National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Kazakhstan 12686 A 53 53
1 Kazakhstan 12687 A 53 53
2 Kazakhstan 12688 T 53 53
3 Kazakhstan 12689 A 53 53
4 Kazakhstan 12690 A 53 53
5 Kazakhstan 12691 T 53 53
6 Kazakhstan 12692 G 53 53
7 Kazakhstan 12693 A 53 53
8 Kazakhstan 12694 G 53 53
9 Kazakhstan 12695 C 53 53
10 Kazakhstan 12696 T 53 53
11 Kazakhstan 12697 T 53 53
12 Kazakhstan 12698 A 53 53
13 Kazakhstan 12699 G 53 53
14 Kazakhstan 12700 T 53 53
15 Kazakhstan 12701 C 53 53
16 Kazakhstan 12702 C 53 53
17 Kazakhstan 12703 T 53 53
18 Kazakhstan 12704 G 53 53
19 Kazakhstan 12705 T 53 53
20 Kazakhstan 12706 T 53 53
21 Kazakhstan 12707 G 53 53
22 Kazakhstan 12708 C 53 53
23 Kazakhstan 12709 A 53 53
24 Kazakhstan 12710 C 53 53
25 Kazakhstan 12711 T 53 53
26 Kazakhstan 12712 A 53 53
27 Kazakhstan 12713 C 53 53
28 Kazakhstan 12714 G 53 53
29 Kazakhstan 12715 A 53 53
30 Kazakhstan 12716 C 53 53
31 Kazakhstan 12717 A 53 53
32 Kazakhstan 12718 G 53 53
33 Kazakhstan 12719 A 53 53
34 Kazakhstan 12720 T 53 53
35 Kazakhstan 12721 G 53 53
36 Kazakhstan 12722 T 53 53
37 Kazakhstan 12723 C 53 53
38 Kazakhstan 12724 T 53 53
39 Kazakhstan 12725 T 53 53
40 Kazakhstan 12726 G 53 53
41 Kazakhstan 12727 T 53 53
42 Kazakhstan 12728 G 53 53
43 Kazakhstan 12729 C 53 53
44 Kazakhstan 12730 T 53 53
45 Kazakhstan 12731 G 53 53
46 Kazakhstan 12732 C 53 53
47 Kazakhstan 12733 C 53 53
48 Kazakhstan 12734 G 53 53
49 Kazakhstan 12735 G 53 53
50 Kazakhstan 12736 T 53 53
51 Kazakhstan 12737 A 53 53
52 Kazakhstan 12738 C 53 53
53 Kazakhstan 12739 T 53 53
54 Kazakhstan 12740 A 53 53
55 Kazakhstan 12741 C 53 53
56 Kazakhstan 12742 A 53 53
57 Kazakhstan 12743 C 53 53
58 Kazakhstan 12744 A 53 53
59 Kazakhstan 12745 A 53 53
60 Kazakhstan 12746 A 53 53
61 Kazakhstan 12747 C 53 53
62 Kazakhstan 12748 T 53 53
63 Kazakhstan 12749 G 53 53
64 Kazakhstan 12750 C 53 53
65 Kazakhstan 12751 T 53 53
66 Kazakhstan 12752 T 53 53
67 Kazakhstan 12753 G 53 53
68 Kazakhstan 12754 C 53 53
69 Kazakhstan 12755 A 53 53
70 Kazakhstan 12756 C 53 53
71 Kazakhstan 12757 T 53 53
72 Kazakhstan 12758 G 53 53
73 Kazakhstan 12759 A 53 53
74 Kazakhstan 12760 T 53 53
75 Kazakhstan 12761 G 53 53
76 Kazakhstan 12762 A 53 53
77 Kazakhstan 12763 C 53 53
78 Kazakhstan 12764 A 53 53
79 Kazakhstan 12765 A 53 53
80 Kazakhstan 12766 T 53 53
81 Kazakhstan 12767 G 53 53
82 Kazakhstan 12768 C 53 53
83 Kazakhstan 12769 G 53 53
84 Kazakhstan 12770 T 53 53
85 Kazakhstan 12771 T 53 53
