National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9   1                                  
D   18     1                                
E   9                                      
F   12                                      
G   27                                      
I   6             1                        
K   21                                      
L   45                 1                    
M   6                                      
N   21                     1                
P   18                                      
Q   12                                      
R   18                                      
S   15                             1        
T   36             1                        
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jordan 12686 A 579 579
1 Jordan 12687 A 579 579
2 Jordan 12688 T 579 579
3 Jordan 12689 A 579 579
4 Jordan 12690 A 579 579
5 Jordan 12691 T 579 579
6 Jordan 12692 G 579 579
7 Jordan 12693 A 579 579
8 Jordan 12694 G 579 579
9 Jordan 12695 C 579 579
10 Jordan 12696 T 579 579
11 Jordan 12697 T 579 579
12 Jordan 12698 A 579 579
13 Jordan 12699 G 579 579
14 Jordan 12700 T 579 579
15 Jordan 12701 C 579 579
16 Jordan 12702 C 579 579
17 Jordan 12703 T 579 579
18 Jordan 12704 G 579 579
19 Jordan 12705 T 579 579
20 Jordan 12706 T 579 579
21 Jordan 12707 G 579 579
22 Jordan 12708 C 579 579
23 Jordan 12709 A 579 579
24 Jordan 12710 C 579 579
25 Jordan 12711 T 579 579
26 Jordan 12712 A 579 579
27 Jordan 12713 C 579 579
28 Jordan 12714 G 579 579
29 Jordan 12715 A 579 579
30 Jordan 12716 C 579 579
31 Jordan 12717 A 579 579
32 Jordan 12718 G 579 579
33 Jordan 12719 A 579 579
34 Jordan 12720 T 579 579
35 Jordan 12721 G 579 579
36 Jordan 12722 T 579 579
37 Jordan 12723 C 579 579
38 Jordan 12724 T 579 579
39 Jordan 12725 T 579 579
40 Jordan 12726 G 579 579
41 Jordan 12727 T 579 579
42 Jordan 12728 G 579 579
43 Jordan 12729 C 579 579
44 Jordan 12730 T 579 579
45 Jordan 12731 G 579 579
46 Jordan 12732 C 579 579
47 Jordan 12733 C 579 579
48 Jordan 12734 G 579 579
49 Jordan 12735 G 579 579
50 Jordan 12736 T 579 579
51 Jordan 12737 A 579 579
52 Jordan 12738 C 579 579
53 Jordan 12739 T 579 579
54 Jordan 12740 A 579 579
55 Jordan 12741 C 579 579
56 Jordan 12742 A 579 579
57 Jordan 12743 C 579 579
58 Jordan 12744 A 579 579
59 Jordan 12745 A 579 579
60 Jordan 12746 A 579 579
61 Jordan 12747 C 579 579
62 Jordan 12748 T 579 579
63 Jordan 12749 G 579 579
64 Jordan 12750 C 579 579
65 Jordan 12751 T 579 579
66 Jordan 12752 T 579 579
67 Jordan 12753 G 579 579
68 Jordan 12754 C T 579 578 Cys4163Cys
69 Jordan 12755 A 579 579
70 Jordan 12756 C 579 579
71 Jordan 12757 T 579 579
72 Jordan 12758 G 579 579
73 Jordan 12759 A 579 579
74 Jordan 12760 T 579 579
75 Jordan 12761 G 579 579
76 Jordan 12762 A 579 579
77 Jordan 12763 C 579 579
78 Jordan 12764 A 579 579
79 Jordan 12765 A 579 579
80 Jordan 12766 T 579 579
81 Jordan 12767 G 579 579
82 Jordan 12768 C 579 579
83 Jordan 12769 G 579 579
84 Jordan 12770 T 579 579
85 Jordan 12771 T 579 579
86 Jordan 12772 A 579 579
87 Jordan 12773 G 579 579
88 Jordan 12774 C 579 579
89 Jordan 12775 T 579 579
90 Jordan 12776 T 579 579
91 Jordan 12777 A 579 579
92 Jordan 12778 C 579 579
93 Jordan 12779 T 579 579
94 Jordan 12780 A 579 579
95 Jordan 12781 C 579 579
96 Jordan 12782 A 579 579
