National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30                                        
C   9                                        
D   18                                        
E   9                                        
F   12                                        
G   27                                        
H                                            
I   6                                        
K   21                                        
L   45                                        
M   6                                        
N   21                                        
P   18             1                          
Q   12                 1                      
R   18                                        
S   15                                        
T   36                                        
V   18                                        
W   3                                        
Y   15                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Iran 12686 A 36 36
1 Iran 12687 A 36 36
2 Iran 12688 T 36 36
3 Iran 12689 A 36 36
4 Iran 12690 A 36 36
5 Iran 12691 T 36 36
6 Iran 12692 G 36 36
7 Iran 12693 A 36 36
8 Iran 12694 G 36 36
9 Iran 12695 C 36 36
10 Iran 12696 T 36 36
11 Iran 12697 T 36 36
12 Iran 12698 A 36 36
13 Iran 12699 G 36 36
14 Iran 12700 T 36 36
15 Iran 12701 C 36 36
16 Iran 12702 C 36 36
17 Iran 12703 T 36 36
18 Iran 12704 G 36 36
19 Iran 12705 T 36 36
20 Iran 12706 T 36 36
21 Iran 12707 G 36 36
22 Iran 12708 C 36 36
23 Iran 12709 A 36 36
24 Iran 12710 C 36 36
25 Iran 12711 T 36 36
26 Iran 12712 A 36 36
27 Iran 12713 C 36 36
28 Iran 12714 G 36 36
29 Iran 12715 A 36 36
30 Iran 12716 C 36 36
31 Iran 12717 A 36 36
32 Iran 12718 G 36 36
33 Iran 12719 A 36 36
34 Iran 12720 T 36 36
35 Iran 12721 G 36 36
36 Iran 12722 T 36 36
37 Iran 12723 C 36 36
38 Iran 12724 T 36 36
39 Iran 12725 T 36 36
40 Iran 12726 G 36 36
41 Iran 12727 T 36 36
42 Iran 12728 G 36 36
43 Iran 12729 C 36 36
44 Iran 12730 T 36 36
45 Iran 12731 G 36 36
46 Iran 12732 C 36 36
47 Iran 12733 C 36 36
48 Iran 12734 G 36 36
49 Iran 12735 G 36 36
50 Iran 12736 T 36 36
51 Iran 12737 A 36 36
52 Iran 12738 C 36 36
53 Iran 12739 T 36 36
54 Iran 12740 A 36 36
55 Iran 12741 C 36 36
56 Iran 12742 A 36 36
57 Iran 12743 C 36 36
58 Iran 12744 A 36 36
59 Iran 12745 A 36 36
60 Iran 12746 A 36 36
61 Iran 12747 C 36 36
62 Iran 12748 T 36 36
63 Iran 12749 G 36 36
64 Iran 12750 C 36 35
65 Iran 12751 T 36 36
66 Iran 12752 T 36 36
67 Iran 12753 G 36 36
68 Iran 12754 C 36 35
69 Iran 12755 A 36 36
70 Iran 12756 C 36 36
71 Iran 12757 T 36 36
72 Iran 12758 G 36 36
73 Iran 12759 A 36 36
74 Iran 12760 T 36 36
75 Iran 12761 G 36 36
76 Iran 12762 A 36 36
77 Iran 12763 C 36 36
78 Iran 12764 A 36 35
79 Iran 12765 A 36 36
80 Iran 12766 T 36 36
81 Iran 12767 G 36 36
82 Iran 12768 C 36 35
83 Iran 12769 G 36 36
84 Iran 12770 T 36 36
85 Iran 12771 T 36 36
