National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                     1                
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Iraq 12686 A 31 31
1 Iraq 12687 A 31 31
2 Iraq 12688 T 31 31
3 Iraq 12689 A 31 31
4 Iraq 12690 A 31 31
5 Iraq 12691 T 31 31
6 Iraq 12692 G 31 31
7 Iraq 12693 A 31 31
8 Iraq 12694 G 31 31
9 Iraq 12695 C 31 31
10 Iraq 12696 T 31 31
11 Iraq 12697 T 31 31
12 Iraq 12698 A 31 31
13 Iraq 12699 G 31 31
14 Iraq 12700 T 31 31
15 Iraq 12701 C 31 31
16 Iraq 12702 C 31 31
17 Iraq 12703 T 31 31
18 Iraq 12704 G 31 31
19 Iraq 12705 T 31 31
20 Iraq 12706 T 31 31
21 Iraq 12707 G 31 31
22 Iraq 12708 C 31 31
23 Iraq 12709 A 31 31
24 Iraq 12710 C 31 31
25 Iraq 12711 T 31 31
26 Iraq 12712 A 31 31
27 Iraq 12713 C 31 31
28 Iraq 12714 G 31 31
29 Iraq 12715 A 31 31
30 Iraq 12716 C 31 31
31 Iraq 12717 A 31 31
32 Iraq 12718 G 31 31
33 Iraq 12719 A 31 31
34 Iraq 12720 T 31 31
35 Iraq 12721 G 31 31
36 Iraq 12722 T 31 31
37 Iraq 12723 C 31 31
38 Iraq 12724 T 31 31
39 Iraq 12725 T 31 31
40 Iraq 12726 G 31 31
41 Iraq 12727 T 31 31
42 Iraq 12728 G 31 31
43 Iraq 12729 C 31 31
44 Iraq 12730 T 31 31
45 Iraq 12731 G 31 31
46 Iraq 12732 C 31 31
47 Iraq 12733 C 31 31
48 Iraq 12734 G 31 31
49 Iraq 12735 G 31 31
50 Iraq 12736 T 31 31
51 Iraq 12737 A 31 31
52 Iraq 12738 C 31 31
53 Iraq 12739 T 31 31
54 Iraq 12740 A 31 31
55 Iraq 12741 C 31 31
56 Iraq 12742 A 31 31
57 Iraq 12743 C 31 31
58 Iraq 12744 A 31 31
59 Iraq 12745 A 31 31
60 Iraq 12746 A 31 31
61 Iraq 12747 C 31 31
62 Iraq 12748 T 31 31
63 Iraq 12749 G 31 31
64 Iraq 12750 C 31 31
65 Iraq 12751 T 31 31
66 Iraq 12752 T 31 31
67 Iraq 12753 G 31 31
68 Iraq 12754 C 31 31
69 Iraq 12755 A 31 31
70 Iraq 12756 C 31 31
71 Iraq 12757 T 31 31
72 Iraq 12758 G 31 31
73 Iraq 12759 A 31 31
74 Iraq 12760 T 31 31
75 Iraq 12761 G 31 31
76 Iraq 12762 A 31 31
77 Iraq 12763 C 31 31
78 Iraq 12764 A 31 31
79 Iraq 12765 A 31 31
80 Iraq 12766 T 31 31
81 Iraq 12767 G 31 31
82 Iraq 12768 C 31 31
83 Iraq 12769 G 31 31
84 Iraq 12770 T 31 31
85 Iraq 12771 T 31 31
86 Iraq 12772 A 31 31
87 Iraq 12773 G 31 31
88 Iraq 12774 C 31 31
89 Iraq 12775 T 31 31
90 Iraq 12776 T 31 31
91 Iraq 12777 A 31 31
92 Iraq 12778 C 31 31
93 Iraq 12779 T 31 31
94 Iraq 12780 A 31 31
95 Iraq 12781 C 31 31
96 Iraq 12782 A 31 31
97 Iraq 12783 A 31 31
98 Iraq 12784 C T 31 30 Asn4173Asn
99 Iraq 12785 A 31 31
100 Iraq 12786 C 31 31
101 Iraq 12787 A 31 31
102 Iraq 12788 A 31 31
103 Iraq 12789 C 31 31
104 Iraq 12790 A 31 31
105 Iraq 12791 A 31 31
106 Iraq 12792 A 31 31
107 Iraq 12793 G 31 31
108 Iraq 12794 G 31 31
109 Iraq 12795 G 31 31
110 Iraq 12796 A 31 31
