National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 1                             1      
C   9   1                                  
D   18           1         1           1    
E   9                                      
F   12         1                            
G   27   1       2                          
I   6                                      
K   21                                      
L   45         1                            
M   6             1                        
N   21                     2                
P   18                 3           1        
Q   12                         1            
R   18                           1          
S   15                                      
T   36 1           3                 1      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Ireland 12686 A 1971 1971
1 Ireland 12687 A 1971 1971
2 Ireland 12688 T 1971 1971
3 Ireland 12689 A 1971 1971
4 Ireland 12690 A 1971 1971
5 Ireland 12691 T 1971 1971
6 Ireland 12692 G 1971 1971
7 Ireland 12693 A 1971 1971
8 Ireland 12694 G 1971 1971
9 Ireland 12695 C 1971 1971
10 Ireland 12696 T 1971 1971
11 Ireland 12697 T 1971 1971
12 Ireland 12698 A 1971 1971
13 Ireland 12699 G 1971 1971
14 Ireland 12700 T 1971 1971
15 Ireland 12701 C 1971 1971
16 Ireland 12702 C 1971 1971
17 Ireland 12703 T 1971 1971
18 Ireland 12704 G 1971 1971
19 Ireland 12705 T 1971 1971
20 Ireland 12706 T 1971 1971
21 Ireland 12707 G 1971 1971
22 Ireland 12708 C 1971 1971
23 Ireland 12709 A C 1971 1968 Ala4148Ala
24 Ireland 12710 C 1971 1971
25 Ireland 12711 T 1971 1971
26 Ireland 12712 A 1971 1971
27 Ireland 12713 C 1971 1971
28 Ireland 12714 G 1971 1971
29 Ireland 12715 A 1971 1971
30 Ireland 12716 C 1971 1971
31 Ireland 12717 A 1971 1971
32 Ireland 12718 G 1971 1971
33 Ireland 12719 A 1971 1971
34 Ireland 12720 T 1971 1971
35 Ireland 12721 G 1971 1971
36 Ireland 12722 T 1971 1971
37 Ireland 12723 C 1971 1971
38 Ireland 12724 T 1971 1971
39 Ireland 12725 T 1971 1971
40 Ireland 12726 G 1971 1971
41 Ireland 12727 T 1971 1971
42 Ireland 12728 G 1971 1971
43 Ireland 12729 C 1971 1971
44 Ireland 12730 T 1971 1971
45 Ireland 12731 G 1971 1971
46 Ireland 12732 C 1971 1971
47 Ireland 12733 C 1973 1973
48 Ireland 12734 G 1973 1973
49 Ireland 12735 G 1973 1973
50 Ireland 12736 T 1973 1973
51 Ireland 12737 A 1973 1973
52 Ireland 12738 C 1973 1973
53 Ireland 12739 T C 1973 1972 Thr4158Thr
54 Ireland 12740 A 1973 1973
55 Ireland 12741 C T 1973 1971 Thr4159Ile
56 Ireland 12742 A 1973 1973
57 Ireland 12743 C 1973 1973
58 Ireland 12744 A 1973 1973
59 Ireland 12745 A G 1973 1972 Gln4160Gln
60 Ireland 12746 A 1973 1973
61 Ireland 12747 C T 1973 1959 Thr4161Ile
62 Ireland 12748 T 1973 1973
63 Ireland 12749 G A 1973 1972 Ala4162Thr
64 Ireland 12750 C 1973 1973
65 Ireland 12751 T 1973 1973
