National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45         1                            
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jamaica 12686 A 12 12
1 Jamaica 12687 A 12 12
2 Jamaica 12688 T 12 12
3 Jamaica 12689 A 12 12
4 Jamaica 12690 A 12 12
5 Jamaica 12691 T 12 12
6 Jamaica 12692 G 12 12
7 Jamaica 12693 A 12 12
8 Jamaica 12694 G 12 12
9 Jamaica 12695 C 12 12
10 Jamaica 12696 T 12 12
11 Jamaica 12697 T 12 12
12 Jamaica 12698 A 12 12
13 Jamaica 12699 G 12 12
14 Jamaica 12700 T 12 12
15 Jamaica 12701 C 12 12
16 Jamaica 12702 C 12 12
17 Jamaica 12703 T 12 12
18 Jamaica 12704 G 12 12
19 Jamaica 12705 T 12 12
20 Jamaica 12706 T 12 12
21 Jamaica 12707 G 12 12
22 Jamaica 12708 C 12 12
23 Jamaica 12709 A 12 12
24 Jamaica 12710 C 12 12
25 Jamaica 12711 T 12 12
26 Jamaica 12712 A 12 12
27 Jamaica 12713 C 12 12
28 Jamaica 12714 G 12 12
29 Jamaica 12715 A 12 12
30 Jamaica 12716 C 12 12
31 Jamaica 12717 A 12 12
32 Jamaica 12718 G 12 12
33 Jamaica 12719 A 12 12
34 Jamaica 12720 T 12 12
35 Jamaica 12721 G 12 12
36 Jamaica 12722 T 12 12
37 Jamaica 12723 C 12 12
38 Jamaica 12724 T 12 12
39 Jamaica 12725 T 12 12
40 Jamaica 12726 G 12 12
41 Jamaica 12727 T 12 12
42 Jamaica 12728 G 12 12
43 Jamaica 12729 C 12 12
44 Jamaica 12730 T 12 12
45 Jamaica 12731 G 12 12
46 Jamaica 12732 C 12 12
47 Jamaica 12733 C 13 13
48 Jamaica 12734 G 13 13
49 Jamaica 12735 G 13 13
50 Jamaica 12736 T 13 13
51 Jamaica 12737 A 13 13
52 Jamaica 12738 C 13 13
53 Jamaica 12739 T 13 13
54 Jamaica 12740 A 13 13
55 Jamaica 12741 C 13 13
56 Jamaica 12742 A 13 13
57 Jamaica 12743 C 13 13
58 Jamaica 12744 A 13 13
59 Jamaica 12745 A 13 13
60 Jamaica 12746 A 13 13
61 Jamaica 12747 C 13 13
62 Jamaica 12748 T 13 13
63 Jamaica 12749 G 13 13
64 Jamaica 12750 C 13 13
65 Jamaica 12751 T 13 13
66 Jamaica 12752 T 13 13
67 Jamaica 12753 G 13 13
68 Jamaica 12754 C 13 13
69 Jamaica 12755 A 13 13
70 Jamaica 12756 C 13 13
71 Jamaica 12757 T 13 13
72 Jamaica 12758 G 13 13
73 Jamaica 12759 A 13 13
74 Jamaica 12760 T 13 13
75 Jamaica 12761 G 13 13
76 Jamaica 12762 A 13 13
77 Jamaica 12763 C 13 13
78 Jamaica 12764 A 13 13
79 Jamaica 12765 A 13 13
80 Jamaica 12766 T 13 13
81 Jamaica 12767 G 13 13
82 Jamaica 12768 C 13 13
83 Jamaica 12769 G 13 13
84 Jamaica 12770 T 13 13
85 Jamaica 12771 T 13 13
86 Jamaica 12772 A 13 13
87 Jamaica 12773 G 13 13
88 Jamaica 12774 C 13 13
89 Jamaica 12775 T 13 13
90 Jamaica 12776 T 13 13
91 Jamaica 12777 A 13 13
92 Jamaica 12778 C 13 13
93 Jamaica 12779 T 13 13
94 Jamaica 12780 A 13 13
95 Jamaica 12781 C 13 13
96 Jamaica 12782 A 13 13
97 Jamaica 12783 A 13 13
98 Jamaica 12784 C 13 13
99 Jamaica 12785 A 13 13
100 Jamaica 12786 C 13 13
101 Jamaica 12787 A 13 13
102 Jamaica 12788 A 13 13
103 Jamaica 12789 C 13 13
104 Jamaica 12790 A 13 13
105 Jamaica 12791 A 13 13
106 Jamaica 12792 A 13 13
107 Jamaica 12793 G 13 13
108 Jamaica 12794 G 13 13
109 Jamaica 12795 G 13 13
110 Jamaica 12796 A 13 13
111 Jamaica 12797 G 13 13
