National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30 2                               1 2    
C   9                                        
D   18     4                 1                
E   9                                        
F   12         1                              
G   27           2                            
H                                            
I   6               1                   1    
K   21                 2     1   1 1          
L   45         2         9                    
M   6               1   1             1      
N   21                 1     2       1        
P   18                   4     1     2 1      
Q   12             1             1            
R   18           1     1                      
S   15         1                     1        
T   36               9                 4      
V   18           1   1                        
W   3                                        
Y   15                                       2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Japan 12686 A 17033 17033
1 Japan 12687 A 17033 17033
2 Japan 12688 T 17033 17033
3 Japan 12689 A 17033 17033
4 Japan 12690 A 17033 17033
5 Japan 12691 T 17033 17033
6 Japan 12692 G 17033 17033
7 Japan 12693 A 17033 17033
8 Japan 12694 G 17033 17033
9 Japan 12695 C T 17033 17032 Leu4144Phe
10 Japan 12696 T 17033 17033
11 Japan 12697 T 17033 17033
12 Japan 12698 A 17033 17033
13 Japan 12699 G 17033 17033
14 Japan 12700 T 17033 17033
15 Japan 12701 C 17033 17033
16 Japan 12702 C 17033 17033
17 Japan 12703 T C 17033 17032 Pro4146Pro
18 Japan 12704 G 17033 17033
19 Japan 12705 T G 17033 17032 Val4147Gly
20 Japan 12706 T 17033 17033
21 Japan 12707 G 17033 17033
22 Japan 12708 C T 17033 17031 Ala4148Val
23 Japan 12709 A 17033 17033
24 Japan 12710 C T 17033 17032 Leu4149Leu
25 Japan 12711 T 17033 17033
26 Japan 12712 A 17033 17033
27 Japan 12713 C 17033 17033
28 Japan 12714 G 17033 17033
29 Japan 12715 A 17033 17033
30 Japan 12716 C 17033 17033
31 Japan 12717 A 17033 17033
32 Japan 12718 G 17033 17033
33 Japan 12719 A C 17033 17032 Met4152Leu
34 Japan 12720 T 17033 17033
35 Japan 12721 G 17033 17033
36 Japan 12722 T 17033 17033
37 Japan 12723 C T 17033 17032 Ser4153Phe
38 Japan 12724 T 17033 17033
39 Japan 12725 T 17033 17033
40 Japan 12726 G 17033 17033
41 Japan 12727 T 17033 17033
42 Japan 12728 G 17033 17033
43 Japan 12729 C 17033 17033
44 Japan 12730 T 17033 17033
45 Japan 12731 G 17033 17033
46 Japan 12732 C 17033 17033
47 Japan 12733 C T,A 17033 17026 Ala4156Ala-p.Ala4156Ala
48 Japan 12734 G 17033 17033
49 Japan 12735 G 17033 17033
50 Japan 12736 T 17033 17033
51 Japan 12737 A 17033 17033
52 Japan 12738 C 17033 17033
53 Japan 12739 T 17033 17033
54 Japan 12740 A 17033 17033
55 Japan 12741 C T 17033 17025 Thr4159Ile
56 Japan 12742 A G 17033 17031 Thr4159Thr
57 Japan 12743 C 17033 17033
58 Japan 12744 A 17033 17033
59 Japan 12745 A 17033 17033
60 Japan 12746 A 17032 17032
61 Japan 12747 C T 17032 17031 Thr4161Ile