86 Iran 12772 A 36 36
87 Iran 12773 G 36 36
88 Iran 12774 C 36 36
89 Iran 12775 T 36 36
90 Iran 12776 T 36 36
91 Iran 12777 A 36 36
92 Iran 12778 C 36 36
93 Iran 12779 T 36 36
94 Iran 12780 A 36 36
95 Iran 12781 C 36 36
96 Iran 12782 A 36 36
97 Iran 12783 A 36 36
98 Iran 12784 C 36 36
99 Iran 12785 A 36 36
100 Iran 12786 C 36 36
101 Iran 12787 A 36 36
102 Iran 12788 A 36 36
103 Iran 12789 C 36 36
104 Iran 12790 A 36 36
105 Iran 12791 A 36 36
106 Iran 12792 A 36 36
107 Iran 12793 G 36 36
108 Iran 12794 G 36 36
109 Iran 12795 G 36 36
110 Iran 12796 A 36 36
111 Iran 12797 G 36 36
112 Iran 12798 G 36 36
113 Iran 12799 T 36 36
114 Iran 12800 A 36 36
115 Iran 12801 G 36 36
116 Iran 12802 G 36 36
117 Iran 12803 T 36 36
118 Iran 12804 T 36 36
119 Iran 12805 T 36 36
120 Iran 12806 G 36 36
121 Iran 12807 T 36 36
122 Iran 12808 A 36 36
123 Iran 12809 C 36 36
124 Iran 12810 T 36 36
125 Iran 12811 T 36 36
126 Iran 12812 G 36 36
127 Iran 12813 C 36 36
128 Iran 12814 A 36 36
129 Iran 12815 C 36 36
130 Iran 12816 T 36 36
131 Iran 12817 G 36 36
132 Iran 12818 T 36 36
133 Iran 12819 T 36 36
134 Iran 12820 A 36 36
135 Iran 12821 T 36 36
136 Iran 12822 C 36 36
137 Iran 12823 C 36 36
138 Iran 12824 G 36 36
139 Iran 12825 A 36 36
140 Iran 12826 T 36 36
141 Iran 12827 T 36 36
142 Iran 12828 T 36 36
143 Iran 12829 A 36 36
144 Iran 12830 C A 36 35 Gln4189Lys
145 Iran 12831 A 36 36
146 Iran 12832 G 36 36
147 Iran 12833 G 36 36
148 Iran 12834 A 36 36
149 Iran 12835 T 36 36
150 Iran 12836 T 36 36
151 Iran 12837 T 36 36
152 Iran 12838 G 36 36
153 Iran 12839 A 36 36
154 Iran 12840 A 36 36
155 Iran 12841 A 36 36
156 Iran 12842 T 36 36
157 Iran 12843 G 36 36
158 Iran 12844 G 36 36
159 Iran 12845 G 36 36
160 Iran 12846 C 36 36
161 Iran 12847 T 36 36
162 Iran 12848 A 36 36
163 Iran 12849 G 36 36
164 Iran 12850 A 36 36
165 Iran 12851 T 36 36
166 Iran 12852 T 36 36
167 Iran 12853 C 36 36
168 Iran 12854 C 36 36
169 Iran 12855 C A 36 35 Pro4197His
170 Iran 12856 T 36 36
171 Iran 12857 A 36 36
172 Iran 12858 A 36 36
173 Iran 12859 G 36 36
174 Iran 12860 A 36 36
175 Iran 12861 G 36 36
176 Iran 12862 T 36 36
177 Iran 12863 G 36 36
178 Iran 12864 A 36 36
179 Iran 12865 T 36 36
180 Iran 12866 G 36 36
181 Iran 12867 G 36 36
182 Iran 12868 A 36 36
183 Iran 12869 A 36 36
184 Iran 12870 C 36 36
185 Iran 12871 T 36 36
186 Iran 12872 G 36 36
187 Iran 12873 G 36 36
188 Iran 12874 T 36 36
189 Iran 12875 A 36 36
190 Iran 12876 C 36 36
191 Iran 12877 T 36 36
192 Iran 12878 A 36 36
193 Iran 12879 T 36 36
194 Iran 12880 C 36 36
195 Iran 12881 T 36 36
196 Iran 12882 A 36 36
197 Iran 12883 T 36 36
198 Iran 12884 A 36 36
199 Iran 12885 C 36 36
200 Iran 12886 A 36 36
201 Iran 12887 G 36 36
202 Iran 12888 A 36 36
203 Iran 12889 A 36 36
204 Iran 12890 C 36 36
205 Iran 12891 T 36 36
206 Iran 12892 G 36 36
207 Iran 12893 G 36 36
208 Iran 12894 A 36 36
209 Iran 12895 A 36 36
210 Iran 12896 C 36 36
211 Iran 12897 C 36 36
