270 Lithuania 12956 A 234 234
271 Lithuania 12957 T 234 234
272 Lithuania 12958 T 234 234
273 Lithuania 12959 A 234 234
274 Lithuania 12960 A 234 234
275 Lithuania 12961 A 234 234
276 Lithuania 12962 G 234 234
277 Lithuania 12963 G 234 234
278 Lithuania 12964 A 234 234
279 Lithuania 12965 T 234 234
280 Lithuania 12966 T 234 234
281 Lithuania 12967 A 234 234
282 Lithuania 12968 A 234 234
283 Lithuania 12969 A 234 234
284 Lithuania 12970 C 234 234
285 Lithuania 12971 A 234 234
286 Lithuania 12972 A 234 234
287 Lithuania 12973 C 234 234
288 Lithuania 12974 C 234 234
289 Lithuania 12975 T 234 234
290 Lithuania 12976 A 234 234
291 Lithuania 12977 A 234 234
292 Lithuania 12978 A 234 234
293 Lithuania 12979 T 234 234
294 Lithuania 12980 A 234 234
295 Lithuania 12981 G 234 234
296 Lithuania 12982 A 234 234
297 Lithuania 12983 G 234 234
298 Lithuania 12984 G 234 234
299 Lithuania 12985 T 234 234
300 Lithuania 12986 A 234 234
301 Lithuania 12987 T 234 234
302 Lithuania 12988 G A 234 233 Met4241Ile
303 Lithuania 12989 G 234 234
304 Lithuania 12990 T 234 234
305 Lithuania 12991 A 234 234
306 Lithuania 12992 C 234 234
307 Lithuania 12993 T 234 234
308 Lithuania 12994 T 234 234
309 Lithuania 12995 G 234 234
310 Lithuania 12996 G 234 234
311 Lithuania 12997 T 234 234
312 Lithuania 12998 A 234 234
313 Lithuania 12999 G 234 234
314 Lithuania 13000 T 234 234
315 Lithuania 13001 T 234 234
316 Lithuania 13002 T 234 234
317 Lithuania 13003 A 234 234
318 Lithuania 13004 G 234 234
319 Lithuania 13005 C 234 234
320 Lithuania 13006 T 234 234
321 Lithuania 13007 G 234 234
322 Lithuania 13008 C 234 234
323 Lithuania 13009 C 234 234
324 Lithuania 13010 A 234 234
325 Lithuania 13011 C 234 234
326 Lithuania 13012 A 234 234
327 Lithuania 13013 G 234 234
328 Lithuania 13014 T 234 234
329 Lithuania 13015 A 234 234
330 Lithuania 13016 C 234 234
331 Lithuania 13017 G 234 234
332 Lithuania 13018 T 234 234
333 Lithuania 13019 C 234 234
334 Lithuania 13020 T 234 234
335 Lithuania 13021 A 234 234
336 Lithuania 13022 C 234 234
337 Lithuania 13023 A 234 234
338 Lithuania 13024 A 234 234