62 Japan 12748 T A 17032 17028 Thr4161Thr
63 Japan 12749 G A 17032 17031 Ala4162Thr
64 Japan 12750 C T 17032 17020 Ala4162Val
65 Japan 12751 T 17032 17032
66 Japan 12752 T 17032 17032
67 Japan 12753 G 17032 17032
68 Japan 12754 C 17032 17032
69 Japan 12755 A 17032 17032
70 Japan 12756 C T 17032 17030 Thr4164Ile
71 Japan 12757 T 17032 17032
72 Japan 12758 G 17032 17032
73 Japan 12759 A 17032 17032
74 Japan 12760 T C 17032 17031 Asp4165Asp
75 Japan 12761 G 17032 17032
76 Japan 12762 A 17032 17032
77 Japan 12763 C T 17032 17031 Asp4166Asp
78 Japan 12764 A 17032 17032
79 Japan 12765 A 17032 17032
80 Japan 12766 T 17032 17032
81 Japan 12767 G 17032 17032
82 Japan 12768 C 17032 17032
83 Japan 12769 G 17032 17032
84 Japan 12770 T 17032 17032
85 Japan 12771 T 17032 17032
86 Japan 12772 A 17032 17032
87 Japan 12773 G 17032 17032
88 Japan 12774 C 17032 17032
89 Japan 12775 T 17032 17032
90 Japan 12776 T 17032 17032
91 Japan 12777 A 17032 17032
92 Japan 12778 C T 17032 16987 Tyr4171Tyr
93 Japan 12779 T 17032 17032
94 Japan 12780 A 17032 17032
95 Japan 12781 C T 17032 17003 Tyr4172Tyr
96 Japan 12782 A 17032 17032
97 Japan 12783 A 17032 17032
98 Japan 12784 C 17032 17032
99 Japan 12785 A 17032 17032
100 Japan 12786 C T 17032 17015 Thr4174Ile
101 Japan 12787 A 17032 17032
102 Japan 12788 A 17032 17032
103 Japan 12789 C T 17032 17021 Thr4175Ile
104 Japan 12790 A 17032 17032
105 Japan 12791 A 17032 17032
106 Japan 12792 A 17032 17032
107 Japan 12793 G T,A 17032 17008 Lys4176Asn-p.Lys4176Lys
108 Japan 12794 G 17032 17032
109 Japan 12795 G 17032 17032
110 Japan 12796 A 17032 17032
111 Japan 12797 G 17032 17032
112 Japan 12798 G 17032 17032
113 Japan 12799 T 17032 17032
114 Japan 12800 A 17032 17032
115 Japan 12801 G 17032 17032
116 Japan 12802 G 17032 17032
117 Japan 12803 T 17032 17032
118 Japan 12804 T 17032 17032
119 Japan 12805 T 17032 17032
120 Japan 12806 G A 17033 16996 Val4181Ile
121 Japan 12807 T 17033 17033
122 Japan 12808 A 17033 17033
123 Japan 12809 C T 17033 17030 Leu4182Phe
124 Japan 12810 T 17033 17033
125 Japan 12811 T G 17033 17032 Leu4182Leu
126 Japan 12812 G 17033 17033
127 Japan 12813 C 17033 17033
128 Japan 12814 A 17033 17033
129 Japan 12815 C T 17033 17030 Leu4184Leu
130 Japan 12816 T 17033 17033
131 Japan 12817 G 17033 17033
132 Japan 12818 T 17033 17033
133 Japan 12819 T 17033 17033
134 Japan 12820 A G 17033 17019 Leu4185Leu
135 Japan 12821 T 17033 17033
136 Japan 12822 C 17033 17033
137 Japan 12823 C T 17033 17030 Ser4186Ser
138 Japan 12824 G A 17033 17031 Asp4187Asn
139 Japan 12825 A 17033 17033
140 Japan 12826 T 17033 17033
141 Japan 12827 T 17033 17033
142 Japan 12828 T 17033 17033
143 Japan 12829 A 17033 17033
144 Japan 12830 C 17033 17033
145 Japan 12831 A 17033 17033
146 Japan 12832 G T,A 17033 17031 Gln4189His-p.Gln4189Gln
147 Japan 12833 G 17033 17033
148 Japan 12834 A 17033 17033
149 Japan 12835 T 17033 17033
150 Japan 12836 T 17033 17033
151 Japan 12837 T 17033 17033
152 Japan 12838 G 17033 17033
153 Japan 12839 A C 17033 17031 Lys4192Gln