97 Jordan 12783 A 579 579
98 Jordan 12784 C 579 579
99 Jordan 12785 A 579 579
100 Jordan 12786 C 579 579
101 Jordan 12787 A 579 579
102 Jordan 12788 A 579 579
103 Jordan 12789 C T 579 578 Thr4175Ile
104 Jordan 12790 A 579 579
105 Jordan 12791 A 579 579
106 Jordan 12792 A 579 579
107 Jordan 12793 G 579 579
108 Jordan 12794 G 579 579
109 Jordan 12795 G 579 579
110 Jordan 12796 A 579 579
111 Jordan 12797 G 579 579
112 Jordan 12798 G 579 579
113 Jordan 12799 T 579 579
114 Jordan 12800 A 579 579
115 Jordan 12801 G 579 579
116 Jordan 12802 G 579 579
117 Jordan 12803 T 579 579
118 Jordan 12804 T 579 579
119 Jordan 12805 T 579 579
120 Jordan 12806 G 579 579
121 Jordan 12807 T 579 579
122 Jordan 12808 A 579 579
123 Jordan 12809 C 579 579
124 Jordan 12810 T 579 579
125 Jordan 12811 T 579 579
126 Jordan 12812 G 579 579
127 Jordan 12813 C 579 579
128 Jordan 12814 A 579 579
129 Jordan 12815 C 579 579
130 Jordan 12816 T 579 579
131 Jordan 12817 G 579 579
132 Jordan 12818 T 579 579
133 Jordan 12819 T 579 579
134 Jordan 12820 A 579 579
135 Jordan 12821 T 579 579
136 Jordan 12822 C 579 579
137 Jordan 12823 C T 579 576 Ser4186Ser
138 Jordan 12824 G 579 579
139 Jordan 12825 A 579 579
140 Jordan 12826 T 579 579
141 Jordan 12827 T 579 579
142 Jordan 12828 T 579 579
143 Jordan 12829 A 579 579
144 Jordan 12830 C 579 579
145 Jordan 12831 A 579 579
146 Jordan 12832 G 579 579
147 Jordan 12833 G 579 579
148 Jordan 12834 A 579 579
149 Jordan 12835 T 579 579
150 Jordan 12836 T 579 579
151 Jordan 12837 T 579 579
152 Jordan 12838 G 579 579
153 Jordan 12839 A 579 579
154 Jordan 12840 A 579 579
155 Jordan 12841 A 579 579
156 Jordan 12842 T 579 579
157 Jordan 12843 G 579 579
158 Jordan 12844 G 579 579
159 Jordan 12845 G 579 579
160 Jordan 12846 C 579 579
161 Jordan 12847 T 579 579
162 Jordan 12848 A 579 579
163 Jordan 12849 G 579 579
164 Jordan 12850 A 579 579
165 Jordan 12851 T 579 579
166 Jordan 12852 T 579 579
167 Jordan 12853 C 579 579
168 Jordan 12854 C 579 579
169 Jordan 12855 C 579 579
170 Jordan 12856 T 579 579
171 Jordan 12857 A 579 579
172 Jordan 12858 A 579 579
173 Jordan 12859 G 579 579
174 Jordan 12860 A 579 579
175 Jordan 12861 G 579 579
176 Jordan 12862 T 579 579
177 Jordan 12863 G 579 579
178 Jordan 12864 A 579 579
179 Jordan 12865 T C 579 578 Asp4200Asp
180 Jordan 12866 G 579 579
181 Jordan 12867 G 579 579
182 Jordan 12868 A 579 579
183 Jordan 12869 A 579 579
184 Jordan 12870 C 579 579
185 Jordan 12871 T 579 579
186 Jordan 12872 G 579 579
187 Jordan 12873 G 579 579
188 Jordan 12874 T 579 579
189 Jordan 12875 A 579 579
190 Jordan 12876 C 579 579
191 Jordan 12877 T 579 579
192 Jordan 12878 A 579 579
193 Jordan 12879 T 579 579
194 Jordan 12880 C T 579 578 Ile4205Ile
195 Jordan 12881 T 579 579
196 Jordan 12882 A 579 579
197 Jordan 12883 T 579 579
198 Jordan 12884 A 579 579
199 Jordan 12885 C 579 579
200 Jordan 12886 A 579 579
201 Jordan 12887 G 579 579
202 Jordan 12888 A 579 579
203 Jordan 12889 A 579 579
204 Jordan 12890 C 579 579
205 Jordan 12891 T 579 579
206 Jordan 12892 G 579 579
207 Jordan 12893 G 579 579
208 Jordan 12894 A 579 579
209 Jordan 12895 A 579 579
210 Jordan 12896 C 579 579
211 Jordan 12897 C 579 579
212 Jordan 12898 A 579 579
213 Jordan 12899 C 579 579
214 Jordan 12900 C 579 579
215 Jordan 12901 T 579 579
216 Jordan 12902 T 579 579
217 Jordan 12903 G 579 579
