National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30 3                                 1    
C   9   1     1                              
D   18           1           1                
E   9                                        
F   12                                        
G   27       1   1                       1    
H                                            
I   6                                        
K   21                       1     1          
L   45         1         7                    
M   6               1                        
N   21                       1                
P   18                   1     2     1        
Q   12                                        
R   18           1       1                    
S   15                               1        
T   36 1             6                 2      
V   18 2                                 1    
W   3                                        
Y   15             1                         3

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Italy 12686 A 2958 2958
1 Italy 12687 A 2958 2958
2 Italy 12688 T 2958 2958
3 Italy 12689 A 2958 2958
4 Italy 12690 A 2958 2958
5 Italy 12691 T 2958 2958
6 Italy 12692 G 2958 2956
7 Italy 12693 A 2958 2958
8 Italy 12694 G 2958 2958
9 Italy 12695 C 2958 2958
10 Italy 12696 T 2958 2958
11 Italy 12697 T C 2958 2954 Leu4144Leu
12 Italy 12698 A 2958 2958
13 Italy 12699 G 2958 2958
14 Italy 12700 T 2958 2958
15 Italy 12701 C 2958 2958
16 Italy 12702 C 2958 2958
17 Italy 12703 T C 2958 2955 Pro4146Pro
18 Italy 12704 G 2958 2958
19 Italy 12705 T C 2958 2957 Val4147Ala
20 Italy 12706 T 2958 2958
21 Italy 12707 G 2958 2958
22 Italy 12708 C 2958 2958
23 Italy 12709 A 2958 2958
24 Italy 12710 C 2958 2958
25 Italy 12711 T 2958 2958
26 Italy 12712 A 2958 2958
27 Italy 12713 C G 2958 2957 Arg4150Gly
28 Italy 12714 G T 2958 2957 Arg4150Leu
29 Italy 12715 A 2958 2958
30 Italy 12716 C 2959 2959
31 Italy 12717 A 2959 2959
32 Italy 12718 G 2959 2959
33 Italy 12719 A 2959 2959
34 Italy 12720 T 2959 2959
35 Italy 12721 G 2959 2958
36 Italy 12722 T 2959 2958
37 Italy 12723 C 2959 2958
38 Italy 12724 T 2959 2958
39 Italy 12725 T 2959 2958
40 Italy 12726 G 2959 2958
41 Italy 12727 T 2959 2958
42 Italy 12728 G 2959 2958
43 Italy 12729 C 2959 2958
44 Italy 12730 T 2959 2958
45 Italy 12731 G 2959 2958
46 Italy 12732 C 2959 2958
47 Italy 12733 C 2959 2957
48 Italy 12734 G 2959 2957
49 Italy 12735 G 2959 2957
50 Italy 12736 T 2959 2957
51 Italy 12737 A 2959 2957
52 Italy 12738 C 2959 2958
53 Italy 12739 T 2959 2958
54 Italy 12740 A 2959 2958
55 Italy 12741 C 2959 2958
56 Italy 12742 A 2959 2958
57 Italy 12743 C 2959 2958
58 Italy 12744 A 2959 2958
59 Italy 12745 A 2959 2958
60 Italy 12746 A 2959 2958
