National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                 1                    
M   6             1                        
N   21                                      
P   18                               1      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Latvia 12686 A 233 233
1 Latvia 12687 A 233 233
2 Latvia 12688 T 233 233
3 Latvia 12689 A 233 233
4 Latvia 12690 A 233 233
5 Latvia 12691 T 233 233
6 Latvia 12692 G 233 233
7 Latvia 12693 A 233 233
8 Latvia 12694 G 233 233
9 Latvia 12695 C 233 233
10 Latvia 12696 T 233 233
11 Latvia 12697 T 233 233
12 Latvia 12698 A 233 233
13 Latvia 12699 G 233 233
14 Latvia 12700 T 233 233
15 Latvia 12701 C 233 233
16 Latvia 12702 C 233 233
17 Latvia 12703 T 233 233
18 Latvia 12704 G 233 233
19 Latvia 12705 T 233 233
20 Latvia 12706 T 233 233
21 Latvia 12707 G 233 233
22 Latvia 12708 C 233 233
23 Latvia 12709 A 233 233
24 Latvia 12710 C 233 233
25 Latvia 12711 T 233 233
26 Latvia 12712 A 233 233
27 Latvia 12713 C 233 233
28 Latvia 12714 G 233 233
29 Latvia 12715 A 233 233
30 Latvia 12716 C 233 233
31 Latvia 12717 A 233 233
32 Latvia 12718 G 233 233
33 Latvia 12719 A 233 233
34 Latvia 12720 T 233 233
35 Latvia 12721 G 233 233
36 Latvia 12722 T 233 233
37 Latvia 12723 C 233 233
38 Latvia 12724 T 233 233
39 Latvia 12725 T 233 233
40 Latvia 12726 G 233 233
41 Latvia 12727 T 233 233
42 Latvia 12728 G 233 233
43 Latvia 12729 C 233 233
44 Latvia 12730 T 233 233
45 Latvia 12731 G 233 233
46 Latvia 12732 C 233 233
47 Latvia 12733 C 233 233
48 Latvia 12734 G 233 233
49 Latvia 12735 G 233 233
50 Latvia 12736 T 233 233
51 Latvia 12737 A 233 233
52 Latvia 12738 C 233 233
53 Latvia 12739 T 233 233
54 Latvia 12740 A 233 233
55 Latvia 12741 C 233 233
56 Latvia 12742 A 233 233
57 Latvia 12743 C 233 233
58 Latvia 12744 A 233 233
59 Latvia 12745 A 233 233
60 Latvia 12746 A 233 233
61 Latvia 12747 C 233 233
62 Latvia 12748 T 233 233
63 Latvia 12749 G 233 233
64 Latvia 12750 C 233 233
65 Latvia 12751 T 233 233
66 Latvia 12752 T 233 233
67 Latvia 12753 G 233 233
68 Latvia 12754 C 233 233
69 Latvia 12755 A 233 233
70 Latvia 12756 C 233 233
71 Latvia 12757 T 233 233
72 Latvia 12758 G 233 233
73 Latvia 12759 A 233 233
74 Latvia 12760 T 233 233
75 Latvia 12761 G 233 233
76 Latvia 12762 A 233 233
77 Latvia 12763 C 233 233
78 Latvia 12764 A 233 233
79 Latvia 12765 A 233 233
80 Latvia 12766 T 233 233
81 Latvia 12767 G 233 233
82 Latvia 12768 C 233 233
83 Latvia 12769 G 233 233
84 Latvia 12770 T 233 233
85 Latvia 12771 T 233 233
86 Latvia 12772 A 233 233
87 Latvia 12773 G 233 233
88 Latvia 12774 C 233 233
89 Latvia 12775 T 233 233
90 Latvia 12776 T 233 233
91 Latvia 12777 A 233 233
92 Latvia 12778 C 233 233
93 Latvia 12779 T 233 233
94 Latvia 12780 A 233 233
95 Latvia 12781 C 233 233
96 Latvia 12782 A 233 233
97 Latvia 12783 A 233 233
98 Latvia 12784 C 233 233
99 Latvia 12785 A 233 233
100 Latvia 12786 C 233 233
101 Latvia 12787 A 233 233
102 Latvia 12788 A 233 233
103 Latvia 12789 C 233 233
104 Latvia 12790 A 233 233
105 Latvia 12791 A 233 233
106 Latvia 12792 A 233 233
107 Latvia 12793 G 233 233
108 Latvia 12794 G 233 233
