National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G I K L M N P Q R S T V W Y
*                                            
-     339                                      
?                                            
A     30 1                                    
C     9                                      
D     18           1         1                
E     9                                      
F     12                                      
G     27                                      
I     6             1                        
K     21               1                      
L     45                 1                    
M     6             1                   2    
N     21                     2                
P     18                 2     1              
Q     12                                      
R 1   18                           1          
S     15                             1        
T     36             1       1         1      
V     18                                      
W     3                                      
Y     15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Iceland 12686 A 4143 4143
1 Iceland 12687 A 4143 4143
2 Iceland 12688 T 4143 4143
3 Iceland 12689 A 4143 4143
4 Iceland 12690 A 4143 4143
5 Iceland 12691 T 4143 4142
6 Iceland 12692 G 4143 4143
7 Iceland 12693 A 4143 4143
8 Iceland 12694 G 4143 4143
9 Iceland 12695 C 4143 4142
10 Iceland 12696 T 4143 4143
11 Iceland 12697 T 4143 4143
12 Iceland 12698 A 4143 4143
13 Iceland 12699 G 4143 4143
14 Iceland 12700 T 4143 4143
15 Iceland 12701 C 4143 4143
16 Iceland 12702 C 4143 4143
17 Iceland 12703 T 4143 4143
18 Iceland 12704 G 4143 4143
19 Iceland 12705 T 4143 4143
20 Iceland 12706 T 4143 4143
21 Iceland 12707 G 4143 4143
22 Iceland 12708 C 4143 4143
23 Iceland 12709 A 4143 4142
24 Iceland 12710 C 4143 4142
25 Iceland 12711 T 4153 4153
26 Iceland 12712 A 4153 4153
27 Iceland 12713 C T 4153 4152 Arg4150*
28 Iceland 12714 G 4153 4153
29 Iceland 12715 A 4153 4153
30 Iceland 12716 C 4153 4153
31 Iceland 12717 A 4153 4153
32 Iceland 12718 G 4153 4153
33 Iceland 12719 A G 4153 4152 Met4152Val
34 Iceland 12720 T 4153 4153
35 Iceland 12721 G 4153 4153
36 Iceland 12722 T 4153 4153
37 Iceland 12723 C 4153 4153
38 Iceland 12724 T 4153 4153
39 Iceland 12725 T 4153 4153
40 Iceland 12726 G 4153 4153
41 Iceland 12727 T 4153 4153
42 Iceland 12728 G 4153 4153
43 Iceland 12729 C 4153 4153
44 Iceland 12730 T 4153 4153
45 Iceland 12731 G 4153 4153
46 Iceland 12732 C 4153 4153
47 Iceland 12733 C 4161 4161
48 Iceland 12734 G 4161 4161
49 Iceland 12735 G 4161 4161
50 Iceland 12736 T 4161 4161
51 Iceland 12737 A 4161 4161
52 Iceland 12738 C 4161 4161
53 Iceland 12739 T 4161 4161
54 Iceland 12740 A 4161 4161
55 Iceland 12741 C 4161 4160
56 Iceland 12742 A 4161 4161
57 Iceland 12743 C 4161 4161
58 Iceland 12744 A 4161 4161