111 Iraq 12797 G 31 31
112 Iraq 12798 G 31 31
113 Iraq 12799 T 31 31
114 Iraq 12800 A 31 31
115 Iraq 12801 G 31 31
116 Iraq 12802 G 31 31
117 Iraq 12803 T 31 31
118 Iraq 12804 T 31 31
119 Iraq 12805 T 31 31
120 Iraq 12806 G 31 31
121 Iraq 12807 T 31 31
122 Iraq 12808 A 31 31
123 Iraq 12809 C 31 31
124 Iraq 12810 T 31 31
125 Iraq 12811 T 31 31
126 Iraq 12812 G 31 31
127 Iraq 12813 C 31 31
128 Iraq 12814 A 31 31
129 Iraq 12815 C 31 31
130 Iraq 12816 T 31 31
131 Iraq 12817 G 31 31
132 Iraq 12818 T 31 31
133 Iraq 12819 T 31 31
134 Iraq 12820 A 31 31
135 Iraq 12821 T 31 31
136 Iraq 12822 C 31 31
137 Iraq 12823 C 31 31
138 Iraq 12824 G 31 31
139 Iraq 12825 A 31 31
140 Iraq 12826 T 31 31
141 Iraq 12827 T 31 31
142 Iraq 12828 T 31 31
143 Iraq 12829 A 31 31
144 Iraq 12830 C 31 31
145 Iraq 12831 A 31 31
146 Iraq 12832 G 31 31
147 Iraq 12833 G 31 31
148 Iraq 12834 A 31 31
149 Iraq 12835 T 31 31
150 Iraq 12836 T 31 31
151 Iraq 12837 T 31 31
152 Iraq 12838 G 31 31
153 Iraq 12839 A 31 31
154 Iraq 12840 A 31 31
155 Iraq 12841 A 31 31
156 Iraq 12842 T 31 31
157 Iraq 12843 G 31 31
158 Iraq 12844 G 31 31
159 Iraq 12845 G 31 31
160 Iraq 12846 C 31 31
161 Iraq 12847 T 31 31
162 Iraq 12848 A 31 31
163 Iraq 12849 G 31 31
164 Iraq 12850 A 31 31
165 Iraq 12851 T 31 31
166 Iraq 12852 T 31 31
167 Iraq 12853 C 31 31
168 Iraq 12854 C 31 31
169 Iraq 12855 C 31 31
170 Iraq 12856 T 31 31
171 Iraq 12857 A 31 31
172 Iraq 12858 A 31 31
173 Iraq 12859 G 31 31
174 Iraq 12860 A 31 31
175 Iraq 12861 G 31 31
176 Iraq 12862 T 31 31
177 Iraq 12863 G 31 31
178 Iraq 12864 A 31 31
179 Iraq 12865 T 31 31
180 Iraq 12866 G 31 31
181 Iraq 12867 G 31 31
182 Iraq 12868 A 31 31
183 Iraq 12869 A 31 31
184 Iraq 12870 C 31 31
185 Iraq 12871 T 31 31
186 Iraq 12872 G 31 31
187 Iraq 12873 G 31 31
188 Iraq 12874 T 31 31
189 Iraq 12875 A 31 31
190 Iraq 12876 C 31 31
191 Iraq 12877 T 31 31
192 Iraq 12878 A 31 31
193 Iraq 12879 T 31 31
194 Iraq 12880 C 31 31
195 Iraq 12881 T 31 31
196 Iraq 12882 A 31 31
197 Iraq 12883 T 31 31
198 Iraq 12884 A 31 31
199 Iraq 12885 C 31 31
200 Iraq 12886 A 31 31
201 Iraq 12887 G 31 31
202 Iraq 12888 A 31 31
203 Iraq 12889 A 31 31
204 Iraq 12890 C 31 31
205 Iraq 12891 T 31 31
206 Iraq 12892 G 31 31
207 Iraq 12893 G 31 31
208 Iraq 12894 A 31 31
209 Iraq 12895 A 31 31
210 Iraq 12896 C 31 31
211 Iraq 12897 C 31 31
212 Iraq 12898 A 31 31
213 Iraq 12899 C 31 31
214 Iraq 12900 C 31 31
215 Iraq 12901 T 31 31
216 Iraq 12902 T 31 31
217 Iraq 12903 G 31 31
218 Iraq 12904 T 31 31
219 Iraq 12905 A 31 31
220 Iraq 12906 G 31 31
221 Iraq 12907 G 31 31
222 Iraq 12908 T 31 31
223 Iraq 12909 T 31 31
224 Iraq 12910 T 31 31
