National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Kuwait 12686 A 8 8
1 Kuwait 12687 A 8 8
2 Kuwait 12688 T 8 8
3 Kuwait 12689 A 8 8
4 Kuwait 12690 A 8 8
5 Kuwait 12691 T 8 8
6 Kuwait 12692 G 8 8
7 Kuwait 12693 A 8 8
8 Kuwait 12694 G 8 8
9 Kuwait 12695 C 8 8
10 Kuwait 12696 T 8 8
11 Kuwait 12697 T 8 8
12 Kuwait 12698 A 8 8
13 Kuwait 12699 G 8 8
14 Kuwait 12700 T 8 8
15 Kuwait 12701 C 8 8
16 Kuwait 12702 C 8 8
17 Kuwait 12703 T 8 8
18 Kuwait 12704 G 8 8
19 Kuwait 12705 T 8 8
20 Kuwait 12706 T 8 8
21 Kuwait 12707 G 8 8
22 Kuwait 12708 C 8 8
23 Kuwait 12709 A 8 8
24 Kuwait 12710 C 8 8
25 Kuwait 12711 T 8 8
26 Kuwait 12712 A 8 8
27 Kuwait 12713 C 8 8
28 Kuwait 12714 G 8 8
29 Kuwait 12715 A 8 8
30 Kuwait 12716 C 8 8
31 Kuwait 12717 A 8 8
32 Kuwait 12718 G 8 8
33 Kuwait 12719 A 8 8
34 Kuwait 12720 T 8 8
35 Kuwait 12721 G 8 8
36 Kuwait 12722 T 8 8
37 Kuwait 12723 C 8 8
38 Kuwait 12724 T 8 8
39 Kuwait 12725 T 8 8
40 Kuwait 12726 G 8 8
41 Kuwait 12727 T 8 8
42 Kuwait 12728 G 8 8
43 Kuwait 12729 C 8 8
44 Kuwait 12730 T 8 8
45 Kuwait 12731 G 8 8
46 Kuwait 12732 C 8 8
47 Kuwait 12733 C 8 8
48 Kuwait 12734 G 8 8
49 Kuwait 12735 G 8 8
50 Kuwait 12736 T 8 8
51 Kuwait 12737 A 8 8
52 Kuwait 12738 C 8 8
53 Kuwait 12739 T 8 8
54 Kuwait 12740 A 8 8
55 Kuwait 12741 C 8 8
56 Kuwait 12742 A 8 8
57 Kuwait 12743 C 8 8
58 Kuwait 12744 A 8 8
59 Kuwait 12745 A 8 8
60 Kuwait 12746 A 8 8
61 Kuwait 12747 C 8 8
62 Kuwait 12748 T 8 8
63 Kuwait 12749 G 8 8
64 Kuwait 12750 C 8 8
65 Kuwait 12751 T 8 8
66 Kuwait 12752 T 8 8
67 Kuwait 12753 G 8 8
68 Kuwait 12754 C 8 8
69 Kuwait 12755 A 8 8
70 Kuwait 12756 C 8 8
71 Kuwait 12757 T 8 8
72 Kuwait 12758 G 8 8
73 Kuwait 12759 A 8 8
74 Kuwait 12760 T 8 8
75 Kuwait 12761 G 8 8
76 Kuwait 12762 A 8 8
77 Kuwait 12763 C 8 8
78 Kuwait 12764 A 8 8
79 Kuwait 12765 A 8 8
80 Kuwait 12766 T 8 8
81 Kuwait 12767 G 8 8
82 Kuwait 12768 C 8 8
83 Kuwait 12769 G 8 8
84 Kuwait 12770 T 8 8
85 Kuwait 12771 T 8 8
86 Kuwait 12772 A 8 8
87 Kuwait 12773 G 8 8
88 Kuwait 12774 C 8 8
89 Kuwait 12775 T 8 8
90 Kuwait 12776 T 8 8
91 Kuwait 12777 A 8 8
92 Kuwait 12778 C 8 8
93 Kuwait 12779 T 8 8
94 Kuwait 12780 A 8 8
95 Kuwait 12781 C 8 8
96 Kuwait 12782 A 8 8
97 Kuwait 12783 A 8 8
98 Kuwait 12784 C 8 8
99 Kuwait 12785 A 8 8
100 Kuwait 12786 C 8 8
101 Kuwait 12787 A 8 8
102 Kuwait 12788 A 8 8
103 Kuwait 12789 C 8 8
104 Kuwait 12790 A 8 8
105 Kuwait 12791 A 8 8
106 Kuwait 12792 A 8 8
107 Kuwait 12793 G 8 8
108 Kuwait 12794 G 8 8
109 Kuwait 12795 G 8 8
110 Kuwait 12796 A 8 8
111 Kuwait 12797 G 8 8
112 Kuwait 12798 G 8 8
113 Kuwait 12799 T 8 8
