National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                 1    
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Lebanon 12686 A 22 22
1 Lebanon 12687 A 22 22
2 Lebanon 12688 T 22 22
3 Lebanon 12689 A 22 22
4 Lebanon 12690 A 22 22
5 Lebanon 12691 T 22 22
6 Lebanon 12692 G 22 22
7 Lebanon 12693 A 22 22
8 Lebanon 12694 G 22 22
9 Lebanon 12695 C 22 22
10 Lebanon 12696 T 22 22
11 Lebanon 12697 T 22 22
12 Lebanon 12698 A 22 22
13 Lebanon 12699 G 22 22
14 Lebanon 12700 T 22 22
15 Lebanon 12701 C 22 22
16 Lebanon 12702 C 22 22
17 Lebanon 12703 T 22 22
18 Lebanon 12704 G 22 22
19 Lebanon 12705 T 22 22
20 Lebanon 12706 T 22 22
21 Lebanon 12707 G 22 22
22 Lebanon 12708 C 22 22
23 Lebanon 12709 A 22 22
24 Lebanon 12710 C 22 22
25 Lebanon 12711 T 22 22
26 Lebanon 12712 A 22 22
27 Lebanon 12713 C 22 22
28 Lebanon 12714 G 22 22
29 Lebanon 12715 A 22 22
30 Lebanon 12716 C 22 22
31 Lebanon 12717 A 22 22
32 Lebanon 12718 G 22 22
33 Lebanon 12719 A 22 22
34 Lebanon 12720 T 22 22
35 Lebanon 12721 G 22 22
36 Lebanon 12722 T 22 22
37 Lebanon 12723 C 22 22
38 Lebanon 12724 T 22 22
39 Lebanon 12725 T 22 22
40 Lebanon 12726 G 22 22
41 Lebanon 12727 T 22 22
42 Lebanon 12728 G 22 22
43 Lebanon 12729 C 22 22
44 Lebanon 12730 T 22 22
45 Lebanon 12731 G 22 22
46 Lebanon 12732 C 22 22
47 Lebanon 12733 C 22 22
48 Lebanon 12734 G 22 22
49 Lebanon 12735 G 22 22
50 Lebanon 12736 T 22 22
51 Lebanon 12737 A 22 22
52 Lebanon 12738 C 22 22
53 Lebanon 12739 T 22 22
54 Lebanon 12740 A 22 22
55 Lebanon 12741 C 22 22
56 Lebanon 12742 A 22 22
57 Lebanon 12743 C 22 22
58 Lebanon 12744 A 22 22
59 Lebanon 12745 A 22 22
60 Lebanon 12746 A 22 22
61 Lebanon 12747 C 22 22
62 Lebanon 12748 T 22 22
63 Lebanon 12749 G 22 22
64 Lebanon 12750 C 22 22
65 Lebanon 12751 T 22 22
66 Lebanon 12752 T 22 22
67 Lebanon 12753 G 22 22
68 Lebanon 12754 C 22 22
69 Lebanon 12755 A 22 22
70 Lebanon 12756 C 22 22
71 Lebanon 12757 T 22 22
72 Lebanon 12758 G 22 22
73 Lebanon 12759 A 22 22
74 Lebanon 12760 T 22 22
75 Lebanon 12761 G 22 22
76 Lebanon 12762 A 22 22
77 Lebanon 12763 C 22 22
78 Lebanon 12764 A 22 22
79 Lebanon 12765 A 22 22
80 Lebanon 12766 T 22 22
81 Lebanon 12767 G 22 22
82 Lebanon 12768 C T 22 21 Ala4168Val
83 Lebanon 12769 G 22 22
84 Lebanon 12770 T 22 22
85 Lebanon 12771 T 22 22
86 Lebanon 12772 A 22 22
87 Lebanon 12773 G 23 23
88 Lebanon 12774 C 23 23
89 Lebanon 12775 T 23 23
90 Lebanon 12776 T 23 23
91 Lebanon 12777 A 23 23
92 Lebanon 12778 C 23 23
93 Lebanon 12779 T 23 23
94 Lebanon 12780 A 23 23
95 Lebanon 12781 C 23 23
96 Lebanon 12782 A 23 23
97 Lebanon 12783 A 23 23
98 Lebanon 12784 C 23 23
99 Lebanon 12785 A 23 23
100 Lebanon 12786 C 23 23
101 Lebanon 12787 A 23 23
102 Lebanon 12788 A 23 23
103 Lebanon 12789 C 23 23
104 Lebanon 12790 A 23 23
105 Lebanon 12791 A 23 23
106 Lebanon 12792 A 23 23
107 Lebanon 12793 G 23 23
108 Lebanon 12794 G 23 23
109 Lebanon 12795 G 23 23
110 Lebanon 12796 A 23 23
111 Lebanon 12797 G 23 23