66 Ireland 12752 T 1973 1973
67 Ireland 12753 G 1973 1973
68 Ireland 12754 C T 1973 1972 Cys4163Cys
69 Ireland 12755 A 1973 1973
70 Ireland 12756 C 1973 1973
71 Ireland 12757 T 1973 1973
72 Ireland 12758 G 1973 1973
73 Ireland 12759 A T,G 1973 1970 Asp4165Val-p.Asp4165Gly
74 Ireland 12760 T 1973 1973
75 Ireland 12761 G A 1973 1967 Asp4166Asn
76 Ireland 12762 A 1973 1973
77 Ireland 12763 C 1973 1973
78 Ireland 12764 A 1973 1973
79 Ireland 12765 A 1973 1973
80 Ireland 12766 T C 1973 1970 Asn4167Asn
81 Ireland 12767 G 1973 1973
82 Ireland 12768 C 1973 1973
83 Ireland 12769 G 1973 1973
84 Ireland 12770 T 1973 1973
85 Ireland 12771 T 1973 1973
86 Ireland 12772 A 1973 1973
87 Ireland 12773 G 1973 1973
88 Ireland 12774 C 1973 1973
89 Ireland 12775 T 1973 1973
90 Ireland 12776 T 1973 1973
91 Ireland 12777 A 1973 1973
92 Ireland 12778 C 1973 1973
93 Ireland 12779 T 1973 1973
94 Ireland 12780 A 1972 1972
95 Ireland 12781 C 1972 1972
96 Ireland 12782 A 1972 1972
97 Ireland 12783 A 1972 1972
98 Ireland 12784 C 1972 1972
99 Ireland 12785 A 1972 1972
100 Ireland 12786 C 1972 1972
101 Ireland 12787 A 1972 1972
102 Ireland 12788 A 1972 1972
103 Ireland 12789 C 1972 1972
104 Ireland 12790 A 1972 1972
105 Ireland 12791 A 1972 1972
106 Ireland 12792 A 1972 1972
107 Ireland 12793 G 1972 1972
108 Ireland 12794 G 1972 1972
109 Ireland 12795 G 1972 1972
110 Ireland 12796 A 1972 1972
111 Ireland 12797 G T 1972 1971 Gly4178Cys
112 Ireland 12798 G 1972 1972
113 Ireland 12799 T 1972 1972
114 Ireland 12800 A 1972 1972
115 Ireland 12801 G 1972 1972
116 Ireland 12802 G 1972 1972
117 Ireland 12803 T 1972 1972
118 Ireland 12804 T 1972 1972
119 Ireland 12805 T C 1972 1971 Phe4180Phe
120 Ireland 12806 G 1972 1972
121 Ireland 12807 T 1972 1972
122 Ireland 12808 A 1972 1972
123 Ireland 12809 C T 1972 1969 Leu4182Phe
124 Ireland 12810 T 1972 1972
125 Ireland 12811 T 1972 1972
126 Ireland 12812 G 1972 1972
127 Ireland 12813 C 1972 1972
128 Ireland 12814 A 1972 1972
129 Ireland 12815 C 1972 1972
130 Ireland 12816 T 1972 1972
131 Ireland 12817 G 1972 1972
132 Ireland 12818 T 1972 1972
133 Ireland 12819 T 1972 1972
134 Ireland 12820 A 1972 1972
135 Ireland 12821 T 1972 1972
136 Ireland 12822 C 1972 1972
137 Ireland 12823 C 1972 1972
138 Ireland 12824 G 1972 1972
139 Ireland 12825 A 1972 1972
140 Ireland 12826 T 1972 1972
141 Ireland 12827 T 1972 1972
142 Ireland 12828 T 1972 1972
143 Ireland 12829 A 1972 1972
144 Ireland 12830 C 1972 1972
145 Ireland 12831 A 1972 1972
146 Ireland 12832 G 1972 1972
147 Ireland 12833 G 1972 1972
148 Ireland 12834 A 1972 1972
149 Ireland 12835 T 1972 1972
150 Ireland 12836 T 1972 1972
151 Ireland 12837 T 1972 1972
152 Ireland 12838 G 1972 1972
153 Ireland 12839 A 1972 1972
154 Ireland 12840 A 1972 1972
155 Ireland 12841 A 1972 1972
156 Ireland 12842 T 1972 1972