61 Italy 12747 C T 2959 2957 Thr4161Ile
62 Italy 12748 T 2959 2959
63 Italy 12749 G 2959 2959
64 Italy 12750 C 2959 2959
65 Italy 12751 T 2959 2959
66 Italy 12752 T 2959 2959
67 Italy 12753 G 2959 2959
68 Italy 12754 C T 2959 2956 Cys4163Cys
69 Italy 12755 A G 2959 2958 Thr4164Ala
70 Italy 12756 C 2959 2959
71 Italy 12757 T C 2959 2952 Thr4164Thr
72 Italy 12758 G A 2959 2958 Asp4165Asn
73 Italy 12759 A 2959 2959
74 Italy 12760 T 2960 2960
75 Italy 12761 G 2960 2960
76 Italy 12762 A 2960 2960
77 Italy 12763 C 2960 2960
78 Italy 12764 A 2960 2960
79 Italy 12765 A 2960 2960
80 Italy 12766 T 2960 2960
81 Italy 12767 G 2960 2960
82 Italy 12768 C 2960 2960
83 Italy 12769 G T 2960 2866 Ala4168Ala
84 Italy 12770 T 2960 2960
85 Italy 12771 T 2960 2960
86 Italy 12772 A 2960 2960
87 Italy 12773 G 2960 2960
88 Italy 12774 C T 2960 2959 Ala4170Val
89 Italy 12775 T 2960 2960
90 Italy 12776 T 2960 2960
91 Italy 12777 A 2960 2960
92 Italy 12778 C T 2960 2957 Tyr4171Tyr
93 Italy 12779 T 2960 2960
94 Italy 12780 A 2960 2960
95 Italy 12781 C T 2960 2958 Tyr4172Tyr
96 Italy 12782 A 2960 2957
97 Italy 12783 A 2960 2959
98 Italy 12784 C 2960 2959
99 Italy 12785 A 2960 2957
100 Italy 12786 C 2960 2959
101 Italy 12787 A 2960 2959
102 Italy 12788 A 2960 2959
103 Italy 12789 C T 2960 2957 Thr4175Ile
104 Italy 12790 A G 2960 2956 Thr4175Thr
105 Italy 12791 A 2960 2959
106 Italy 12792 A G 2960 2957 Lys4176Arg
107 Italy 12793 G 2960 2959
108 Italy 12794 G 2960 2959
109 Italy 12795 G 2960 2959
110 Italy 12796 A 2960 2959
111 Italy 12797 G 2960 2959
112 Italy 12798 G T 2960 2957 Gly4178Val
113 Italy 12799 T 2960 2959
114 Italy 12800 A 2960 2957
115 Italy 12801 G 2960 2957
116 Italy 12802 G 2959 2956
117 Italy 12803 T 2959 2956
118 Italy 12804 T 2959 2956
119 Italy 12805 T 2959 2956
120 Italy 12806 G 2959 2957
121 Italy 12807 T 2959 2957
122 Italy 12808 A 2959 2956
123 Italy 12809 C T 2959 2954 Leu4182Phe
124 Italy 12810 T 2959 2956
125 Italy 12811 T 2959 2956
126 Italy 12812 G 2959 2956
127 Italy 12813 C 2959 2956
128 Italy 12814 A 2959 2956
129 Italy 12815 C 2959 2956
130 Italy 12816 T 2959 2956
131 Italy 12817 G 2960 2957
132 Italy 12818 T 2962 2959
133 Italy 12819 T 2962 2961
134 Italy 12820 A G 2962 2960 Leu4185Leu
135 Italy 12821 T 2962 2961
136 Italy 12822 C 2962 2961
137 Italy 12823 C T 2962 2960 Ser4186Ser
138 Italy 12824 G 2962 2961
139 Italy 12825 A G 2962 2959 Asp4187Gly
140 Italy 12826 T 2963 2962
141 Italy 12827 T 2963 2961
142 Italy 12828 T 2963 2961
143 Italy 12829 A 2963 2963
144 Italy 12830 C 2963 2963
145 Italy 12831 A 2963 2963
146 Italy 12832 G 2963 2963
147 Italy 12833 G 2963 2963
148 Italy 12834 A 2963 2963
149 Italy 12835 T 2963 2963
150 Italy 12836 T 2963 2963
151 Italy 12837 T 2963 2963
152 Italy 12838 G 2963 2963
