National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Liechtenstein 12686 A 3 3
1 Liechtenstein 12687 A 3 3
2 Liechtenstein 12688 T 3 3
3 Liechtenstein 12689 A 3 3
4 Liechtenstein 12690 A 3 3
5 Liechtenstein 12691 T 3 3
6 Liechtenstein 12692 G 3 3
7 Liechtenstein 12693 A 3 3
8 Liechtenstein 12694 G 3 3
9 Liechtenstein 12695 C 3 3
10 Liechtenstein 12696 T 3 3
11 Liechtenstein 12697 T 3 3
12 Liechtenstein 12698 A 3 3
13 Liechtenstein 12699 G 3 3
14 Liechtenstein 12700 T 3 3
15 Liechtenstein 12701 C 3 3
16 Liechtenstein 12702 C 3 3
17 Liechtenstein 12703 T 3 3
18 Liechtenstein 12704 G 3 3
19 Liechtenstein 12705 T 3 3
20 Liechtenstein 12706 T 3 3
21 Liechtenstein 12707 G 3 3
22 Liechtenstein 12708 C 3 3
23 Liechtenstein 12709 A 3 3
24 Liechtenstein 12710 C 3 3
25 Liechtenstein 12711 T 3 3
26 Liechtenstein 12712 A 3 3
27 Liechtenstein 12713 C 3 3
28 Liechtenstein 12714 G 3 3
29 Liechtenstein 12715 A 3 3
30 Liechtenstein 12716 C 3 3
31 Liechtenstein 12717 A 3 3
32 Liechtenstein 12718 G 3 3
33 Liechtenstein 12719 A 3 3
34 Liechtenstein 12720 T 3 3
35 Liechtenstein 12721 G 3 3
36 Liechtenstein 12722 T 3 3
37 Liechtenstein 12723 C 3 3
38 Liechtenstein 12724 T 3 3
39 Liechtenstein 12725 T 3 3
40 Liechtenstein 12726 G 3 3
41 Liechtenstein 12727 T 3 3
42 Liechtenstein 12728 G 3 3
43 Liechtenstein 12729 C 3 3
44 Liechtenstein 12730 T 3 3
45 Liechtenstein 12731 G 3 3
46 Liechtenstein 12732 C 3 3
47 Liechtenstein 12733 C 3 3
48 Liechtenstein 12734 G 3 3
49 Liechtenstein 12735 G 3 3
50 Liechtenstein 12736 T 3 3
51 Liechtenstein 12737 A 3 3
52 Liechtenstein 12738 C 3 3
53 Liechtenstein 12739 T 3 3
54 Liechtenstein 12740 A 3 3
55 Liechtenstein 12741 C 3 3
56 Liechtenstein 12742 A 3 3
57 Liechtenstein 12743 C 3 3
58 Liechtenstein 12744 A 3 3
59 Liechtenstein 12745 A 3 3
60 Liechtenstein 12746 A 3 3
61 Liechtenstein 12747 C 3 3
62 Liechtenstein 12748 T 3 3
63 Liechtenstein 12749 G 3 3
64 Liechtenstein 12750 C 3 3
65 Liechtenstein 12751 T 3 3
66 Liechtenstein 12752 T 3 3
67 Liechtenstein 12753 G 3 3
68 Liechtenstein 12754 C 3 3
69 Liechtenstein 12755 A 3 3
70 Liechtenstein 12756 C 3 3
71 Liechtenstein 12757 T 3 3
72 Liechtenstein 12758 G 3 3
73 Liechtenstein 12759 A 3 3
74 Liechtenstein 12760 T 3 3
75 Liechtenstein 12761 G 3 3
76 Liechtenstein 12762 A 3 3
77 Liechtenstein 12763 C 3 3
78 Liechtenstein 12764 A 3 3
79 Liechtenstein 12765 A 3 3
80 Liechtenstein 12766 T 3 3
81 Liechtenstein 12767 G 3 3
82 Liechtenstein 12768 C 3 3
83 Liechtenstein 12769 G 3 3
84 Liechtenstein 12770 T 3 3
85 Liechtenstein 12771 T 3 3