157 Ireland 12843 G 1972 1972
158 Ireland 12844 G 1972 1972
159 Ireland 12845 G 1972 1972
160 Ireland 12846 C 1972 1972
161 Ireland 12847 T 1972 1972
162 Ireland 12848 A 1972 1972
163 Ireland 12849 G 1972 1972
164 Ireland 12850 A 1972 1972
165 Ireland 12851 T 1972 1972
166 Ireland 12852 T 1972 1972
167 Ireland 12853 C 1972 1972
168 Ireland 12854 C T 1972 1967 Pro4197Ser
169 Ireland 12855 C T 1972 1970 Pro4197Leu
170 Ireland 12856 T 1972 1972
171 Ireland 12857 A 1972 1972
172 Ireland 12858 A 1972 1972
173 Ireland 12859 G 1972 1972
174 Ireland 12860 A 1972 1972
175 Ireland 12861 G 1972 1972
176 Ireland 12862 T 1972 1972
177 Ireland 12863 G 1972 1972
178 Ireland 12864 A 1972 1972
179 Ireland 12865 T 1972 1972
180 Ireland 12866 G 1972 1972
181 Ireland 12867 G 1972 1972
182 Ireland 12868 A 1972 1972
183 Ireland 12869 A 1972 1972
184 Ireland 12870 C 1972 1972
185 Ireland 12871 T 1972 1972
186 Ireland 12872 G 1972 1972
187 Ireland 12873 G 1972 1972
188 Ireland 12874 T 1972 1972
189 Ireland 12875 A G 1972 1967 Thr4204Ala
190 Ireland 12876 C 1972 1972
191 Ireland 12877 T 1972 1972
192 Ireland 12878 A 1972 1972
193 Ireland 12879 T 1972 1972
194 Ireland 12880 C 1972 1972
195 Ireland 12881 T 1972 1972
196 Ireland 12882 A 1972 1972
197 Ireland 12883 T 1972 1972
198 Ireland 12884 A 1972 1972
199 Ireland 12885 C T 1972 1971 Thr4207Ile
200 Ireland 12886 A 1972 1971
201 Ireland 12887 G 1972 1972
202 Ireland 12888 A 1972 1972
203 Ireland 12889 A 1972 1972
204 Ireland 12890 C 1972 1972
205 Ireland 12891 T 1972 1972
206 Ireland 12892 G 1972 1972
207 Ireland 12893 G 1972 1972
208 Ireland 12894 A 1972 1972
209 Ireland 12895 A 1972 1972
210 Ireland 12896 C 1972 1972
211 Ireland 12897 C 1972 1972
212 Ireland 12898 A 1972 1972
213 Ireland 12899 C 1972 1972
214 Ireland 12900 C 1972 1972
215 Ireland 12901 T 1972 1972
216 Ireland 12902 T 1972 1972
217 Ireland 12903 G 1972 1972
218 Ireland 12904 T 1972 1972
219 Ireland 12905 A 1972 1972
220 Ireland 12906 G 1972 1972
221 Ireland 12907 G 1972 1972
222 Ireland 12908 T 1972 1972
223 Ireland 12909 T 1972 1972
224 Ireland 12910 T 1972 1972
225 Ireland 12911 G 1972 1972
226 Ireland 12912 T 1972 1972
227 Ireland 12913 T 1972 1972
228 Ireland 12914 A 1972 1972
229 Ireland 12915 C 1972 1972
230 Ireland 12916 A 1972 1972
231 Ireland 12917 G 1972 1972
232 Ireland 12918 A 1972 1972
233 Ireland 12919 C 1972 1972
234 Ireland 12920 A 1972 1972
235 Ireland 12921 C 1972 1972
236 Ireland 12922 A 1972 1972
237 Ireland 12923 C 1972 1972
238 Ireland 12924 C T 1972 1968 Pro4220Leu
239 Ireland 12925 T 1972 1972
240 Ireland 12926 A 1972 1972
241 Ireland 12927 A 1972 1972
242 Ireland 12928 A 1972 1972
243 Ireland 12929 G 1972 1972
244 Ireland 12930 G 1972 1972
245 Ireland 12931 T 1972 1972
246 Ireland 12932 C 1972 1972
247 Ireland 12933 C T 1972 1970 Pro4223Leu