112 Lebanon 12798 G 23 23
113 Lebanon 12799 T 23 23
114 Lebanon 12800 A 23 23
115 Lebanon 12801 G 23 23
116 Lebanon 12802 G 23 23
117 Lebanon 12803 T 23 23
118 Lebanon 12804 T 23 23
119 Lebanon 12805 T 23 23
120 Lebanon 12806 G 23 23
121 Lebanon 12807 T 23 23
122 Lebanon 12808 A 23 23
123 Lebanon 12809 C 23 23
124 Lebanon 12810 T 23 23
125 Lebanon 12811 T 23 23
126 Lebanon 12812 G 23 23
127 Lebanon 12813 C 23 23
128 Lebanon 12814 A 23 23
129 Lebanon 12815 C 23 23
130 Lebanon 12816 T 23 23
131 Lebanon 12817 G 23 23
132 Lebanon 12818 T 23 23
133 Lebanon 12819 T 23 23
134 Lebanon 12820 A 23 23
135 Lebanon 12821 T 23 23
136 Lebanon 12822 C 23 23
137 Lebanon 12823 C 23 23
138 Lebanon 12824 G 23 23
139 Lebanon 12825 A 23 23
140 Lebanon 12826 T 23 23
141 Lebanon 12827 T 23 23
142 Lebanon 12828 T 23 23
143 Lebanon 12829 A 23 23
144 Lebanon 12830 C 23 23
145 Lebanon 12831 A 23 23
146 Lebanon 12832 G 23 23
147 Lebanon 12833 G 23 23
148 Lebanon 12834 A 23 23
149 Lebanon 12835 T 23 23
150 Lebanon 12836 T 23 23
151 Lebanon 12837 T 23 23
152 Lebanon 12838 G 23 23
153 Lebanon 12839 A 23 23
154 Lebanon 12840 A 23 23
155 Lebanon 12841 A 23 23
156 Lebanon 12842 T 23 23
157 Lebanon 12843 G 23 23
158 Lebanon 12844 G 23 23
159 Lebanon 12845 G 23 23
160 Lebanon 12846 C 23 23
161 Lebanon 12847 T 23 23
162 Lebanon 12848 A 23 23
163 Lebanon 12849 G 23 23
164 Lebanon 12850 A 23 23
165 Lebanon 12851 T 23 23
166 Lebanon 12852 T 23 23
167 Lebanon 12853 C 23 23
168 Lebanon 12854 C 23 23
169 Lebanon 12855 C 23 23
170 Lebanon 12856 T 23 23
171 Lebanon 12857 A 23 23
172 Lebanon 12858 A 23 23
173 Lebanon 12859 G 23 23
174 Lebanon 12860 A 23 23
175 Lebanon 12861 G 23 23
176 Lebanon 12862 T 23 23
177 Lebanon 12863 G 23 23
178 Lebanon 12864 A 23 23
179 Lebanon 12865 T 23 23
180 Lebanon 12866 G 23 23
181 Lebanon 12867 G 23 23
182 Lebanon 12868 A 23 23
183 Lebanon 12869 A 23 23
184 Lebanon 12870 C 23 23
185 Lebanon 12871 T 23 23
186 Lebanon 12872 G 23 23
187 Lebanon 12873 G 23 23
188 Lebanon 12874 T 23 23
189 Lebanon 12875 A 23 23
190 Lebanon 12876 C 23 23
191 Lebanon 12877 T 23 23
192 Lebanon 12878 A 23 23
193 Lebanon 12879 T 23 23
194 Lebanon 12880 C 23 23
195 Lebanon 12881 T 23 23
196 Lebanon 12882 A 23 23
197 Lebanon 12883 T 23 23
198 Lebanon 12884 A 23 23
199 Lebanon 12885 C 23 23
200 Lebanon 12886 A 23 23
201 Lebanon 12887 G 23 23
202 Lebanon 12888 A 23 23
203 Lebanon 12889 A 23 23
204 Lebanon 12890 C 23 23
205 Lebanon 12891 T 23 23
206 Lebanon 12892 G 23 23
207 Lebanon 12893 G 23 23
208 Lebanon 12894 A 23 23
209 Lebanon 12895 A 23 23
210 Lebanon 12896 C 23 23
211 Lebanon 12897 C 23 23
212 Lebanon 12898 A 23 23
213 Lebanon 12899 C 23 23
214 Lebanon 12900 C 23 23
215 Lebanon 12901 T 23 23
216 Lebanon 12902 T 23 23
217 Lebanon 12903 G 23 23
218 Lebanon 12904 T 23 23
219 Lebanon 12905 A 23 23
220 Lebanon 12906 G 23 23
221 Lebanon 12907 G 23 23
222 Lebanon 12908 T 23 23
223 Lebanon 12909 T 23 23
224 Lebanon 12910 T 23 23