86 Liechtenstein 12772 A 3 3
87 Liechtenstein 12773 G 3 3
88 Liechtenstein 12774 C 3 3
89 Liechtenstein 12775 T 3 3
90 Liechtenstein 12776 T 3 3
91 Liechtenstein 12777 A 3 3
92 Liechtenstein 12778 C 3 3
93 Liechtenstein 12779 T 3 3
94 Liechtenstein 12780 A 3 3
95 Liechtenstein 12781 C 3 3
96 Liechtenstein 12782 A 3 3
97 Liechtenstein 12783 A 3 3
98 Liechtenstein 12784 C 3 3
99 Liechtenstein 12785 A 3 3
100 Liechtenstein 12786 C 3 3
101 Liechtenstein 12787 A 3 3
102 Liechtenstein 12788 A 3 3
103 Liechtenstein 12789 C 3 3
104 Liechtenstein 12790 A 3 3
105 Liechtenstein 12791 A 3 3
106 Liechtenstein 12792 A 3 3
107 Liechtenstein 12793 G 3 3
108 Liechtenstein 12794 G 3 3
109 Liechtenstein 12795 G 3 3
110 Liechtenstein 12796 A 3 3
111 Liechtenstein 12797 G 3 3
112 Liechtenstein 12798 G 3 3
113 Liechtenstein 12799 T 3 3
114 Liechtenstein 12800 A 3 3
115 Liechtenstein 12801 G 3 3
116 Liechtenstein 12802 G 3 3
117 Liechtenstein 12803 T 3 3
118 Liechtenstein 12804 T 3 3
119 Liechtenstein 12805 T 3 3
120 Liechtenstein 12806 G 3 3
121 Liechtenstein 12807 T 3 3
122 Liechtenstein 12808 A 3 3
123 Liechtenstein 12809 C 3 3
124 Liechtenstein 12810 T 3 3
125 Liechtenstein 12811 T 3 3
126 Liechtenstein 12812 G 3 3
127 Liechtenstein 12813 C 3 3
128 Liechtenstein 12814 A 3 3
129 Liechtenstein 12815 C 3 3
130 Liechtenstein 12816 T 3 3
131 Liechtenstein 12817 G 3 3
132 Liechtenstein 12818 T 3 3
133 Liechtenstein 12819 T 3 3
134 Liechtenstein 12820 A 3 3
135 Liechtenstein 12821 T 3 3
136 Liechtenstein 12822 C 3 3
137 Liechtenstein 12823 C 3 3
138 Liechtenstein 12824 G 3 3
139 Liechtenstein 12825 A 3 3
140 Liechtenstein 12826 T 3 3
141 Liechtenstein 12827 T 3 3
142 Liechtenstein 12828 T 3 3
143 Liechtenstein 12829 A 3 3
144 Liechtenstein 12830 C 3 3
145 Liechtenstein 12831 A 3 3
146 Liechtenstein 12832 G 3 3
147 Liechtenstein 12833 G 3 3
148 Liechtenstein 12834 A 3 3
149 Liechtenstein 12835 T 3 3
150 Liechtenstein 12836 T 3 3
151 Liechtenstein 12837 T 3 3
152 Liechtenstein 12838 G 3 3
153 Liechtenstein 12839 A 3 3
154 Liechtenstein 12840 A 3 3
155 Liechtenstein 12841 A 3 3
156 Liechtenstein 12842 T 3 3
157 Liechtenstein 12843 G 3 3
158 Liechtenstein 12844 G 3 3
159 Liechtenstein 12845 G 3 3
160 Liechtenstein 12846 C 3 3
161 Liechtenstein 12847 T 3 3
162 Liechtenstein 12848 A 3 3
163 Liechtenstein 12849 G 3 3
164 Liechtenstein 12850 A 3 3
165 Liechtenstein 12851 T 3 3
166 Liechtenstein 12852 T 3 3
167 Liechtenstein 12853 C 3 3
168 Liechtenstein 12854 C 3 3
169 Liechtenstein 12855 C 3 3