154 Japan 12840 A 17033 17033
155 Japan 12841 A G 17033 17032 Lys4192Lys
156 Japan 12842 T 17033 17033
157 Japan 12843 G 17033 17033
158 Japan 12844 G 17033 17033
159 Japan 12845 G 17033 17033
160 Japan 12846 C 17033 17033
161 Japan 12847 T 17033 17033
162 Japan 12848 A 17033 17033
163 Japan 12849 G 17033 17033
164 Japan 12850 A 17033 17033
165 Japan 12851 T 17033 17033
166 Japan 12852 T 17033 17033
167 Japan 12853 C T 17033 17032 Phe4196Phe
168 Japan 12854 C T 17033 17032 Pro4197Ser
169 Japan 12855 C T 17033 17029 Pro4197Leu
170 Japan 12856 T 17033 17033
171 Japan 12857 A 17033 17033
172 Japan 12858 A G 17033 17032 Lys4198Arg
173 Japan 12859 G 17033 17033
174 Japan 12860 A 17033 17033
175 Japan 12861 G 17033 17033
176 Japan 12862 T 17033 17033
177 Japan 12863 G 17033 17032
178 Japan 12864 A 17033 17032
179 Japan 12865 T C 17033 16981 Asp4200Asp
180 Japan 12866 G 17033 17032
181 Japan 12867 G 17033 17032
182 Japan 12868 A G 17033 17032 Gly4201Gly
183 Japan 12869 A 17033 17033
184 Japan 12870 C 17033 17033
185 Japan 12871 T A 17033 17031 Thr4202Thr
186 Japan 12872 G 17033 17033
187 Japan 12873 G 17033 17033
188 Japan 12874 T 17033 17033
189 Japan 12875 A 17033 17033
190 Japan 12876 C T 17033 17031 Thr4204Ile
191 Japan 12877 T 17033 17033
192 Japan 12878 A G 17033 17020 Ile4205Val
193 Japan 12879 T 17033 17033
194 Japan 12880 C T 17033 17021 Ile4205Ile
195 Japan 12881 T 17033 17033
196 Japan 12882 A 17033 17033
197 Japan 12883 T 17033 17033
198 Japan 12884 A 17033 17033
199 Japan 12885 C T 17033 17031 Thr4207Ile
200 Japan 12886 A G 17033 17032 Thr4207Thr
201 Japan 12887 G 17033 17033
202 Japan 12888 A 17033 17033
203 Japan 12889 A 17033 17033
204 Japan 12890 C T 17033 17028 Leu4209Leu
205 Japan 12891 T 17033 17033
206 Japan 12892 G T 17033 17032 Leu4209Leu
207 Japan 12893 G 17033 17033
208 Japan 12894 A 17033 17033
209 Japan 12895 A 17033 17033
210 Japan 12896 C T,A 17033 17031 Pro4211Ser-p.Pro4211Thr
211 Japan 12897 C T 17033 17032 Pro4211Leu
212 Japan 12898 A 17033 17033
213 Japan 12899 C 17033 17033
214 Japan 12900 C 17033 17033
215 Japan 12901 T 17033 17033
216 Japan 12902 T 17033 17032
217 Japan 12903 G 17033 17032
218 Japan 12904 T 17033 17032
219 Japan 12905 A G 17033 17031 Arg4214Gly
220 Japan 12906 G A 17033 17031 Arg4214Lys
221 Japan 12907 G 17033 17032
222 Japan 12908 T 17033 17032
223 Japan 12909 T 17033 17032
224 Japan 12910 T 17033 17032
225 Japan 12911 G 17033 17032
226 Japan 12912 T 17033 17032
227 Japan 12913 T 17033 17032
228 Japan 12914 A 17033 17032
229 Japan 12915 C T 17033 17032 Thr4217Ile
230 Japan 12916 A 17033 17033
231 Japan 12917 G 17033 17033
232 Japan 12918 A 17033 17032
233 Japan 12919 C T 17033 17030 Asp4218Asp
234 Japan 12920 A 17033 17032
235 Japan 12921 C 17033 17032
236 Japan 12922 A 17033 17032
237 Japan 12923 C 17033 17032
238 Japan 12924 C T 17033 17030 Pro4220Leu
239 Japan 12925 T 17033 17032
240 Japan 12926 A 17033 17032
241 Japan 12927 A 17033 17032
242 Japan 12928 A 17033 17032
243 Japan 12929 G 17033 17032