225 Lebanon 12911 G 23 23
226 Lebanon 12912 T 23 23
227 Lebanon 12913 T 23 23
228 Lebanon 12914 A 23 23
229 Lebanon 12915 C 23 23
230 Lebanon 12916 A 23 23
231 Lebanon 12917 G 23 23
232 Lebanon 12918 A 23 23
233 Lebanon 12919 C 23 23
234 Lebanon 12920 A 23 23
235 Lebanon 12921 C 23 23
236 Lebanon 12922 A 23 23
237 Lebanon 12923 C 23 23
238 Lebanon 12924 C 23 23
239 Lebanon 12925 T 23 23
240 Lebanon 12926 A 23 23
241 Lebanon 12927 A 23 23
242 Lebanon 12928 A 23 23
243 Lebanon 12929 G 23 23
244 Lebanon 12930 G 23 23
245 Lebanon 12931 T 23 23
246 Lebanon 12932 C 23 23
247 Lebanon 12933 C 23 23
248 Lebanon 12934 T 23 23
249 Lebanon 12935 A 23 23
250 Lebanon 12936 A 23 23
251 Lebanon 12937 A 23 23
252 Lebanon 12938 G 23 23
253 Lebanon 12939 T 23 23
254 Lebanon 12940 G 23 23
255 Lebanon 12941 A 23 23
256 Lebanon 12942 A 23 23
257 Lebanon 12943 G 23 23
258 Lebanon 12944 T 23 23
259 Lebanon 12945 A 23 23
260 Lebanon 12946 T 23 23
261 Lebanon 12947 T 23 23
262 Lebanon 12948 T 23 23
263 Lebanon 12949 A 23 23
264 Lebanon 12950 T 23 23
265 Lebanon 12951 A 23 23
266 Lebanon 12952 C 23 23
267 Lebanon 12953 T 23 23
268 Lebanon 12954 T 23 23
269 Lebanon 12955 T 23 23
270 Lebanon 12956 A 23 23
271 Lebanon 12957 T 23 23
272 Lebanon 12958 T 23 23
273 Lebanon 12959 A 23 23
274 Lebanon 12960 A 23 23
275 Lebanon 12961 A 23 23
276 Lebanon 12962 G 23 23
277 Lebanon 12963 G 23 23
278 Lebanon 12964 A 23 23
279 Lebanon 12965 T 23 23
280 Lebanon 12966 T 23 23
281 Lebanon 12967 A 23 23
282 Lebanon 12968 A 23 23
283 Lebanon 12969 A 23 23
284 Lebanon 12970 C 23 23
285 Lebanon 12971 A 23 23
286 Lebanon 12972 A 23 23
287 Lebanon 12973 C 23 23
288 Lebanon 12974 C 23 23
289 Lebanon 12975 T 23 23
290 Lebanon 12976 A 23 23
291 Lebanon 12977 A 23 23
292 Lebanon 12978 A 23 23
293 Lebanon 12979 T 23 23
294 Lebanon 12980 A 23 23
295 Lebanon 12981 G 23 23
296 Lebanon 12982 A 23 23
297 Lebanon 12983 G 23 23
298 Lebanon 12984 G 23 23
299 Lebanon 12985 T 23 23
300 Lebanon 12986 A 23 23
301 Lebanon 12987 T 23 23
302 Lebanon 12988 G 23 23
303 Lebanon 12989 G 23 23
304 Lebanon 12990 T 23 23
305 Lebanon 12991 A 23 23
306 Lebanon 12992 C 23 23
307 Lebanon 12993 T 23 23
308 Lebanon 12994 T 23 23
309 Lebanon 12995 G 23 23
310 Lebanon 12996 G 23 23
311 Lebanon 12997 T 23 23
312 Lebanon 12998 A 23 23
313 Lebanon 12999 G 23 23
314 Lebanon 13000 T 23 23
315 Lebanon 13001 T 23 23
316 Lebanon 13002 T 23 23
317 Lebanon 13003 A 23 23
318 Lebanon 13004 G 23 23
319 Lebanon 13005 C 23 23
320 Lebanon 13006 T 23 23
321 Lebanon 13007 G 23 23
322 Lebanon 13008 C 23 23
323 Lebanon 13009 C 23 23
324 Lebanon 13010 A 23 23
325 Lebanon 13011 C 23 23
326 Lebanon 13012 A 23 23
327 Lebanon 13013 G 23 23
328 Lebanon 13014 T 23 23
329 Lebanon 13015 A 23 23
330 Lebanon 13016 C 23 23
331 Lebanon 13017 G 23 23
332 Lebanon 13018 T 23 23
333 Lebanon 13019 C 23 23
334 Lebanon 13020 T 23 23
335 Lebanon 13021 A 23 23
336 Lebanon 13022 C 23 23
337 Lebanon 13023 A 23 23
338 Lebanon 13024 A 23 23