170 Liechtenstein 12856 T 3 3
171 Liechtenstein 12857 A 3 3
172 Liechtenstein 12858 A 3 3
173 Liechtenstein 12859 G 3 3
174 Liechtenstein 12860 A 3 3
175 Liechtenstein 12861 G 3 3
176 Liechtenstein 12862 T 3 3
177 Liechtenstein 12863 G 3 3
178 Liechtenstein 12864 A 3 3
179 Liechtenstein 12865 T 3 3
180 Liechtenstein 12866 G 3 3
181 Liechtenstein 12867 G 3 3
182 Liechtenstein 12868 A 3 3
183 Liechtenstein 12869 A 3 3
184 Liechtenstein 12870 C 3 3
185 Liechtenstein 12871 T 3 3
186 Liechtenstein 12872 G 3 3
187 Liechtenstein 12873 G 3 3
188 Liechtenstein 12874 T 3 3
189 Liechtenstein 12875 A 3 3
190 Liechtenstein 12876 C 3 3
191 Liechtenstein 12877 T 3 3
192 Liechtenstein 12878 A 3 3
193 Liechtenstein 12879 T 3 3
194 Liechtenstein 12880 C 3 3
195 Liechtenstein 12881 T 3 3
196 Liechtenstein 12882 A 3 3
197 Liechtenstein 12883 T 3 3
198 Liechtenstein 12884 A 3 3
199 Liechtenstein 12885 C 3 3
200 Liechtenstein 12886 A 3 3
201 Liechtenstein 12887 G 3 3
202 Liechtenstein 12888 A 3 3
203 Liechtenstein 12889 A 3 3
204 Liechtenstein 12890 C 3 3
205 Liechtenstein 12891 T 3 3
206 Liechtenstein 12892 G 3 3
207 Liechtenstein 12893 G 3 3
208 Liechtenstein 12894 A 3 3
209 Liechtenstein 12895 A 3 3
210 Liechtenstein 12896 C 3 3
211 Liechtenstein 12897 C 3 3
212 Liechtenstein 12898 A 3 3
213 Liechtenstein 12899 C 3 3
214 Liechtenstein 12900 C 3 3
215 Liechtenstein 12901 T 3 3
216 Liechtenstein 12902 T 3 3
217 Liechtenstein 12903 G 3 3
218 Liechtenstein 12904 T 3 3
219 Liechtenstein 12905 A 3 3
220 Liechtenstein 12906 G 3 3
221 Liechtenstein 12907 G 3 3
222 Liechtenstein 12908 T 3 3
223 Liechtenstein 12909 T 3 3
224 Liechtenstein 12910 T 3 3
225 Liechtenstein 12911 G 3 3
226 Liechtenstein 12912 T 3 3
227 Liechtenstein 12913 T 3 3
228 Liechtenstein 12914 A 3 3
229 Liechtenstein 12915 C 3 3
230 Liechtenstein 12916 A 3 3
231 Liechtenstein 12917 G 3 3
232 Liechtenstein 12918 A 3 3
233 Liechtenstein 12919 C 3 3
234 Liechtenstein 12920 A 3 3
235 Liechtenstein 12921 C 3 3
236 Liechtenstein 12922 A 3 3
237 Liechtenstein 12923 C 3 3
238 Liechtenstein 12924 C 3 3
239 Liechtenstein 12925 T 3 3
240 Liechtenstein 12926 A 3 3
241 Liechtenstein 12927 A 3 3
242 Liechtenstein 12928 A 3 3
243 Liechtenstein 12929 G 3 3
244 Liechtenstein 12930 G 3 3
245 Liechtenstein 12931 T 3 3
246 Liechtenstein 12932 C 3 3
247 Liechtenstein 12933 C 3 3
248 Liechtenstein 12934 T 3 3
249 Liechtenstein 12935 A 3 3
250 Liechtenstein 12936 A 3 3
251 Liechtenstein 12937 A 3 3
252 Liechtenstein 12938 G 3 3
253 Liechtenstein 12939 T 3 3
254 Liechtenstein 12940 G 3 3