114 Kuwait 12800 A 8 8
115 Kuwait 12801 G 8 8
116 Kuwait 12802 G 8 8
117 Kuwait 12803 T 8 8
118 Kuwait 12804 T 8 8
119 Kuwait 12805 T 8 8
120 Kuwait 12806 G 8 8
121 Kuwait 12807 T 8 8
122 Kuwait 12808 A 8 8
123 Kuwait 12809 C 8 8
124 Kuwait 12810 T 8 8
125 Kuwait 12811 T 8 8
126 Kuwait 12812 G 8 8
127 Kuwait 12813 C 8 8
128 Kuwait 12814 A 8 8
129 Kuwait 12815 C 8 8
130 Kuwait 12816 T 8 8
131 Kuwait 12817 G 8 8
132 Kuwait 12818 T 8 8
133 Kuwait 12819 T 8 8
134 Kuwait 12820 A 8 8
135 Kuwait 12821 T 8 8
136 Kuwait 12822 C 8 8
137 Kuwait 12823 C 8 8
138 Kuwait 12824 G 8 8
139 Kuwait 12825 A 8 8
140 Kuwait 12826 T 8 8
141 Kuwait 12827 T 8 8
142 Kuwait 12828 T 8 8
143 Kuwait 12829 A 8 8
144 Kuwait 12830 C 8 8
145 Kuwait 12831 A 8 8
146 Kuwait 12832 G 8 8
147 Kuwait 12833 G 8 8
148 Kuwait 12834 A 8 8
149 Kuwait 12835 T 8 8
150 Kuwait 12836 T 8 8
151 Kuwait 12837 T 8 8
152 Kuwait 12838 G 8 8
153 Kuwait 12839 A 8 8
154 Kuwait 12840 A 8 8
155 Kuwait 12841 A 8 8
156 Kuwait 12842 T 8 8
157 Kuwait 12843 G 8 8
158 Kuwait 12844 G 8 8
159 Kuwait 12845 G 8 8
160 Kuwait 12846 C 8 8
161 Kuwait 12847 T 8 8
162 Kuwait 12848 A 8 8
163 Kuwait 12849 G 8 8
164 Kuwait 12850 A 8 8
165 Kuwait 12851 T 8 8
166 Kuwait 12852 T 8 8
167 Kuwait 12853 C 8 8
168 Kuwait 12854 C 8 8
169 Kuwait 12855 C 8 8
170 Kuwait 12856 T 8 8
171 Kuwait 12857 A 8 8
172 Kuwait 12858 A 8 8
173 Kuwait 12859 G 8 8
174 Kuwait 12860 A 8 8
175 Kuwait 12861 G 8 8
176 Kuwait 12862 T 8 8
177 Kuwait 12863 G 8 8
178 Kuwait 12864 A 8 8
179 Kuwait 12865 T 8 8
180 Kuwait 12866 G 8 8
181 Kuwait 12867 G 8 8
182 Kuwait 12868 A 8 8
183 Kuwait 12869 A 8 8
184 Kuwait 12870 C 8 8
185 Kuwait 12871 T 8 8
186 Kuwait 12872 G 8 8
187 Kuwait 12873 G 8 8
188 Kuwait 12874 T 8 8
189 Kuwait 12875 A 8 8
190 Kuwait 12876 C 8 8
191 Kuwait 12877 T 8 8
192 Kuwait 12878 A 8 8
193 Kuwait 12879 T 8 8
194 Kuwait 12880 C 8 8
195 Kuwait 12881 T 8 8
196 Kuwait 12882 A 8 8
197 Kuwait 12883 T 8 8
198 Kuwait 12884 A 8 8
199 Kuwait 12885 C 8 8
200 Kuwait 12886 A 8 8
201 Kuwait 12887 G 8 8
202 Kuwait 12888 A 8 8
203 Kuwait 12889 A 8 8
204 Kuwait 12890 C 8 8
205 Kuwait 12891 T 8 8
206 Kuwait 12892 G 8 8
207 Kuwait 12893 G 8 7
208 Kuwait 12894 A 8 8
209 Kuwait 12895 A 8 8
210 Kuwait 12896 C 8 8
211 Kuwait 12897 C 8 8
212 Kuwait 12898 A 8 8
213 Kuwait 12899 C 8 8
214 Kuwait 12900 C 8 8
215 Kuwait 12901 T 8 8
216 Kuwait 12902 T 8 8
217 Kuwait 12903 G 8 7
218 Kuwait 12904 T 8 8
219 Kuwait 12905 A 8 8
220 Kuwait 12906 G 8 8
221 Kuwait 12907 G 8 8
222 Kuwait 12908 T 8 8
223 Kuwait 12909 T 8 8
224 Kuwait 12910 T 8 8
225 Kuwait 12911 G 8 8
226 Kuwait 12912 T 8 8