218 Jordan 12904 T 579 579
219 Jordan 12905 A 579 579
220 Jordan 12906 G 579 579
221 Jordan 12907 G 579 579
222 Jordan 12908 T 579 579
223 Jordan 12909 T 579 579
224 Jordan 12910 T 579 579
225 Jordan 12911 G 579 579
226 Jordan 12912 T 579 579
227 Jordan 12913 T 579 579
228 Jordan 12914 A 579 579
229 Jordan 12915 C 579 579
230 Jordan 12916 A 579 579
231 Jordan 12917 G 579 579
232 Jordan 12918 A 579 579
233 Jordan 12919 C 579 579
234 Jordan 12920 A 579 579
235 Jordan 12921 C 579 579
236 Jordan 12922 A 579 579
237 Jordan 12923 C 579 579
238 Jordan 12924 C 579 579
239 Jordan 12925 T 579 579
240 Jordan 12926 A 579 579
241 Jordan 12927 A 579 579
242 Jordan 12928 A 579 579
243 Jordan 12929 G 579 579
244 Jordan 12930 G 579 579
245 Jordan 12931 T 579 579
246 Jordan 12932 C 579 579
247 Jordan 12933 C 579 579
248 Jordan 12934 T 579 579
249 Jordan 12935 A 579 579
250 Jordan 12936 A 579 579
251 Jordan 12937 A 579 579
252 Jordan 12938 G 579 579
253 Jordan 12939 T 579 579
254 Jordan 12940 G 579 579
255 Jordan 12941 A 579 579
256 Jordan 12942 A 579 579
257 Jordan 12943 G 579 579
258 Jordan 12944 T 579 579
259 Jordan 12945 A 579 579
260 Jordan 12946 T 579 579
261 Jordan 12947 T 579 579
262 Jordan 12948 T 579 579
263 Jordan 12949 A G 579 578 Leu4228Leu
264 Jordan 12950 T 579 579
265 Jordan 12951 A 579 579
266 Jordan 12952 C 579 579
267 Jordan 12953 T 579 579
268 Jordan 12954 T 579 579
269 Jordan 12955 T 579 579
270 Jordan 12956 A 579 579
271 Jordan 12957 T 579 579
272 Jordan 12958 T 579 579
273 Jordan 12959 A 579 579
274 Jordan 12960 A 579 579
275 Jordan 12961 A 579 579
276 Jordan 12962 G 579 579
277 Jordan 12963 G 579 579
278 Jordan 12964 A 579 579
279 Jordan 12965 T 579 579
280 Jordan 12966 T 579 579
281 Jordan 12967 A 579 579
282 Jordan 12968 A 579 579
283 Jordan 12969 A 579 579
284 Jordan 12970 C T 579 578 Asn4235Asn
285 Jordan 12971 A 579 579
286 Jordan 12972 A 579 579
287 Jordan 12973 C 579 579
288 Jordan 12974 C 579 579
289 Jordan 12975 T 579 579
290 Jordan 12976 A 579 579
291 Jordan 12977 A 579 579
292 Jordan 12978 A 579 579
293 Jordan 12979 T 579 579
294 Jordan 12980 A 579 579
295 Jordan 12981 G 579 579
296 Jordan 12982 A 579 579
297 Jordan 12983 G 579 579
298 Jordan 12984 G 579 579
299 Jordan 12985 T 579 579
300 Jordan 12986 A 579 579
301 Jordan 12987 T 579 579
302 Jordan 12988 G 579 579
303 Jordan 12989 G 579 579
304 Jordan 12990 T 579 579
305 Jordan 12991 A 579 579
306 Jordan 12992 C 579 579
307 Jordan 12993 T 579 579
308 Jordan 12994 T 579 579
309 Jordan 12995 G 579 579
310 Jordan 12996 G 579 579
311 Jordan 12997 T 579 579
312 Jordan 12998 A 579 579
313 Jordan 12999 G 579 579
314 Jordan 13000 T 579 579
315 Jordan 13001 T 579 579
316 Jordan 13002 T 579 579
317 Jordan 13003 A 579 579
318 Jordan 13004 G 579 579
319 Jordan 13005 C 579 579
320 Jordan 13006 T 579 579
321 Jordan 13007 G 579 579
322 Jordan 13008 C 579 579
323 Jordan 13009 C 579 579
324 Jordan 13010 A 579 579
325 Jordan 13011 C 579 579
326 Jordan 13012 A 579 579
327 Jordan 13013 G 579 579
328 Jordan 13014 T 579 579
329 Jordan 13015 A 579 579
330 Jordan 13016 C 579 579
331 Jordan 13017 G 579 579
332 Jordan 13018 T 579 579
333 Jordan 13019 C 579 579
334 Jordan 13020 T 579 579
335 Jordan 13021 A 579 579
336 Jordan 13022 C 579 579
337 Jordan 13023 A 579 579
338 Jordan 13024 A 579 579