109 Latvia 12795 G 233 233
110 Latvia 12796 A 233 233
111 Latvia 12797 G 233 233
112 Latvia 12798 G 233 233
113 Latvia 12799 T 233 233
114 Latvia 12800 A 233 233
115 Latvia 12801 G 233 233
116 Latvia 12802 G 233 233
117 Latvia 12803 T 233 233
118 Latvia 12804 T 233 233
119 Latvia 12805 T 233 233
120 Latvia 12806 G 233 233
121 Latvia 12807 T 233 233
122 Latvia 12808 A 233 233
123 Latvia 12809 C 233 233
124 Latvia 12810 T 233 233
125 Latvia 12811 T 233 233
126 Latvia 12812 G 233 233
127 Latvia 12813 C 233 233
128 Latvia 12814 A 233 233
129 Latvia 12815 C 233 233
130 Latvia 12816 T 233 233
131 Latvia 12817 G 233 233
132 Latvia 12818 T 233 233
133 Latvia 12819 T 233 233
134 Latvia 12820 A 233 233
135 Latvia 12821 T 233 233
136 Latvia 12822 C 233 233
137 Latvia 12823 C 233 233
138 Latvia 12824 G 233 233
139 Latvia 12825 A 233 233
140 Latvia 12826 T 233 233
141 Latvia 12827 T 233 233
142 Latvia 12828 T 233 233
143 Latvia 12829 A 233 233
144 Latvia 12830 C 233 233
145 Latvia 12831 A 233 233
146 Latvia 12832 G 233 233
147 Latvia 12833 G 233 233
148 Latvia 12834 A 233 233
149 Latvia 12835 T 233 233
150 Latvia 12836 T 233 233
151 Latvia 12837 T 233 233
152 Latvia 12838 G 233 233
153 Latvia 12839 A 233 233
154 Latvia 12840 A 233 233
155 Latvia 12841 A 233 233
156 Latvia 12842 T 233 233
157 Latvia 12843 G 233 233
158 Latvia 12844 G 233 233
159 Latvia 12845 G 233 233
160 Latvia 12846 C 233 233
161 Latvia 12847 T 233 233
162 Latvia 12848 A 233 233
163 Latvia 12849 G 233 233
164 Latvia 12850 A 233 233
165 Latvia 12851 T 233 233
166 Latvia 12852 T 233 233
167 Latvia 12853 C 233 233
168 Latvia 12854 C 233 233
169 Latvia 12855 C 233 233
170 Latvia 12856 T 233 233
171 Latvia 12857 A 233 233
172 Latvia 12858 A 233 233
173 Latvia 12859 G 233 233
174 Latvia 12860 A 233 233
175 Latvia 12861 G 233 233
176 Latvia 12862 T 233 233
177 Latvia 12863 G 233 233
178 Latvia 12864 A 233 233
179 Latvia 12865 T 233 233
180 Latvia 12866 G 233 233
181 Latvia 12867 G 233 233
182 Latvia 12868 A 233 233
183 Latvia 12869 A 233 233
184 Latvia 12870 C 233 233
185 Latvia 12871 T 233 233
186 Latvia 12872 G 233 233
187 Latvia 12873 G 233 233
188 Latvia 12874 T 233 233
189 Latvia 12875 A 233 233
190 Latvia 12876 C 233 233
191 Latvia 12877 T 233 233
192 Latvia 12878 A 233 233
193 Latvia 12879 T 233 233
194 Latvia 12880 C 233 233
195 Latvia 12881 T 233 233
196 Latvia 12882 A 233 233
197 Latvia 12883 T 233 233
198 Latvia 12884 A 233 233
199 Latvia 12885 C 233 233
200 Latvia 12886 A 233 233
201 Latvia 12887 G 233 233
202 Latvia 12888 A 233 233
203 Latvia 12889 A 233 233
204 Latvia 12890 C 233 233
205 Latvia 12891 T 233 233
206 Latvia 12892 G 233 233
207 Latvia 12893 G 233 233
208 Latvia 12894 A 233 233
209 Latvia 12895 A 233 233
210 Latvia 12896 C 233 233
211 Latvia 12897 C 233 233
212 Latvia 12898 A 233 233
213 Latvia 12899 C 233 233
214 Latvia 12900 C 233 233
215 Latvia 12901 T 233 233
216 Latvia 12902 T 233 233
217 Latvia 12903 G 233 233
218 Latvia 12904 T 233 233
219 Latvia 12905 A 233 233
220 Latvia 12906 G 233 233
221 Latvia 12907 G 233 233
222 Latvia 12908 T 233 233
223 Latvia 12909 T 233 233
224 Latvia 12910 T 233 233