244 Japan 12930 G 17033 17032
245 Japan 12931 T 17033 17032
246 Japan 12932 C 17033 17032
247 Japan 12933 C T 17033 17030 Pro4223Leu
248 Japan 12934 T 17033 17032
249 Japan 12935 A 17033 17032
250 Japan 12936 A 17033 17032
251 Japan 12937 A 17033 17032
252 Japan 12938 G 17033 17032
253 Japan 12939 T 17033 17032
254 Japan 12940 G 17033 17032
255 Japan 12941 A 17033 17032
256 Japan 12942 A 17033 17032
257 Japan 12943 G 17033 17033
258 Japan 12944 T 17033 17033
259 Japan 12945 A 17033 17033
260 Japan 12946 T 17033 17033
261 Japan 12947 T 17033 17033
262 Japan 12948 T 17033 17033
263 Japan 12949 A 17033 17033
264 Japan 12950 T 17033 17033
265 Japan 12951 A 17033 17033
266 Japan 12952 C 17033 17033
267 Japan 12953 T 17033 17033
268 Japan 12954 T 17033 17033
269 Japan 12955 T 17033 17033
270 Japan 12956 A 17033 17033
271 Japan 12957 T 17033 17033
272 Japan 12958 T 17033 17033
273 Japan 12959 A 17033 17033
274 Japan 12960 A 17033 17033
275 Japan 12961 A 17033 17033
276 Japan 12962 G 17033 17033
277 Japan 12963 G 17033 17033
278 Japan 12964 A G 17033 17028 Gly4233Gly
279 Japan 12965 T 17033 17033
280 Japan 12966 T 17033 17033
281 Japan 12967 A 17033 17033
282 Japan 12968 A 17033 17033
283 Japan 12969 A G 17033 17032 Asn4235Ser
284 Japan 12970 C T 17033 17021 Asn4235Asn
285 Japan 12971 A 17033 17033
286 Japan 12972 A 17033 17033
287 Japan 12973 C T 17033 17032 Asn4236Asn
288 Japan 12974 C T 17033 17025 Leu4237Leu
289 Japan 12975 T 17033 17033
290 Japan 12976 A 17033 17033
291 Japan 12977 A 17033 17033
292 Japan 12978 A 17033 17033
293 Japan 12979 T G 17033 17032 Asn4238Lys
294 Japan 12980 A 17033 17033
295 Japan 12981 G 17033 17033
296 Japan 12982 A 17033 17033
297 Japan 12983 G 17033 17033
298 Japan 12984 G 17033 17033
299 Japan 12985 T 17033 17033
300 Japan 12986 A 17033 17033
301 Japan 12987 T C 17033 17026 Met4241Thr
302 Japan 12988 G T 17033 17029 Met4241Ile
303 Japan 12989 G 17033 17033
304 Japan 12990 T 17033 17033
305 Japan 12991 A 17033 17033
306 Japan 12992 C 17033 17033
307 Japan 12993 T 17033 17033
308 Japan 12994 T 17033 17033
309 Japan 12995 G 17033 17033
310 Japan 12996 G 17033 17033
311 Japan 12997 T 17033 17033
312 Japan 12998 A 17033 17033
313 Japan 12999 G 17033 17033
314 Japan 13000 T 17033 17033
315 Japan 13001 T 17033 17033
316 Japan 13002 T 17033 17033
317 Japan 13003 A G 17033 17032 Leu4246Leu
318 Japan 13004 G 17033 17033
319 Japan 13005 C 17033 17033
320 Japan 13006 T 17033 17033
321 Japan 13007 G 17033 17033
322 Japan 13008 C 17033 17033
323 Japan 13009 C 17033 17033
324 Japan 13010 A 17033 17033
325 Japan 13011 C T 17033 17024 Thr4249Ile
326 Japan 13012 A 17033 17033
327 Japan 13013 G 17033 17033
328 Japan 13014 T 17033 17033
329 Japan 13015 A 17033 17033
330 Japan 13016 C 17033 17033
331 Japan 13017 G 17033 17033
332 Japan 13018 T 17033 17033
333 Japan 13019 C T 17033 17022 Leu4252Leu
334 Japan 13020 T 17033 17033
335 Japan 13021 A 17033 17033
336 Japan 13022 C 17033 17033
337 Japan 13023 A 17033 17033
338 Japan 13024 A 17032 17032