59 Iceland 12745 A 4161 4161
60 Iceland 12746 A 4161 4161
61 Iceland 12747 C A 4161 4160 Thr4161Asn
62 Iceland 12748 T 4161 4161
63 Iceland 12749 G 4161 4161
64 Iceland 12750 C 4161 4161
65 Iceland 12751 T 4161 4161
66 Iceland 12752 T 4161 4161
67 Iceland 12753 G 4161 4161
68 Iceland 12754 C 4161 4161
69 Iceland 12755 A 4161 4161
70 Iceland 12756 C 4161 4161
71 Iceland 12757 T 4161 4161
72 Iceland 12758 G 4161 4161
73 Iceland 12759 A G 4161 4157 Asp4165Gly
74 Iceland 12760 T 4161 4161
75 Iceland 12761 G 4161 4161
76 Iceland 12762 A 4161 4161
77 Iceland 12763 C 4161 4161
78 Iceland 12764 A 4161 4161
79 Iceland 12765 A 4161 4161
80 Iceland 12766 T 4161 4161
81 Iceland 12767 G 4161 4161
82 Iceland 12768 C 4161 4160
83 Iceland 12769 G 4161 4161
84 Iceland 12770 T 4161 4161
85 Iceland 12771 T 4161 4161
86 Iceland 12772 A 4161 4161
87 Iceland 12773 G 4161 4161
88 Iceland 12774 C 4161 4161
89 Iceland 12775 T 4161 4161
90 Iceland 12776 T 4161 4161
91 Iceland 12777 A 4161 4161
92 Iceland 12778 C 4161 4161
93 Iceland 12779 T 4161 4161
94 Iceland 12780 A 4150 4150
95 Iceland 12781 C 4150 4150
96 Iceland 12782 A 4150 4150
97 Iceland 12783 A 4150 4150
98 Iceland 12784 C 4150 4150
99 Iceland 12785 A 4150 4150
100 Iceland 12786 C 4150 4150
101 Iceland 12787 A G 4150 4148 Thr4174Thr
102 Iceland 12788 A 4150 4150
103 Iceland 12789 C T 4150 4149 Thr4175Ile
104 Iceland 12790 A 4150 4149
105 Iceland 12791 A 4150 4150
106 Iceland 12792 A 4150 4150
107 Iceland 12793 G A 4150 4147 Lys4176Lys
108 Iceland 12794 G 4150 4149
109 Iceland 12795 G 4150 4150
110 Iceland 12796 A 4150 4149
111 Iceland 12797 G 4150 4150
112 Iceland 12798 G 4150 4150
113 Iceland 12799 T 4150 4149
114 Iceland 12800 A 4150 4150
115 Iceland 12801 G 4150 4150
116 Iceland 12802 G 4150 4149
117 Iceland 12803 T 4126 4121
118 Iceland 12804 T 4126 4122
119 Iceland 12805 T 4126 4123
120 Iceland 12806 G 4126 4121
121 Iceland 12807 T 4126 4122
122 Iceland 12808 A 4126 4122
123 Iceland 12809 C 4126 4123
124 Iceland 12810 T 4126 4122
125 Iceland 12811 T 4126 4122
126 Iceland 12812 G 4126 4123
127 Iceland 12813 C 4126 4121
128 Iceland 12814 A 4126 4122
129 Iceland 12815 C 4126 4121
130 Iceland 12816 T 4126 4123
131 Iceland 12817 G 4126 4122
132 Iceland 12818 T 4125 4121
133 Iceland 12819 T 4125 4122
134 Iceland 12820 A 4125 4122
135 Iceland 12821 T 4125 4121
136 Iceland 12822 C 4125 4122
137 Iceland 12823 C T 4125 4121 Ser4186Ser
138 Iceland 12824 G A 4125 4063 Asp4187Asn
139 Iceland 12825 A 4125 4121
140 Iceland 12826 T 4125 4123
141 Iceland 12827 T 4125 4122
142 Iceland 12828 T 4125 4123
143 Iceland 12829 A 4125 4124
144 Iceland 12830 C 4125 4124
145 Iceland 12831 A 4125 4125
146 Iceland 12832 G 4125 4125
147 Iceland 12833 G 4125 4125
148 Iceland 12834 A 4125 4125
149 Iceland 12835 T 4125 4125
150 Iceland 12836 T 4125 4125
151 Iceland 12837 T 4125 4124
152 Iceland 12838 G 4125 4125