225 Latvia 12911 G 233 233
226 Latvia 12912 T 233 233
227 Latvia 12913 T 233 233
228 Latvia 12914 A 233 233
229 Latvia 12915 C 233 233
230 Latvia 12916 A 233 233
231 Latvia 12917 G 233 233
232 Latvia 12918 A 233 233
233 Latvia 12919 C 233 233
234 Latvia 12920 A 233 233
235 Latvia 12921 C 233 233
236 Latvia 12922 A 233 233
237 Latvia 12923 C A 233 232 Pro4220Thr
238 Latvia 12924 C 233 233
239 Latvia 12925 T 233 233
240 Latvia 12926 A 233 233
241 Latvia 12927 A 233 233
242 Latvia 12928 A 233 233
243 Latvia 12929 G 233 233
244 Latvia 12930 G 233 233
245 Latvia 12931 T 233 233
246 Latvia 12932 C 233 233
247 Latvia 12933 C 233 233
248 Latvia 12934 T 233 233
249 Latvia 12935 A 233 233
250 Latvia 12936 A 233 233
251 Latvia 12937 A 233 233
252 Latvia 12938 G 233 233
253 Latvia 12939 T 233 233
254 Latvia 12940 G 233 233
255 Latvia 12941 A 233 233
256 Latvia 12942 A 233 233
257 Latvia 12943 G 233 233
258 Latvia 12944 T 233 233
259 Latvia 12945 A 233 233
260 Latvia 12946 T 233 233
261 Latvia 12947 T 233 233
262 Latvia 12948 T 233 233
263 Latvia 12949 A 233 233
264 Latvia 12950 T 233 233
265 Latvia 12951 A 233 233
266 Latvia 12952 C 233 233
267 Latvia 12953 T 233 233
268 Latvia 12954 T 233 233
269 Latvia 12955 T 233 233
270 Latvia 12956 A 233 233
271 Latvia 12957 T 233 233
272 Latvia 12958 T 233 233
273 Latvia 12959 A 233 233
274 Latvia 12960 A 233 233
275 Latvia 12961 A 233 233
276 Latvia 12962 G 233 233
277 Latvia 12963 G 233 233
278 Latvia 12964 A 233 233
279 Latvia 12965 T 233 233
280 Latvia 12966 T 233 233
281 Latvia 12967 A 233 233
282 Latvia 12968 A 233 233
283 Latvia 12969 A 233 233
284 Latvia 12970 C 233 233
285 Latvia 12971 A 233 233
286 Latvia 12972 A 233 233
287 Latvia 12973 C 233 233
288 Latvia 12974 C 233 233
289 Latvia 12975 T 233 233
290 Latvia 12976 A 233 233
291 Latvia 12977 A 233 233
292 Latvia 12978 A 233 233
293 Latvia 12979 T 233 233
294 Latvia 12980 A 233 233
295 Latvia 12981 G 233 233
296 Latvia 12982 A 233 233
297 Latvia 12983 G 233 233
298 Latvia 12984 G 233 233
299 Latvia 12985 T 233 233
300 Latvia 12986 A 233 233
301 Latvia 12987 T 233 233
302 Latvia 12988 G T 233 232 Met4241Ile
303 Latvia 12989 G 233 233
304 Latvia 12990 T 233 233
305 Latvia 12991 A 233 233
306 Latvia 12992 C 233 233
307 Latvia 12993 T 233 233
308 Latvia 12994 T 233 233
309 Latvia 12995 G 233 233
310 Latvia 12996 G 233 233
311 Latvia 12997 T 233 233
312 Latvia 12998 A 233 233
313 Latvia 12999 G 233 233
314 Latvia 13000 T 233 233
315 Latvia 13001 T 233 233
316 Latvia 13002 T 233 233
317 Latvia 13003 A 233 233
318 Latvia 13004 G 233 233
319 Latvia 13005 C 233 233
320 Latvia 13006 T 233 233
321 Latvia 13007 G 233 233
322 Latvia 13008 C 233 233
323 Latvia 13009 C 233 233
324 Latvia 13010 A 233 233
325 Latvia 13011 C 233 233
326 Latvia 13012 A 233 233
327 Latvia 13013 G 233 233
328 Latvia 13014 T 233 233
329 Latvia 13015 A 233 233
330 Latvia 13016 C 233 233
331 Latvia 13017 G 233 233
332 Latvia 13018 T 233 233
333 Latvia 13019 C T 233 231 Leu4252Leu
334 Latvia 13020 T 233 233
335 Latvia 13021 A 233 233
336 Latvia 13022 C 233 233
337 Latvia 13023 A 233 233
338 Latvia 13024 A 233 233