227 Kuwait 12913 T 8 8
228 Kuwait 12914 A 8 8
229 Kuwait 12915 C 8 8
230 Kuwait 12916 A 8 8
231 Kuwait 12917 G 8 8
232 Kuwait 12918 A 8 8
233 Kuwait 12919 C 8 8
234 Kuwait 12920 A 8 8
235 Kuwait 12921 C 8 8
236 Kuwait 12922 A 8 8
237 Kuwait 12923 C 8 8
238 Kuwait 12924 C 8 8
239 Kuwait 12925 T 8 8
240 Kuwait 12926 A 8 8
241 Kuwait 12927 A 8 8
242 Kuwait 12928 A 8 8
243 Kuwait 12929 G 8 8
244 Kuwait 12930 G 8 8
245 Kuwait 12931 T 8 8
246 Kuwait 12932 C 8 8
247 Kuwait 12933 C 8 8
248 Kuwait 12934 T 8 8
249 Kuwait 12935 A 8 8
250 Kuwait 12936 A 8 8
251 Kuwait 12937 A 8 8
252 Kuwait 12938 G 8 8
253 Kuwait 12939 T 8 8
254 Kuwait 12940 G 8 8
255 Kuwait 12941 A 8 8
256 Kuwait 12942 A 8 8
257 Kuwait 12943 G 8 8
258 Kuwait 12944 T 8 8
259 Kuwait 12945 A 8 8
260 Kuwait 12946 T 8 8
261 Kuwait 12947 T 8 8
262 Kuwait 12948 T 8 8
263 Kuwait 12949 A 8 8
264 Kuwait 12950 T 8 8
265 Kuwait 12951 A 8 8
266 Kuwait 12952 C 8 8
267 Kuwait 12953 T 8 8
268 Kuwait 12954 T 8 8
269 Kuwait 12955 T 8 8
270 Kuwait 12956 A 8 8
271 Kuwait 12957 T 8 8
272 Kuwait 12958 T 8 8
273 Kuwait 12959 A 8 8
274 Kuwait 12960 A 8 8
275 Kuwait 12961 A 8 8
276 Kuwait 12962 G 8 8
277 Kuwait 12963 G 8 8
278 Kuwait 12964 A 8 8
279 Kuwait 12965 T 8 8
280 Kuwait 12966 T 8 8
281 Kuwait 12967 A 8 8
282 Kuwait 12968 A 8 8
283 Kuwait 12969 A 8 8
284 Kuwait 12970 C 8 8
285 Kuwait 12971 A 8 8
286 Kuwait 12972 A 8 8
287 Kuwait 12973 C 8 8
288 Kuwait 12974 C 8 8
289 Kuwait 12975 T 8 8
290 Kuwait 12976 A 8 8
291 Kuwait 12977 A 8 8
292 Kuwait 12978 A 8 8
293 Kuwait 12979 T 8 8
294 Kuwait 12980 A 8 8
295 Kuwait 12981 G 8 8
296 Kuwait 12982 A 8 8
297 Kuwait 12983 G 8 8
298 Kuwait 12984 G 8 8
299 Kuwait 12985 T 8 8
300 Kuwait 12986 A 8 8
301 Kuwait 12987 T 8 8
302 Kuwait 12988 G 8 8
303 Kuwait 12989 G 8 8
304 Kuwait 12990 T 8 8
305 Kuwait 12991 A 8 8
306 Kuwait 12992 C 8 8
307 Kuwait 12993 T 8 8
308 Kuwait 12994 T 8 8
309 Kuwait 12995 G 8 8
310 Kuwait 12996 G 8 8
311 Kuwait 12997 T 8 8
312 Kuwait 12998 A 8 8
313 Kuwait 12999 G 8 8
314 Kuwait 13000 T 8 8
315 Kuwait 13001 T 8 8
316 Kuwait 13002 T 8 8
317 Kuwait 13003 A 8 8
318 Kuwait 13004 G 8 8
319 Kuwait 13005 C 8 8
320 Kuwait 13006 T 8 8
321 Kuwait 13007 G 8 8
322 Kuwait 13008 C 8 8
323 Kuwait 13009 C 8 8
324 Kuwait 13010 A 8 8
325 Kuwait 13011 C 8 8
326 Kuwait 13012 A 8 8
327 Kuwait 13013 G 8 8
328 Kuwait 13014 T 8 8
329 Kuwait 13015 A 8 8
330 Kuwait 13016 C 8 8
331 Kuwait 13017 G 8 8
332 Kuwait 13018 T 8 8
333 Kuwait 13019 C 8 8
334 Kuwait 13020 T 8 8
335 Kuwait 13021 A 8 8
336 Kuwait 13022 C 8 8
337 Kuwait 13023 A 8 8
338 Kuwait 13024 A 8 8