225 Iraq 12911 G 31 31
226 Iraq 12912 T 31 31
227 Iraq 12913 T 31 31
228 Iraq 12914 A 31 31
229 Iraq 12915 C 31 31
230 Iraq 12916 A 31 31
231 Iraq 12917 G 31 31
232 Iraq 12918 A 31 31
233 Iraq 12919 C 31 31
234 Iraq 12920 A 31 31
235 Iraq 12921 C 31 31
236 Iraq 12922 A 31 31
237 Iraq 12923 C 31 31
238 Iraq 12924 C 31 31
239 Iraq 12925 T 31 31
240 Iraq 12926 A 31 31
241 Iraq 12927 A 31 31
242 Iraq 12928 A 31 31
243 Iraq 12929 G 31 31
244 Iraq 12930 G 31 31
245 Iraq 12931 T 31 31
246 Iraq 12932 C 31 31
247 Iraq 12933 C 31 31
248 Iraq 12934 T 31 31
249 Iraq 12935 A 31 31
250 Iraq 12936 A 31 31
251 Iraq 12937 A 31 31
252 Iraq 12938 G 31 31
253 Iraq 12939 T 31 31
254 Iraq 12940 G 31 31
255 Iraq 12941 A 31 31
256 Iraq 12942 A 31 31
257 Iraq 12943 G 31 31
258 Iraq 12944 T 31 31
259 Iraq 12945 A 31 31
260 Iraq 12946 T 31 31
261 Iraq 12947 T 31 31
262 Iraq 12948 T 31 31
263 Iraq 12949 A 31 31
264 Iraq 12950 T 31 31
265 Iraq 12951 A 31 31
266 Iraq 12952 C 31 31
267 Iraq 12953 T 31 31
268 Iraq 12954 T 31 31
269 Iraq 12955 T 31 31
270 Iraq 12956 A 31 31
271 Iraq 12957 T 31 31
272 Iraq 12958 T 31 31
273 Iraq 12959 A 31 31
274 Iraq 12960 A 31 31
275 Iraq 12961 A 31 31
276 Iraq 12962 G 31 31
277 Iraq 12963 G 31 31
278 Iraq 12964 A 31 31
279 Iraq 12965 T 31 31
280 Iraq 12966 T 31 31
281 Iraq 12967 A 31 31
282 Iraq 12968 A 31 31
283 Iraq 12969 A 31 31
284 Iraq 12970 C 31 31
285 Iraq 12971 A 31 31
286 Iraq 12972 A 31 31
287 Iraq 12973 C 31 31
288 Iraq 12974 C 31 31
289 Iraq 12975 T 31 31
290 Iraq 12976 A 31 31
291 Iraq 12977 A 31 31
292 Iraq 12978 A 31 31
293 Iraq 12979 T 31 31
294 Iraq 12980 A 31 31
295 Iraq 12981 G 31 31
296 Iraq 12982 A 31 31
297 Iraq 12983 G 31 31
298 Iraq 12984 G 31 31
299 Iraq 12985 T 31 31
300 Iraq 12986 A 31 31
301 Iraq 12987 T 31 31
302 Iraq 12988 G 31 31
303 Iraq 12989 G 31 31
304 Iraq 12990 T 31 31
305 Iraq 12991 A 31 31
306 Iraq 12992 C 31 31
307 Iraq 12993 T 31 31
308 Iraq 12994 T 31 31
309 Iraq 12995 G 31 31
310 Iraq 12996 G 31 31
311 Iraq 12997 T 31 31
312 Iraq 12998 A 31 31
313 Iraq 12999 G 31 31
314 Iraq 13000 T 31 31
315 Iraq 13001 T 31 31
316 Iraq 13002 T 31 31
317 Iraq 13003 A 31 31
318 Iraq 13004 G 31 31
319 Iraq 13005 C 31 31
320 Iraq 13006 T 31 31
321 Iraq 13007 G 31 31
322 Iraq 13008 C 31 31
323 Iraq 13009 C 31 31
324 Iraq 13010 A 31 31
325 Iraq 13011 C 31 31
326 Iraq 13012 A 31 31
327 Iraq 13013 G 31 31
328 Iraq 13014 T 31 31
329 Iraq 13015 A 31 31
330 Iraq 13016 C 31 31
331 Iraq 13017 G 31 31
332 Iraq 13018 T 31 31
333 Iraq 13019 C 31 31
334 Iraq 13020 T 31 31
335 Iraq 13021 A 31 31
336 Iraq 13022 C 31 31
337 Iraq 13023 A 31 31
338 Iraq 13024 A 31 31