153 Iceland 12839 A 4125 4124
154 Iceland 12840 A 4125 4124
155 Iceland 12841 A 4125 4125
156 Iceland 12842 T 4125 4125
157 Iceland 12843 G 4125 4124
158 Iceland 12844 G 4125 4125
159 Iceland 12845 G 4125 4125
160 Iceland 12846 C 4125 4125
161 Iceland 12847 T 4125 4125
162 Iceland 12848 A 4125 4125
163 Iceland 12849 G 4125 4125
164 Iceland 12850 A 4125 4125
165 Iceland 12851 T 4124 4124
166 Iceland 12852 T 4124 4124
167 Iceland 12853 C 4124 4124
168 Iceland 12854 C 4124 4124
169 Iceland 12855 C 4124 4124
170 Iceland 12856 T 4124 4124
171 Iceland 12857 A 4124 4124
172 Iceland 12858 A 4124 4124
173 Iceland 12859 G 4124 4124
174 Iceland 12860 A 4124 4124
175 Iceland 12861 G 4124 4124
176 Iceland 12862 T 4121 4118
177 Iceland 12863 G 4121 4118
178 Iceland 12864 A 4121 4117
179 Iceland 12865 T 4121 4117
180 Iceland 12866 G 4121 4117
181 Iceland 12867 G 4122 4117
182 Iceland 12868 A 4121 4115
183 Iceland 12869 A 4121 4115
184 Iceland 12870 C 4121 4112
185 Iceland 12871 T 4121 4115
186 Iceland 12872 G 4121 4114
187 Iceland 12873 G 4121 4114
188 Iceland 12874 T 4122 4115
189 Iceland 12875 A 4122 4115
190 Iceland 12876 C 4122 4116
191 Iceland 12877 T 4122 4115
192 Iceland 12878 A 4122 4115
193 Iceland 12879 T 4122 4116
194 Iceland 12880 C T 4122 4113 Ile4205Ile
195 Iceland 12881 T 4122 4117
196 Iceland 12882 A 4122 4117
197 Iceland 12883 T 4122 4117
198 Iceland 12884 A 4122 4117
199 Iceland 12885 C 4122 4117
200 Iceland 12886 A 4122 4116
201 Iceland 12887 G 4122 4117
202 Iceland 12888 A 4122 4117
203 Iceland 12889 A 4122 4117
204 Iceland 12890 C 4122 4118
205 Iceland 12891 T 4122 4118
206 Iceland 12892 G 4122 4115
207 Iceland 12893 G 4122 4116
208 Iceland 12894 A 4122 4119
209 Iceland 12895 A 4122 4118
210 Iceland 12896 C 4122 4118
211 Iceland 12897 C 4122 4119
212 Iceland 12898 A G 4122 4117 Pro4211Pro
213 Iceland 12899 C 4122 4120
214 Iceland 12900 C 4122 4120
215 Iceland 12901 T 4122 4120
216 Iceland 12902 T 4122 4121
217 Iceland 12903 G 4122 4120
218 Iceland 12904 T 4122 4121
219 Iceland 12905 A 4122 4120
220 Iceland 12906 G 4122 4121
221 Iceland 12907 G 4122 4120
222 Iceland 12908 T 4122 4120
223 Iceland 12909 T 4122 4121
224 Iceland 12910 T 4122 4120
225 Iceland 12911 G 4122 4118
226 Iceland 12912 T 4122 4121
227 Iceland 12913 T 4122 4121
228 Iceland 12914 A 4122 4121
229 Iceland 12915 C 4122 4121
230 Iceland 12916 A 4122 4121
231 Iceland 12917 G 4122 4119
232 Iceland 12918 A 4122 4120
233 Iceland 12919 C 4122 4121
234 Iceland 12920 A 4122 4120
235 Iceland 12921 C 4122 4121
236 Iceland 12922 A 4122 4120
237 Iceland 12923 C 4122 4119
238 Iceland 12924 C T 4122 4119 Pro4220Leu
239 Iceland 12925 T 4122 4118
240 Iceland 12926 A 4122 4120
241 Iceland 12927 A 4122 4120
242 Iceland 12928 A 4122 4121
243 Iceland 12929 G 4122 4119
244 Iceland 12930 G 4122 4119
245 Iceland 12931 T 4122 4119
246 Iceland 12932 C 4122 4120