248 Ireland 12934 T 1972 1972
249 Ireland 12935 A 1972 1972
250 Ireland 12936 A 1972 1972
251 Ireland 12937 A 1972 1972
252 Ireland 12938 G 1972 1972
253 Ireland 12939 T 1972 1972
254 Ireland 12940 G 1972 1972
255 Ireland 12941 A 1972 1972
256 Ireland 12942 A 1972 1972
257 Ireland 12943 G 1972 1972
258 Ireland 12944 T 1972 1972
259 Ireland 12945 A 1972 1972
260 Ireland 12946 T 1972 1972
261 Ireland 12947 T 1972 1972
262 Ireland 12948 T 1972 1972
263 Ireland 12949 A 1972 1972
264 Ireland 12950 T 1972 1972
265 Ireland 12951 A 1972 1972
266 Ireland 12952 C 1972 1972
267 Ireland 12953 T 1972 1972
268 Ireland 12954 T 1972 1972
269 Ireland 12955 T 1972 1972
270 Ireland 12956 A 1972 1972
271 Ireland 12957 T 1972 1972
272 Ireland 12958 T 1972 1972
273 Ireland 12959 A 1972 1972
274 Ireland 12960 A 1972 1972
275 Ireland 12961 A 1972 1972
276 Ireland 12962 G 1972 1972
277 Ireland 12963 G 1972 1972
278 Ireland 12964 A G 1972 1968 Gly4233Gly
279 Ireland 12965 T 1972 1972
280 Ireland 12966 T 1972 1972
281 Ireland 12967 A 1972 1972
282 Ireland 12968 A 1972 1972
283 Ireland 12969 A 1972 1972
284 Ireland 12970 C T 1972 1971 Asn4235Asn
285 Ireland 12971 A 1972 1972
286 Ireland 12972 A 1972 1972
287 Ireland 12973 C 1972 1972
288 Ireland 12974 C 1972 1972
289 Ireland 12975 T 1972 1972
290 Ireland 12976 A 1972 1972
291 Ireland 12977 A 1972 1972
292 Ireland 12978 A 1972 1972
293 Ireland 12979 T 1972 1972
294 Ireland 12980 A 1972 1972
295 Ireland 12981 G 1972 1972
296 Ireland 12982 A 1972 1972
297 Ireland 12983 G 1972 1972
298 Ireland 12984 G 1972 1972
299 Ireland 12985 T C 1972 1970 Gly4240Gly
300 Ireland 12986 A 1972 1972
301 Ireland 12987 T 1972 1972
302 Ireland 12988 G T 1972 1967 Met4241Ile
303 Ireland 12989 G 1972 1972
304 Ireland 12990 T 1972 1972
305 Ireland 12991 A 1972 1972
306 Ireland 12992 C 1972 1972
307 Ireland 12993 T 1972 1972
308 Ireland 12994 T 1972 1972
309 Ireland 12995 G 1972 1972
310 Ireland 12996 G 1972 1972
311 Ireland 12997 T 1972 1972
312 Ireland 12998 A 1972 1972
313 Ireland 12999 G 1972 1972
314 Ireland 13000 T 1972 1972
315 Ireland 13001 T 1972 1972
316 Ireland 13002 T 1972 1972
317 Ireland 13003 A 1972 1972
318 Ireland 13004 G 1972 1972
319 Ireland 13005 C 1972 1972
320 Ireland 13006 T 1972 1972
321 Ireland 13007 G 1972 1972
322 Ireland 13008 C 1972 1972
323 Ireland 13009 C 1972 1972
324 Ireland 13010 A 1972 1972
325 Ireland 13011 C 1972 1972
326 Ireland 13012 A 1972 1972
327 Ireland 13013 G 1972 1972
328 Ireland 13014 T 1972 1972
329 Ireland 13015 A 1972 1972
330 Ireland 13016 C 1972 1972
331 Ireland 13017 G 1972 1972
332 Ireland 13018 T C 1972 1971 Arg4251Arg
333 Ireland 13019 C 1972 1972
334 Ireland 13020 T 1972 1972
335 Ireland 13021 A 1972 1972
336 Ireland 13022 C 1972 1972
337 Ireland 13023 A 1972 1972
338 Ireland 13024 A 1972 1972