National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P Q R S T V W Y
*                                            
-     338                                      
?                                            
A     30 5                             1      
C     9                                      
D     18     3 1                              
E     9                                      
F     12                             1        
G     27     1     1               1 2        
I     6             1                        
K     20               1   1 2     1   1      
L 1   45         1       7           1   1    
M     6                               1 1    
N     21                     2       1        
P     18                 1                    
Q     12                                      
R     18                                      
S     15                             1        
T     36 1           4       1       1 2      
V     18 1           2                   2    
W     3                                      
Y     15                                     2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 India 12686 A 4748 4748
1 India 12687 A 4748 4748
2 India 12688 T 4748 4748
3 India 12689 A 4748 4747
4 India 12690 A 4748 4748
5 India 12691 T 4748 4748
6 India 12692 G 4748 4747
7 India 12693 A 4748 4748
8 India 12694 G 4750 4750
9 India 12695 C 4750 4747
10 India 12696 T 4750 4750
11 India 12697 T 4750 4750
12 India 12698 A 4750 4748
13 India 12699 G 4750 4749
14 India 12700 T 4750 4750
15 India 12701 C 4750 4749
16 India 12702 C 4752 4751
17 India 12703 T 4752 4749
18 India 12704 G 4752 4751
19 India 12705 T C 4752 4747 Val4147Ala
20 India 12706 T A 4752 4746 Val4147Val
21 India 12707 G 4752 4750
22 India 12708 C 4752 4751
23 India 12709 A 4752 4751
24 India 12710 C T 4753 4750 Leu4149Leu
25 India 12711 T 4754 4754
26 India 12712 A 4754 4754
27 India 12713 C 4756 4756
28 India 12714 G 4756 4754
29 India 12715 A 4757 4755
30 India 12716 C 4757 4756
31 India 12717 A 4757 4756
32 India 12718 G 4757 4755
33 India 12719 A 4757 4753
34 India 12720 T C 4757 4753 Met4152Thr
35 India 12721 G 4760 4757
36 India 12722 T 4760 4757
37 India 12723 C 4760 4757
38 India 12724 T 4760 4757
39 India 12725 T 4760 4757
40 India 12726 G 4760 4757
41 India 12727 T 4760 4757
42 India 12728 G 4760 4757
43 India 12729 C 4760 4756
44 India 12730 T A 4760 4756 Ala4155Ala
45 India 12731 G 4760 4757
46 India 12732 C 4760 4758
47 India 12733 C T,A 4760 4753 Ala4156Ala-p.Ala4156Ala
48 India 12734 G A 4760 4755 Gly4157Ser
49 India 12735 G 4760 4758
50 India 12736 T 4760 4758
51 India 12737 A 4760 4758
52 India 12738 C T 4760 4756 Thr4158Ile
53 India 12739 T 4760 4758
54 India 12740 A 4760 4758
55 India 12741 C 4760 4758
56 India 12742 A 4760 4758
57 India 12743 C 4760 4759
58 India 12744 A 4760 4759
59 India 12745 A 4760 4759
60 India 12746 A 4760 4758
61 India 12747 C 4760 4758
62 India 12748 T 4760 4758
63 India 12749 G A 4760 4758 Ala4162Thr
64 India 12750 C 4760 4759
65 India 12751 T 4761 4760
66 India 12752 T 4761 4760
67 India 12753 G 4761 4760
68 India 12754 C 4761 4759
69 India 12755 A 4761 4760
70 India 12756 C T 4761 4754 Thr4164Ile
71 India 12757 T C 4760 4751 Thr4164Thr
72 India 12758 G 4760 4758
73 India 12759 A 4761 4758
74 India 12760 T A 4761 4758 Asp4165Glu
75 India 12761 G 4763 4761
76 India 12762 A 4763 4760
77 India 12763 C 4763 4761
78 India 12764 A 4763 4760
79 India 12765 A G 4763 4759 Asn4167Ser
80 India 12766 T 4763 4761
81 India 12767 G 4765 4762
82 India 12768 C 4765 4763
83 India 12769 G 4765 4763
84 India 12770 T 4765 4763
85 India 12771 T 4765 4763
86 India 12772 A 4765 4763
87 India 12773 G 4765 4761
88 India 12774 C 4765 4763
89 India 12775 T 4765 4764