112 Jamaica 12798 G 13 13
113 Jamaica 12799 T 13 13
114 Jamaica 12800 A 13 13
115 Jamaica 12801 G 13 13
116 Jamaica 12802 G 13 13
117 Jamaica 12803 T 13 13
118 Jamaica 12804 T 13 13
119 Jamaica 12805 T 13 13
120 Jamaica 12806 G 13 13
121 Jamaica 12807 T 13 13
122 Jamaica 12808 A 13 13
123 Jamaica 12809 C T 13 12 Leu4182Phe
124 Jamaica 12810 T 13 13
125 Jamaica 12811 T 13 13
126 Jamaica 12812 G 13 13
127 Jamaica 12813 C 13 13
128 Jamaica 12814 A 13 13
129 Jamaica 12815 C 13 13
130 Jamaica 12816 T 13 13
131 Jamaica 12817 G 13 13
132 Jamaica 12818 T 13 13
133 Jamaica 12819 T 13 13
134 Jamaica 12820 A 13 13
135 Jamaica 12821 T 13 13
136 Jamaica 12822 C 13 13
137 Jamaica 12823 C 13 13
138 Jamaica 12824 G 13 13
139 Jamaica 12825 A 13 13
140 Jamaica 12826 T 13 13
141 Jamaica 12827 T 13 13
142 Jamaica 12828 T 13 13
143 Jamaica 12829 A 13 13
144 Jamaica 12830 C 13 13
145 Jamaica 12831 A 13 13
146 Jamaica 12832 G 13 13
147 Jamaica 12833 G 13 13
148 Jamaica 12834 A 13 13
149 Jamaica 12835 T 13 13
150 Jamaica 12836 T 13 13
151 Jamaica 12837 T 13 13
152 Jamaica 12838 G 13 13
153 Jamaica 12839 A 13 13
154 Jamaica 12840 A 13 13
155 Jamaica 12841 A 13 13
156 Jamaica 12842 T 13 13
157 Jamaica 12843 G 13 13
158 Jamaica 12844 G 13 13
159 Jamaica 12845 G 13 13
160 Jamaica 12846 C 13 13
161 Jamaica 12847 T 13 13
162 Jamaica 12848 A 13 13
163 Jamaica 12849 G 13 13
164 Jamaica 12850 A 13 13
165 Jamaica 12851 T 13 13
166 Jamaica 12852 T 13 13
167 Jamaica 12853 C 13 13
168 Jamaica 12854 C 13 13
169 Jamaica 12855 C 13 13
170 Jamaica 12856 T 13 13
171 Jamaica 12857 A 13 13
172 Jamaica 12858 A 13 13
173 Jamaica 12859 G 13 13
174 Jamaica 12860 A 13 13
175 Jamaica 12861 G 13 13
176 Jamaica 12862 T 13 13
177 Jamaica 12863 G 13 13
178 Jamaica 12864 A 13 13
179 Jamaica 12865 T 13 13
180 Jamaica 12866 G 13 13
181 Jamaica 12867 G 13 13
182 Jamaica 12868 A 13 13
183 Jamaica 12869 A 13 13
184 Jamaica 12870 C 13 13
185 Jamaica 12871 T 13 13
186 Jamaica 12872 G 13 13
187 Jamaica 12873 G 13 13
188 Jamaica 12874 T 13 13
189 Jamaica 12875 A 13 13
190 Jamaica 12876 C 13 13
191 Jamaica 12877 T 13 13
192 Jamaica 12878 A 13 13
193 Jamaica 12879 T 13 13
194 Jamaica 12880 C 13 13
195 Jamaica 12881 T 13 13
196 Jamaica 12882 A 13 13
197 Jamaica 12883 T 13 13
198 Jamaica 12884 A 13 13
199 Jamaica 12885 C 13 13
200 Jamaica 12886 A 13 13
201 Jamaica 12887 G 13 13
202 Jamaica 12888 A 13 13
203 Jamaica 12889 A 13 13
204 Jamaica 12890 C 13 13
205 Jamaica 12891 T 13 13
206 Jamaica 12892 G 13 13
207 Jamaica 12893 G 13 13
208 Jamaica 12894 A 13 13
209 Jamaica 12895 A 13 13
210 Jamaica 12896 C 13 13
211 Jamaica 12897 C 13 13
212 Jamaica 12898 A 13 13
213 Jamaica 12899 C 13 13
214 Jamaica 12900 C 13 13
215 Jamaica 12901 T 13 13
216 Jamaica 12902 T 13 13
217 Jamaica 12903 G 13 13
218 Jamaica 12904 T 13 13
219 Jamaica 12905 A 13 13
220 Jamaica 12906 G 13 13
221 Jamaica 12907 G 13 13
222 Jamaica 12908 T 13 13
223 Jamaica 12909 T 13 13
224 Jamaica 12910 T 13 13