86 Kazakhstan 12772 A 53 53
87 Kazakhstan 12773 G 53 53
88 Kazakhstan 12774 C 53 53
89 Kazakhstan 12775 T 53 53
90 Kazakhstan 12776 T 53 53
91 Kazakhstan 12777 A 53 53
92 Kazakhstan 12778 C 53 53
93 Kazakhstan 12779 T 53 53
94 Kazakhstan 12780 A 53 53
95 Kazakhstan 12781 C 53 53
96 Kazakhstan 12782 A 53 53
97 Kazakhstan 12783 A 53 53
98 Kazakhstan 12784 C 53 53
99 Kazakhstan 12785 A 53 53
100 Kazakhstan 12786 C 53 53
101 Kazakhstan 12787 A 53 53
102 Kazakhstan 12788 A 53 53
103 Kazakhstan 12789 C 53 53
104 Kazakhstan 12790 A 53 53
105 Kazakhstan 12791 A 53 53
106 Kazakhstan 12792 A 53 53
107 Kazakhstan 12793 G 53 53
108 Kazakhstan 12794 G 53 53
109 Kazakhstan 12795 G 53 53
110 Kazakhstan 12796 A 53 53
111 Kazakhstan 12797 G 53 53
112 Kazakhstan 12798 G 53 53
113 Kazakhstan 12799 T 53 53
114 Kazakhstan 12800 A 53 53
115 Kazakhstan 12801 G 53 53
116 Kazakhstan 12802 G 53 53
117 Kazakhstan 12803 T 53 53
118 Kazakhstan 12804 T 53 53
119 Kazakhstan 12805 T 53 53
120 Kazakhstan 12806 G 53 53
121 Kazakhstan 12807 T 53 53
122 Kazakhstan 12808 A 53 53
123 Kazakhstan 12809 C 53 53
124 Kazakhstan 12810 T 53 53
125 Kazakhstan 12811 T 53 53
126 Kazakhstan 12812 G 53 53
127 Kazakhstan 12813 C 53 53
128 Kazakhstan 12814 A 53 53
129 Kazakhstan 12815 C 53 53
130 Kazakhstan 12816 T 53 53
131 Kazakhstan 12817 G 53 53
132 Kazakhstan 12818 T 53 53
133 Kazakhstan 12819 T 53 53
134 Kazakhstan 12820 A 53 53
135 Kazakhstan 12821 T 53 53
136 Kazakhstan 12822 C 53 53
137 Kazakhstan 12823 C 53 53
138 Kazakhstan 12824 G 53 53
139 Kazakhstan 12825 A 53 53
140 Kazakhstan 12826 T 53 53
141 Kazakhstan 12827 T 53 53
142 Kazakhstan 12828 T 53 53
143 Kazakhstan 12829 A 53 53
144 Kazakhstan 12830 C 53 53
145 Kazakhstan 12831 A 53 53
146 Kazakhstan 12832 G 53 53
147 Kazakhstan 12833 G 53 53
148 Kazakhstan 12834 A 53 53
149 Kazakhstan 12835 T 53 53
150 Kazakhstan 12836 T 53 53
151 Kazakhstan 12837 T 53 53
152 Kazakhstan 12838 G 53 53
153 Kazakhstan 12839 A 53 53
154 Kazakhstan 12840 A 53 53
155 Kazakhstan 12841 A 53 53
156 Kazakhstan 12842 T 53 53
157 Kazakhstan 12843 G 53 53
158 Kazakhstan 12844 G 53 53
159 Kazakhstan 12845 G 53 53
160 Kazakhstan 12846 C 53 53
161 Kazakhstan 12847 T 53 53
162 Kazakhstan 12848 A 53 53
163 Kazakhstan 12849 G 53 53
164 Kazakhstan 12850 A 53 53
165 Kazakhstan 12851 T 53 53
166 Kazakhstan 12852 T 53 53
167 Kazakhstan 12853 C 53 53
168 Kazakhstan 12854 C 53 53
169 Kazakhstan 12855 C 53 53