90 India 12776 T 4765 4764
91 India 12777 A 4765 4764
92 India 12778 C 4765 4745
93 India 12779 T 4764 4763
94 India 12780 A 4764 4763
95 India 12781 C T 4764 4760 Tyr4172Tyr
96 India 12782 A 4764 4763
97 India 12783 A 4764 4763
98 India 12784 C T 4764 4758 Asn4173Asn
99 India 12785 A 4764 4762
100 India 12786 C 4764 4763
101 India 12787 A 4764 4763
102 India 12788 A 4764 4763
103 India 12789 C 4764 4763
104 India 12790 A 4764 4763
105 India 12791 A 4764 4763
106 India 12792 A T 4763 4759 Lys4176Met
107 India 12793 G T,C,A 4763 4755 Lys4176Asn-p.Lys4176Lys
108 India 12794 G A 4763 4757 Gly4177Arg
109 India 12795 G 4763 4757
110 India 12796 A 4762 4755
111 India 12797 G 4761 4754
112 India 12798 G A 4761 4752 Gly4178Asp
113 India 12799 T G 4761 4751 Gly4178Gly
114 India 12800 A 4760 4751
115 India 12801 G 4760 4749
116 India 12802 G 4760 4752
117 India 12803 T 4758 4750
118 India 12804 T 4756 4748
119 India 12805 T 4756 4746
120 India 12806 G A 4757 4746 Val4181Ile
121 India 12807 T 4757 4748
122 India 12808 A 4757 4748
123 India 12809 C T 4757 4745 Leu4182Phe
124 India 12810 T 4757 4749
125 India 12811 T A 4757 4748 Leu4182Leu
126 India 12812 G 4757 4749
127 India 12813 C 4757 4748
128 India 12814 A 4757 4748
129 India 12815 C 4757 4746
130 India 12816 T 4757 4747
131 India 12817 G 4757 4747
132 India 12818 T G 4757 4749 Leu4185Val
133 India 12819 T G 4757 4749 Leu4185*
134 India 12820 A G 4757 4747 Leu4185Leu
135 India 12821 T 4757 4751
136 India 12822 C 4757 4751
137 India 12823 C T 4757 4746 Ser4186Ser
138 India 12824 G 4757 4749
139 India 12825 A 4757 4750
140 India 12826 T 4757 4750
141 India 12827 T 4757 4750
142 India 12828 T C 4756 4753 Leu4188Ser
143 India 12829 A 4756 4755
144 India 12830 C 4756 4755
145 India 12831 A 4756 4755
146 India 12832 G 4756 4755
147 India 12833 G 4756 4755
148 India 12834 A 4756 4755
149 India 12835 T C 4756 4753 Asp4190Asp
150 India 12836 T C 4756 4754 Leu4191Leu
151 India 12837 T 4756 4755
152 India 12838 G 4756 4754
153 India 12839 A 4756 4755
154 India 12840 A 4756 4755
155 India 12841 A 4756 4755
156 India 12842 T 4756 4754
157 India 12843 G 4756 4755
158 India 12844 G 4756 4755
159 India 12845 G 4756 4755
160 India 12846 C 4756 4755
161 India 12847 T 4756 4755
162 India 12848 A 4756 4754
163 India 12849 G 4756 4755
164 India 12850 A 4756 4754
165 India 12851 T 4756 4755
166 India 12852 T C 4756 4754 Phe4196Ser
167 India 12853 C 4756 4755
168 India 12854 C 4756 4756
169 India 12855 C 4756 4756
170 India 12856 T 4756 4756
171 India 12857 A 4756 4756
172 India 12858 A G 4756 4755 Lys4198Arg
173 India 12859 G 4756 4755
174 India 12860 A 4756 4755
175 India 12861 G 4756 4756
176 India 12862 T 4756 4756
177 India 12863 G 4756 4755
178 India 12864 A 4756 4756
179 India 12865 T C 4756 4755 Asp4200Asp
180 India 12866 G 4756 4756
181 India 12867 G 4756 4755
182 India 12868 A 4755 4754
183 India 12869 A 4755 4753
184 India 12870 C 4755 4754
185 India 12871 T 4755 4754
186 India 12872 G 4755 4754
187 India 12873 G 4755 4754
188 India 12874 T 4755 4754
189 India 12875 A G 4755 4749 Thr4204Ala
190 India 12876 C A 4755 4753 Thr4204Asn
191 India 12877 T 4755 4754
192 India 12878 A 4755 4755
193 India 12879 T 4755 4754
194 India 12880 C T 4755 4730 Ile4205Ile
195 India 12881 T 4755 4755
196 India 12882 A 4755 4755
197 India 12883 T C 4755 4750 Tyr4206Tyr
198 India 12884 A T 4755 4754 Thr4207Ser
199 India 12885 C T 4755 4745 Thr4207Ile
200 India 12886 A T 4755 4753 Thr4207Thr
201 India 12887 G 4755 4753
202 India 12888 A 4755 4753
203 India 12889 A 4755 4753
204 India 12890 C T 4755 4752 Leu4209Leu
205 India 12891 T 4754 4752
206 India 12892 G T 4754 4750 Leu4209Leu
207 India 12893 G 4754 4753
208 India 12894 A 4754 4753
209 India 12895 A 4754 4753