225 Jamaica 12911 G 13 13
226 Jamaica 12912 T 13 13
227 Jamaica 12913 T 13 13
228 Jamaica 12914 A 13 13
229 Jamaica 12915 C 13 13
230 Jamaica 12916 A 13 13
231 Jamaica 12917 G 13 13
232 Jamaica 12918 A 13 13
233 Jamaica 12919 C 13 13
234 Jamaica 12920 A 13 13
235 Jamaica 12921 C 13 13
236 Jamaica 12922 A 13 13
237 Jamaica 12923 C 13 13
238 Jamaica 12924 C 13 13
239 Jamaica 12925 T 13 13
240 Jamaica 12926 A 13 13
241 Jamaica 12927 A 13 13
242 Jamaica 12928 A 13 13
243 Jamaica 12929 G 13 13
244 Jamaica 12930 G 13 13
245 Jamaica 12931 T 13 13
246 Jamaica 12932 C 13 13
247 Jamaica 12933 C 13 13
248 Jamaica 12934 T 13 13
249 Jamaica 12935 A 13 13
250 Jamaica 12936 A 13 13
251 Jamaica 12937 A 13 13
252 Jamaica 12938 G 13 13
253 Jamaica 12939 T 13 13
254 Jamaica 12940 G 13 13
255 Jamaica 12941 A 13 13
256 Jamaica 12942 A 13 13
257 Jamaica 12943 G 13 13
258 Jamaica 12944 T 13 13
259 Jamaica 12945 A 13 13
260 Jamaica 12946 T 13 13
261 Jamaica 12947 T 13 13
262 Jamaica 12948 T 13 13
263 Jamaica 12949 A 13 13
264 Jamaica 12950 T 13 13
265 Jamaica 12951 A 13 13
266 Jamaica 12952 C 13 13
267 Jamaica 12953 T 13 13
268 Jamaica 12954 T 13 13
269 Jamaica 12955 T 13 13
270 Jamaica 12956 A 13 13
271 Jamaica 12957 T 13 13
272 Jamaica 12958 T 13 13
273 Jamaica 12959 A 13 13
274 Jamaica 12960 A 13 13
275 Jamaica 12961 A 13 13
276 Jamaica 12962 G 13 13
277 Jamaica 12963 G 13 13
278 Jamaica 12964 A 13 13
279 Jamaica 12965 T 13 13
280 Jamaica 12966 T 13 13
281 Jamaica 12967 A 13 13
282 Jamaica 12968 A 13 13
283 Jamaica 12969 A 13 13
284 Jamaica 12970 C 13 13
285 Jamaica 12971 A 13 13
286 Jamaica 12972 A 13 13
287 Jamaica 12973 C 13 13
288 Jamaica 12974 C 13 13
289 Jamaica 12975 T 13 13
290 Jamaica 12976 A 13 13
291 Jamaica 12977 A 13 13
292 Jamaica 12978 A 13 13
293 Jamaica 12979 T 13 13
294 Jamaica 12980 A 13 13
295 Jamaica 12981 G 13 13
296 Jamaica 12982 A 13 13
297 Jamaica 12983 G 13 13
298 Jamaica 12984 G 13 13
299 Jamaica 12985 T 13 13
300 Jamaica 12986 A 13 13
301 Jamaica 12987 T 13 13
302 Jamaica 12988 G 13 13
303 Jamaica 12989 G 13 13
304 Jamaica 12990 T 13 13
305 Jamaica 12991 A 13 13
306 Jamaica 12992 C 13 13
307 Jamaica 12993 T 13 13
308 Jamaica 12994 T 13 13
309 Jamaica 12995 G 13 13
310 Jamaica 12996 G 13 13
311 Jamaica 12997 T 13 13
312 Jamaica 12998 A 13 13
313 Jamaica 12999 G 13 13
314 Jamaica 13000 T 13 13
315 Jamaica 13001 T 13 13
316 Jamaica 13002 T 13 13
317 Jamaica 13003 A 13 13
318 Jamaica 13004 G 13 13
319 Jamaica 13005 C 13 13
320 Jamaica 13006 T 13 13
321 Jamaica 13007 G 13 13
322 Jamaica 13008 C 13 13
323 Jamaica 13009 C 13 13
324 Jamaica 13010 A 13 13
325 Jamaica 13011 C 13 13
326 Jamaica 13012 A 13 13
327 Jamaica 13013 G 13 13
328 Jamaica 13014 T 13 13
329 Jamaica 13015 A 13 13
330 Jamaica 13016 C 13 13
331 Jamaica 13017 G 13 13
332 Jamaica 13018 T 13 13
333 Jamaica 13019 C 13 13
334 Jamaica 13020 T 13 13
335 Jamaica 13021 A 13 13
336 Jamaica 13022 C 13 13
337 Jamaica 13023 A 13 13
338 Jamaica 13024 A 13 13