255 Liechtenstein 12941 A 3 3
256 Liechtenstein 12942 A 3 3
257 Liechtenstein 12943 G 3 3
258 Liechtenstein 12944 T 3 3
259 Liechtenstein 12945 A 3 3
260 Liechtenstein 12946 T 3 3
261 Liechtenstein 12947 T 3 3
262 Liechtenstein 12948 T 3 3
263 Liechtenstein 12949 A 3 3
264 Liechtenstein 12950 T 3 3
265 Liechtenstein 12951 A 3 3
266 Liechtenstein 12952 C 3 3
267 Liechtenstein 12953 T 3 3
268 Liechtenstein 12954 T 3 3
269 Liechtenstein 12955 T 3 3
270 Liechtenstein 12956 A 3 3
271 Liechtenstein 12957 T 3 3
272 Liechtenstein 12958 T 3 3
273 Liechtenstein 12959 A 3 3
274 Liechtenstein 12960 A 3 3
275 Liechtenstein 12961 A 3 3
276 Liechtenstein 12962 G 3 3
277 Liechtenstein 12963 G 3 3
278 Liechtenstein 12964 A 3 3
279 Liechtenstein 12965 T 3 3
280 Liechtenstein 12966 T 3 3
281 Liechtenstein 12967 A 3 3
282 Liechtenstein 12968 A 3 3
283 Liechtenstein 12969 A 3 3
284 Liechtenstein 12970 C 3 3
285 Liechtenstein 12971 A 3 3
286 Liechtenstein 12972 A 3 3
287 Liechtenstein 12973 C 3 3
288 Liechtenstein 12974 C 3 3
289 Liechtenstein 12975 T 3 3
290 Liechtenstein 12976 A 3 3
291 Liechtenstein 12977 A 3 3
292 Liechtenstein 12978 A 3 3
293 Liechtenstein 12979 T 3 3
294 Liechtenstein 12980 A 3 3
295 Liechtenstein 12981 G 3 3
296 Liechtenstein 12982 A 3 3
297 Liechtenstein 12983 G 3 3
298 Liechtenstein 12984 G 3 3
299 Liechtenstein 12985 T 3 3
300 Liechtenstein 12986 A 3 3
301 Liechtenstein 12987 T 3 3
302 Liechtenstein 12988 G 3 3
303 Liechtenstein 12989 G 3 3
304 Liechtenstein 12990 T 3 3
305 Liechtenstein 12991 A 3 3
306 Liechtenstein 12992 C 3 3
307 Liechtenstein 12993 T 3 3
308 Liechtenstein 12994 T 3 3
309 Liechtenstein 12995 G 3 3
310 Liechtenstein 12996 G 3 3
311 Liechtenstein 12997 T 3 3
312 Liechtenstein 12998 A 3 3
313 Liechtenstein 12999 G 3 3
314 Liechtenstein 13000 T 3 3
315 Liechtenstein 13001 T 3 3
316 Liechtenstein 13002 T 3 3
317 Liechtenstein 13003 A 3 3
318 Liechtenstein 13004 G 3 3
319 Liechtenstein 13005 C 3 3
320 Liechtenstein 13006 T 3 3
321 Liechtenstein 13007 G 3 3
322 Liechtenstein 13008 C 3 3
323 Liechtenstein 13009 C 3 3
324 Liechtenstein 13010 A 3 3
325 Liechtenstein 13011 C 3 3
326 Liechtenstein 13012 A 3 3
327 Liechtenstein 13013 G 3 3
328 Liechtenstein 13014 T 3 3
329 Liechtenstein 13015 A 3 3
330 Liechtenstein 13016 C 3 3
331 Liechtenstein 13017 G 3 3
332 Liechtenstein 13018 T 3 3
333 Liechtenstein 13019 C 3 3
334 Liechtenstein 13020 T 3 3
335 Liechtenstein 13021 A 3 3
336 Liechtenstein 13022 C 3 3
337 Liechtenstein 13023 A 3 3
338 Liechtenstein 13024 A 3 3