210 India 12896 C 4754 4752
211 India 12897 C 4754 4751
212 India 12898 A 4754 4752
213 India 12899 C 4754 4751
214 India 12900 C 4754 4751
215 India 12901 T 4754 4751
216 India 12902 T 4754 4750
217 India 12903 G 4754 4750
218 India 12904 T 4754 4751
219 India 12905 A 4754 4752
220 India 12906 G 4754 4752
221 India 12907 G 4754 4753
222 India 12908 T 4754 4751
223 India 12909 T 4754 4752
224 India 12910 T 4754 4749
225 India 12911 G 4754 4751
226 India 12912 T 4754 4752
227 India 12913 T 4754 4751
228 India 12914 A 4754 4752
229 India 12915 C 4754 4751
230 India 12916 A 4754 4752
231 India 12917 G 4754 4752
232 India 12918 A 4754 4752
233 India 12919 C T 4754 4745 Asp4218Asp
234 India 12920 A 4753 4750
235 India 12921 C 4753 4750
236 India 12922 A 4752 4749
237 India 12923 C 4752 4751
238 India 12924 C T 4752 4747 Pro4220Leu
239 India 12925 T 4752 4752
240 India 12926 A 4752 4752
241 India 12927 A C 4752 4751 Lys4221Thr
242 India 12928 A 4752 4752
243 India 12929 G A 4752 4750 Gly4222Ser
244 India 12930 G 4752 4752
245 India 12931 T 4752 4752
246 India 12932 C 4752 4752
247 India 12933 C 4752 4751
248 India 12934 T 4752 4752
249 India 12935 A 4752 4752
250 India 12936 A 4752 4752
251 India 12937 A 4752 4752
252 India 12938 G 4752 4752
253 India 12939 T 4752 4752
254 India 12940 G T 4752 4750 Val4225Val
255 India 12941 A 4752 4751
256 India 12942 A 4752 4752
257 India 12943 G 4752 4752
258 India 12944 T 4752 4752
259 India 12945 A 4752 4752
260 India 12946 T 4751 4750
261 India 12947 T 4751 4750
262 India 12948 T 4751 4751
263 India 12949 A 4751 4751
264 India 12950 T 4751 4751
265 India 12951 A 4751 4751
266 India 12952 C 4751 4750
267 India 12953 T 4750 4749
268 India 12954 T 4750 4750
269 India 12955 T 4750 4749
270 India 12956 A 4750 4750
271 India 12957 T 4750 4750
272 India 12958 T 4750 4750
273 India 12959 A 4750 4750
274 India 12960 A 4750 4750
275 India 12961 A 4750 4749
276 India 12962 G 4749 4748
277 India 12963 G 4749 4749
278 India 12964 A 4749 4749
279 India 12965 T C 4749 4747 Leu4234Leu
280 India 12966 T 4749 4749
281 India 12967 A 4749 4749
282 India 12968 A 4749 4749
283 India 12969 A 4749 4749
284 India 12970 C T 4749 4746 Asn4235Asn
285 India 12971 A 4749 4749
286 India 12972 A 4749 4749
287 India 12973 C 4749 4749
288 India 12974 C 4749 4748
289 India 12975 T 4749 4749
290 India 12976 A 4749 4749
291 India 12977 A 4749 4749
292 India 12978 A 4749 4749
293 India 12979 T 4749 4749
294 India 12980 A 4748 4748
295 India 12981 G 4748 4747
296 India 12982 A 4747 4747
297 India 12983 G 4747 4747
298 India 12984 G 4747 4747
299 India 12985 T 4747 4747
300 India 12986 A G 4747 4746 Met4241Val
301 India 12987 T 4747 4747
302 India 12988 G 4747 4746
303 India 12989 G A 4747 4745 Val4242Ile
304 India 12990 T 4747 4746
305 India 12991 A 4747 4746
306 India 12992 C 4747 4746
307 India 12993 T 4747 4746
308 India 12994 T 4747 4746
309 India 12995 G 4747 4746
310 India 12996 G 4747 4746
311 India 12997 T 4747 4746
312 India 12998 A 4747 4746
313 India 12999 G 4747 4746
314 India 13000 T 4747 4746
315 India 13001 T 4747 4746
316 India 13002 T 4747 4743
317 India 13003 A 4747 4746
318 India 13004 G 4747 4745
319 India 13005 C 4747 4747
320 India 13006 T G 4747 4746 Ala4247Ala
321 India 13007 G 4747 4746
322 India 13008 C 4747 4747
323 India 13009 C T 4747 4743 Ala4248Ala
324 India 13010 A 4747 4747
325 India 13011 C T 4747 4744 Thr4249Ile
326 India 13012 A 4746 4746
327 India 13013 G 4746 4746
328 India 13014 T 4746 4746
329 India 13015 A 4746 4746
330 India 13016 C 4746 4745
331 India 13017 G 4746 4746
332 India 13018 T 4746 4746
333 India 13019 C 4746 4746
334 India 13020 T 4746 4746
335 India 13021 A 4746 4746
336 India 13022 C 4746 4746
337 India 13023 A 4746 4746
338 India 13024 A 4746 4746