212 Iran 12898 A 36 36
213 Iran 12899 C 36 36
214 Iran 12900 C 36 36
215 Iran 12901 T 36 36
216 Iran 12902 T 36 36
217 Iran 12903 G 36 36
218 Iran 12904 T 36 36
219 Iran 12905 A 36 36
220 Iran 12906 G 36 36
221 Iran 12907 G 36 36
222 Iran 12908 T 36 36
223 Iran 12909 T 36 36
224 Iran 12910 T 36 36
225 Iran 12911 G 36 36
226 Iran 12912 T 36 36
227 Iran 12913 T 36 36
228 Iran 12914 A 36 36
229 Iran 12915 C 36 36
230 Iran 12916 A 36 36
231 Iran 12917 G 36 36
232 Iran 12918 A 36 36
233 Iran 12919 C 36 36
234 Iran 12920 A 36 36
235 Iran 12921 C 36 36
236 Iran 12922 A 36 36
237 Iran 12923 C 36 36
238 Iran 12924 C 36 36
239 Iran 12925 T 36 36
240 Iran 12926 A 36 36
241 Iran 12927 A 36 36
242 Iran 12928 A 36 36
243 Iran 12929 G 36 36
244 Iran 12930 G 36 36
245 Iran 12931 T 36 36
246 Iran 12932 C 36 36
247 Iran 12933 C 36 36
248 Iran 12934 T 36 36
249 Iran 12935 A 36 36
250 Iran 12936 A 36 36
251 Iran 12937 A 36 36
252 Iran 12938 G 36 36
253 Iran 12939 T 36 36
254 Iran 12940 G 36 36
255 Iran 12941 A 36 36
256 Iran 12942 A 36 36
257 Iran 12943 G 36 36
258 Iran 12944 T 36 36
259 Iran 12945 A 36 36
260 Iran 12946 T 36 36
261 Iran 12947 T 36 36
262 Iran 12948 T 36 36
263 Iran 12949 A 36 36
264 Iran 12950 T 36 36
265 Iran 12951 A 36 36
266 Iran 12952 C 36 36
267 Iran 12953 T 36 36
268 Iran 12954 T 36 36
269 Iran 12955 T 36 36
270 Iran 12956 A 36 36
271 Iran 12957 T 36 36
272 Iran 12958 T 36 36
273 Iran 12959 A 36 36
274 Iran 12960 A 36 36
275 Iran 12961 A 36 36
276 Iran 12962 G 36 36
277 Iran 12963 G 36 36
278 Iran 12964 A 36 36
279 Iran 12965 T 36 36
280 Iran 12966 T 36 36
281 Iran 12967 A 36 36
282 Iran 12968 A 36 36
283 Iran 12969 A 36 36
284 Iran 12970 C 36 36
285 Iran 12971 A 36 36
286 Iran 12972 A 36 36
287 Iran 12973 C 36 36
288 Iran 12974 C 36 36
289 Iran 12975 T 36 36
290 Iran 12976 A 36 36
291 Iran 12977 A 36 36
292 Iran 12978 A 36 36
293 Iran 12979 T 36 36
294 Iran 12980 A 36 36
295 Iran 12981 G 36 36
296 Iran 12982 A 36 36
297 Iran 12983 G 36 36
298 Iran 12984 G 36 36
299 Iran 12985 T 36 36
300 Iran 12986 A 36 36
301 Iran 12987 T 36 36
302 Iran 12988 G 36 36
303 Iran 12989 G 36 36
304 Iran 12990 T 36 36
305 Iran 12991 A 36 36
306 Iran 12992 C 36 36
307 Iran 12993 T 36 36
308 Iran 12994 T 36 36
309 Iran 12995 G 36 36
310 Iran 12996 G 36 36
311 Iran 12997 T 36 36
312 Iran 12998 A 36 36
313 Iran 12999 G 36 36
314 Iran 13000 T 36 36
315 Iran 13001 T 36 36
316 Iran 13002 T 36 36
317 Iran 13003 A 36 36
318 Iran 13004 G 36 36
319 Iran 13005 C 36 36
320 Iran 13006 T 36 36
321 Iran 13007 G 36 36
322 Iran 13008 C 36 36
323 Iran 13009 C 36 36
324 Iran 13010 A 36 36
325 Iran 13011 C 36 36
326 Iran 13012 A 36 36
327 Iran 13013 G 36 36
328 Iran 13014 T 36 36
329 Iran 13015 A 36 36
330 Iran 13016 C 36 36
331 Iran 13017 G 36 36
332 Iran 13018 T 36 36
333 Iran 13019 C 36 36
334 Iran 13020 T 36 36
335 Iran 13021 A 36 36
336 Iran 13022 C 36 36
337 Iran 13023 A 36 36
338 Iran 13024 A 36 36