170 Kazakhstan 12856 T 53 53
171 Kazakhstan 12857 A 53 53
172 Kazakhstan 12858 A 53 53
173 Kazakhstan 12859 G 53 53
174 Kazakhstan 12860 A 53 53
175 Kazakhstan 12861 G 53 53
176 Kazakhstan 12862 T 53 53
177 Kazakhstan 12863 G 53 53
178 Kazakhstan 12864 A 53 53
179 Kazakhstan 12865 T 53 53
180 Kazakhstan 12866 G 53 53
181 Kazakhstan 12867 G 53 53
182 Kazakhstan 12868 A 53 53
183 Kazakhstan 12869 A 53 53
184 Kazakhstan 12870 C 53 53
185 Kazakhstan 12871 T 53 53
186 Kazakhstan 12872 G 53 53
187 Kazakhstan 12873 G 53 53
188 Kazakhstan 12874 T 53 53
189 Kazakhstan 12875 A 53 53
190 Kazakhstan 12876 C 53 53
191 Kazakhstan 12877 T 53 53
192 Kazakhstan 12878 A 53 53
193 Kazakhstan 12879 T 53 53
194 Kazakhstan 12880 C 53 53
195 Kazakhstan 12881 T 53 53
196 Kazakhstan 12882 A 53 53
197 Kazakhstan 12883 T 53 53
198 Kazakhstan 12884 A 53 53
199 Kazakhstan 12885 C 53 53
200 Kazakhstan 12886 A 53 53
201 Kazakhstan 12887 G 53 53
202 Kazakhstan 12888 A 53 53
203 Kazakhstan 12889 A 53 53
204 Kazakhstan 12890 C 53 53
205 Kazakhstan 12891 T 53 53
206 Kazakhstan 12892 G 53 53
207 Kazakhstan 12893 G 53 53
208 Kazakhstan 12894 A 53 53
209 Kazakhstan 12895 A 53 53
210 Kazakhstan 12896 C 53 53
211 Kazakhstan 12897 C 53 53
212 Kazakhstan 12898 A 53 53
213 Kazakhstan 12899 C 53 53
214 Kazakhstan 12900 C 53 53
215 Kazakhstan 12901 T 53 53
216 Kazakhstan 12902 T 53 53
217 Kazakhstan 12903 G 53 53
218 Kazakhstan 12904 T 53 53
219 Kazakhstan 12905 A 53 53
220 Kazakhstan 12906 G 53 53
221 Kazakhstan 12907 G 53 53
222 Kazakhstan 12908 T 53 53
223 Kazakhstan 12909 T 53 53
224 Kazakhstan 12910 T 53 53
225 Kazakhstan 12911 G 53 53
226 Kazakhstan 12912 T 53 53
227 Kazakhstan 12913 T 53 53
228 Kazakhstan 12914 A 53 53
229 Kazakhstan 12915 C 53 53
230 Kazakhstan 12916 A 53 53
231 Kazakhstan 12917 G 53 53
232 Kazakhstan 12918 A 53 53
233 Kazakhstan 12919 C 53 53
234 Kazakhstan 12920 A 53 53
235 Kazakhstan 12921 C 53 53
236 Kazakhstan 12922 A 53 53
237 Kazakhstan 12923 C 53 53
238 Kazakhstan 12924 C 53 53
239 Kazakhstan 12925 T 53 53
240 Kazakhstan 12926 A 53 53
241 Kazakhstan 12927 A 53 53
242 Kazakhstan 12928 A 53 53
243 Kazakhstan 12929 G 53 53
244 Kazakhstan 12930 G 53 53
245 Kazakhstan 12931 T 53 53
246 Kazakhstan 12932 C 53 53
247 Kazakhstan 12933 C 53 53
248 Kazakhstan 12934 T 53 53
249 Kazakhstan 12935 A 53 53
250 Kazakhstan 12936 A 53 53
251 Kazakhstan 12937 A 53 53
252 Kazakhstan 12938 G 53 53
253 Kazakhstan 12939 T 53 53
254 Kazakhstan 12940 G 53 53