153 Italy 12839 A 2963 2963
154 Italy 12840 A 2963 2963
155 Italy 12841 A 2963 2963
156 Italy 12842 T 2963 2963
157 Italy 12843 G 2963 2963
158 Italy 12844 G 2963 2963
159 Italy 12845 G 2963 2963
160 Italy 12846 C 2963 2963
161 Italy 12847 T 2963 2963
162 Italy 12848 A 2963 2963
163 Italy 12849 G 2963 2963
164 Italy 12850 A 2963 2963
165 Italy 12851 T 2963 2963
166 Italy 12852 T 2963 2963
167 Italy 12853 C 2963 2963
168 Italy 12854 C 2963 2963
169 Italy 12855 C 2963 2963
170 Italy 12856 T C 2963 2962 Pro4197Pro
171 Italy 12857 A 2963 2963
172 Italy 12858 A 2963 2963
173 Italy 12859 G 2963 2963
174 Italy 12860 A 2963 2963
175 Italy 12861 G 2963 2963
176 Italy 12862 T 2963 2963
177 Italy 12863 G 2963 2963
178 Italy 12864 A 2963 2963
179 Italy 12865 T 2963 2963
180 Italy 12866 G 2963 2963
181 Italy 12867 G A 2963 2961 Gly4201Glu
182 Italy 12868 A 2963 2963
183 Italy 12869 A 2963 2963
184 Italy 12870 C 2963 2963
185 Italy 12871 T 2963 2963
186 Italy 12872 G 2963 2963
187 Italy 12873 G 2963 2963
188 Italy 12874 T 2963 2963
189 Italy 12875 A 2963 2963
190 Italy 12876 C T 2963 2962 Thr4204Ile
191 Italy 12877 T 2963 2963
192 Italy 12878 A 2963 2963
193 Italy 12879 T 2963 2963
194 Italy 12880 C 2963 2963
195 Italy 12881 T C 2963 2962 Tyr4206His
196 Italy 12882 A 2963 2963
197 Italy 12883 T 2963 2963
198 Italy 12884 A 2963 2963
199 Italy 12885 C T 2963 2961 Thr4207Ile
200 Italy 12886 A 2963 2963
201 Italy 12887 G 2963 2963
202 Italy 12888 A 2963 2963
203 Italy 12889 A 2963 2963
204 Italy 12890 C T 2963 2959 Leu4209Leu
205 Italy 12891 T 2963 2963
206 Italy 12892 G T 2963 2962 Leu4209Leu
207 Italy 12893 G 2963 2963
208 Italy 12894 A 2963 2963
209 Italy 12895 A 2963 2963
210 Italy 12896 C 2963 2963
211 Italy 12897 C 2963 2963
212 Italy 12898 A 2963 2963
213 Italy 12899 C 2963 2963
214 Italy 12900 C 2963 2963
215 Italy 12901 T 2963 2963
216 Italy 12902 T 2963 2963
217 Italy 12903 G T 2963 2962 Cys4213Phe
218 Italy 12904 T 2963 2963
219 Italy 12905 A 2963 2963
220 Italy 12906 G 2963 2963
221 Italy 12907 G 2963 2963
222 Italy 12908 T 2963 2963
223 Italy 12909 T 2963 2963
224 Italy 12910 T 2963 2963
225 Italy 12911 G 2963 2963
226 Italy 12912 T C 2963 2961 Val4216Ala
227 Italy 12913 T C 2963 2961 Val4216Val
228 Italy 12914 A 2963 2962
229 Italy 12915 C T 2963 2959 Thr4217Ile
230 Italy 12916 A 2963 2962
231 Italy 12917 G 2963 2962
232 Italy 12918 A 2963 2962
233 Italy 12919 C 2963 2962
234 Italy 12920 A 2963 2962
235 Italy 12921 C 2963 2962
236 Italy 12922 A 2963 2962
237 Italy 12923 C T 2963 2962 Pro4220Ser
238 Italy 12924 C T 2963 2958 Pro4220Leu
239 Italy 12925 T 2963 2963
240 Italy 12926 A 2963 2963
241 Italy 12927 A 2963 2963
242 Italy 12928 A 2963 2963
243 Italy 12929 G 2963 2963
244 Italy 12930 G 2963 2963
245 Italy 12931 T 2963 2963