247 Iceland 12933 C T 4122 4118 Pro4223Leu
248 Iceland 12934 T 4122 4118
249 Iceland 12935 A 4122 4118
250 Iceland 12936 A 4122 4118
251 Iceland 12937 A 4122 4118
252 Iceland 12938 G 4122 4117
253 Iceland 12939 T 4122 4118
254 Iceland 12940 G 4122 4117
255 Iceland 12941 A 4122 4118
256 Iceland 12942 A 4122 4118
257 Iceland 12943 G 4122 4118
258 Iceland 12944 T 4123 4119
259 Iceland 12945 A 4123 4119
260 Iceland 12946 T 4125 4125
261 Iceland 12947 T 4125 4125
262 Iceland 12948 T 4125 4125
263 Iceland 12949 A 4125 4125
264 Iceland 12950 T 4125 4125
265 Iceland 12951 A 4125 4125
266 Iceland 12952 C T 4125 4123 Tyr4229Tyr
267 Iceland 12953 T 4125 4125
268 Iceland 12954 T 4125 4125
269 Iceland 12955 T 4125 4125
270 Iceland 12956 A 4125 4125
271 Iceland 12957 T 4125 4125
272 Iceland 12958 T 4125 4125
273 Iceland 12959 A 4125 4125
274 Iceland 12960 A 4125 4125
275 Iceland 12961 A 4125 4125
276 Iceland 12962 G 4125 4125
277 Iceland 12963 G 4125 4125
278 Iceland 12964 A 4125 4125
279 Iceland 12965 T 4125 4125
280 Iceland 12966 T 4125 4125
281 Iceland 12967 A 4125 4125
282 Iceland 12968 A 4125 4125
283 Iceland 12969 A 4125 4125
284 Iceland 12970 C T 4125 4124 Asn4235Asn
285 Iceland 12971 A 4125 4125
286 Iceland 12972 A 4125 4125
287 Iceland 12973 C T 4125 4122 Asn4236Asn
288 Iceland 12974 C 4124 4124
289 Iceland 12975 T 4124 4124
290 Iceland 12976 A 4124 4124
291 Iceland 12977 A 4124 4124
292 Iceland 12978 A 4124 4124
293 Iceland 12979 T 4124 4124
294 Iceland 12980 A 4124 4124
295 Iceland 12981 G 4124 4124
296 Iceland 12982 A 4124 4124
297 Iceland 12983 G 4124 4124
298 Iceland 12984 G 4124 4124
299 Iceland 12985 T 4124 4124
300 Iceland 12986 A G 4124 4123 Met4241Val
301 Iceland 12987 T 4124 4124
302 Iceland 12988 G T 4124 3961 Met4241Ile
303 Iceland 12989 G 4124 4124
304 Iceland 12990 T 4124 4124
305 Iceland 12991 A 4124 4124
306 Iceland 12992 C 4124 4124
307 Iceland 12993 T 4124 4124
308 Iceland 12994 T 4124 4124
309 Iceland 12995 G 4124 4124
310 Iceland 12996 G 4124 4123
311 Iceland 12997 T 4124 4123
312 Iceland 12998 A 4124 4123
313 Iceland 12999 G 4124 4123
314 Iceland 13000 T 4124 4123
315 Iceland 13001 T 4124 4123
316 Iceland 13002 T 4124 4122
317 Iceland 13003 A 4124 4122
318 Iceland 13004 G 4124 4123
319 Iceland 13005 C 4124 4123
320 Iceland 13006 T C 4124 4121 Ala4247Ala
321 Iceland 13007 G 4124 4124
322 Iceland 13008 C 4124 4124
323 Iceland 13009 C 4124 4124
324 Iceland 13010 A 4124 4124
325 Iceland 13011 C 4124 4124
326 Iceland 13012 A 4124 4124
327 Iceland 13013 G 4124 4124
328 Iceland 13014 T 4124 4124
329 Iceland 13015 A 4124 4124
330 Iceland 13016 C 4124 4124
331 Iceland 13017 G 4124 4124
332 Iceland 13018 T G 4124 4123 Arg4251Arg
333 Iceland 13019 C T 4124 4122 Leu4252Leu
334 Iceland 13020 T 4124 4124
335 Iceland 13021 A 4124 4124
336 Iceland 13022 C 4124 4124
337 Iceland 13023 A 4124 4124
338 Iceland 13024 A 4123 4123