255 Kazakhstan 12941 A 53 53
256 Kazakhstan 12942 A 53 53
257 Kazakhstan 12943 G 53 53
258 Kazakhstan 12944 T 53 53
259 Kazakhstan 12945 A 53 53
260 Kazakhstan 12946 T 53 53
261 Kazakhstan 12947 T 53 53
262 Kazakhstan 12948 T 53 53
263 Kazakhstan 12949 A 53 53
264 Kazakhstan 12950 T 53 53
265 Kazakhstan 12951 A 53 53
266 Kazakhstan 12952 C 53 53
267 Kazakhstan 12953 T 53 53
268 Kazakhstan 12954 T 53 53
269 Kazakhstan 12955 T 53 53
270 Kazakhstan 12956 A 53 53
271 Kazakhstan 12957 T 53 53
272 Kazakhstan 12958 T 53 53
273 Kazakhstan 12959 A 53 53
274 Kazakhstan 12960 A 53 53
275 Kazakhstan 12961 A 53 53
276 Kazakhstan 12962 G 53 53
277 Kazakhstan 12963 G 53 53
278 Kazakhstan 12964 A 53 53
279 Kazakhstan 12965 T 53 53
280 Kazakhstan 12966 T 53 53
281 Kazakhstan 12967 A 53 53
282 Kazakhstan 12968 A 53 53
283 Kazakhstan 12969 A 53 53
284 Kazakhstan 12970 C 53 53
285 Kazakhstan 12971 A 53 53
286 Kazakhstan 12972 A 53 53
287 Kazakhstan 12973 C 53 53
288 Kazakhstan 12974 C 53 53
289 Kazakhstan 12975 T 53 53
290 Kazakhstan 12976 A 53 53
291 Kazakhstan 12977 A 53 53
292 Kazakhstan 12978 A 53 53
293 Kazakhstan 12979 T 53 53
294 Kazakhstan 12980 A 53 53
295 Kazakhstan 12981 G 53 53
296 Kazakhstan 12982 A 53 53
297 Kazakhstan 12983 G 53 53
298 Kazakhstan 12984 G 53 53
299 Kazakhstan 12985 T 53 53
300 Kazakhstan 12986 A 53 53
301 Kazakhstan 12987 T 53 53
302 Kazakhstan 12988 G 53 53
303 Kazakhstan 12989 G 53 53
304 Kazakhstan 12990 T 53 53
305 Kazakhstan 12991 A 53 53
306 Kazakhstan 12992 C 53 53
307 Kazakhstan 12993 T 53 53
308 Kazakhstan 12994 T 53 53
309 Kazakhstan 12995 G 53 53
310 Kazakhstan 12996 G 53 53
311 Kazakhstan 12997 T 53 53
312 Kazakhstan 12998 A 53 53
313 Kazakhstan 12999 G 53 53
314 Kazakhstan 13000 T 53 53
315 Kazakhstan 13001 T 53 53
316 Kazakhstan 13002 T 53 53
317 Kazakhstan 13003 A 53 53
318 Kazakhstan 13004 G 53 53
319 Kazakhstan 13005 C 53 53
320 Kazakhstan 13006 T 53 53
321 Kazakhstan 13007 G 53 53
322 Kazakhstan 13008 C 53 53
323 Kazakhstan 13009 C 53 53
324 Kazakhstan 13010 A 53 53
325 Kazakhstan 13011 C 53 53
326 Kazakhstan 13012 A 53 53
327 Kazakhstan 13013 G 53 53
328 Kazakhstan 13014 T 53 53
329 Kazakhstan 13015 A 53 53
330 Kazakhstan 13016 C 53 53
331 Kazakhstan 13017 G 53 53
332 Kazakhstan 13018 T 53 53
333 Kazakhstan 13019 C 53 53
334 Kazakhstan 13020 T 53 53
335 Kazakhstan 13021 A 53 53
336 Kazakhstan 13022 C 53 53
337 Kazakhstan 13023 A 53 53
338 Kazakhstan 13024 A 53 53