246 Italy 12932 C 2963 2963
247 Italy 12933 C 2963 2963
248 Italy 12934 T 2963 2963
249 Italy 12935 A 2963 2963
250 Italy 12936 A 2963 2963
251 Italy 12937 A 2963 2963
252 Italy 12938 G 2963 2963
253 Italy 12939 T 2963 2963
254 Italy 12940 G 2963 2963
255 Italy 12941 A 2963 2963
256 Italy 12942 A 2963 2963
257 Italy 12943 G T 2963 2962 Lys4226Asn
258 Italy 12944 T 2963 2963
259 Italy 12945 A 2963 2963
260 Italy 12946 T 2963 2963
261 Italy 12947 T 2963 2963
262 Italy 12948 T 2963 2963
263 Italy 12949 A 2963 2963
264 Italy 12950 T 2963 2963
265 Italy 12951 A 2963 2963
266 Italy 12952 C T 2963 2962 Tyr4229Tyr
267 Italy 12953 T 2963 2963
268 Italy 12954 T 2963 2963
269 Italy 12955 T 2963 2963
270 Italy 12956 A 2963 2963
271 Italy 12957 T 2963 2963
272 Italy 12958 T 2963 2963
273 Italy 12959 A 2963 2963
274 Italy 12960 A 2963 2963
275 Italy 12961 A 2963 2963
276 Italy 12962 G 2963 2963
277 Italy 12963 G 2963 2963
278 Italy 12964 A G 2963 2961 Gly4233Gly
279 Italy 12965 T 2963 2963
280 Italy 12966 T 2963 2963
281 Italy 12967 A 2963 2963
282 Italy 12968 A 2963 2963
283 Italy 12969 A 2963 2963
284 Italy 12970 C T 2963 2960 Asn4235Asn
285 Italy 12971 A 2963 2963
286 Italy 12972 A 2963 2963
287 Italy 12973 C 2963 2963
288 Italy 12974 C T 2963 2962 Leu4237Leu
289 Italy 12975 T 2963 2963
290 Italy 12976 A 2963 2963
291 Italy 12977 A 2963 2963
292 Italy 12978 A 2963 2963
293 Italy 12979 T 2963 2963
294 Italy 12980 A 2963 2963
295 Italy 12981 G 2963 2963
296 Italy 12982 A 2963 2963
297 Italy 12983 G 2963 2963
298 Italy 12984 G 2963 2963
299 Italy 12985 T 2963 2963
300 Italy 12986 A 2963 2963
301 Italy 12987 T 2963 2963
302 Italy 12988 G T 2963 2942 Met4241Ile
303 Italy 12989 G 2963 2963
304 Italy 12990 T 2963 2963
305 Italy 12991 A 2963 2963
306 Italy 12992 C 2963 2963
307 Italy 12993 T 2963 2963
308 Italy 12994 T 2963 2963
309 Italy 12995 G 2963 2963
310 Italy 12996 G 2963 2963
311 Italy 12997 T 2963 2963
312 Italy 12998 A 2963 2963
313 Italy 12999 G 2963 2963
314 Italy 13000 T 2963 2963
315 Italy 13001 T 2963 2963
316 Italy 13002 T 2963 2963
317 Italy 13003 A G 2963 2962 Leu4246Leu
318 Italy 13004 G 2963 2963
319 Italy 13005 C 2963 2963
320 Italy 13006 T C 2963 2962 Ala4247Ala
321 Italy 13007 G 2963 2963
322 Italy 13008 C 2963 2963
323 Italy 13009 C T 2963 2962 Ala4248Ala
324 Italy 13010 A 2963 2963
325 Italy 13011 C T 2963 2959 Thr4249Ile
326 Italy 13012 A 2961 2961
327 Italy 13013 G 2961 2961
328 Italy 13014 T 2961 2961
329 Italy 13015 A 2961 2961
330 Italy 13016 C 2961 2961
331 Italy 13017 G 2961 2961
332 Italy 13018 T 2961 2961
333 Italy 13019 C T 2961 2950 Leu4252Leu
334 Italy 13020 T 2961 2961
335 Italy 13021 A 2961 2961
336 Italy 13022 C 2961 2961
337 Italy 13023 A 2961 2961
338 Italy 13024 A 2961 2961