National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                             1        
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6             1                        
N   21                     1                
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                               1      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Hungary 12686 A 278 278
1 Hungary 12687 A 278 278
2 Hungary 12688 T 278 278
3 Hungary 12689 A 278 278
4 Hungary 12690 A 278 278
5 Hungary 12691 T 278 278
6 Hungary 12692 G 278 278
7 Hungary 12693 A 278 278
8 Hungary 12694 G 278 278
9 Hungary 12695 C 278 277
10 Hungary 12696 T 278 278
11 Hungary 12697 T 278 278
12 Hungary 12698 A 278 278
13 Hungary 12699 G 278 278
14 Hungary 12700 T 278 278
15 Hungary 12701 C 278 278
16 Hungary 12702 C 278 278
17 Hungary 12703 T 278 278
18 Hungary 12704 G 278 278
19 Hungary 12705 T 278 278
20 Hungary 12706 T 278 278
21 Hungary 12707 G 278 278
22 Hungary 12708 C 278 278
23 Hungary 12709 A 278 278
24 Hungary 12710 C 278 278
25 Hungary 12711 T 278 278
26 Hungary 12712 A 278 278
27 Hungary 12713 C 278 278
28 Hungary 12714 G 278 278
29 Hungary 12715 A 278 278
30 Hungary 12716 C 278 278
31 Hungary 12717 A 278 278
32 Hungary 12718 G 278 278
33 Hungary 12719 A 278 278
34 Hungary 12720 T 278 278
35 Hungary 12721 G 278 278
36 Hungary 12722 T 278 278
37 Hungary 12723 C 278 278
38 Hungary 12724 T 278 278
39 Hungary 12725 T 278 278
40 Hungary 12726 G 278 278
41 Hungary 12727 T 278 278
42 Hungary 12728 G 278 278
43 Hungary 12729 C 278 278
44 Hungary 12730 T 278 278
45 Hungary 12731 G 278 278
46 Hungary 12732 C 278 278
47 Hungary 12733 C 278 278
48 Hungary 12734 G 278 278
49 Hungary 12735 G 278 278
50 Hungary 12736 T 278 278
51 Hungary 12737 A 278 278
52 Hungary 12738 C 278 278
53 Hungary 12739 T 278 278
54 Hungary 12740 A 278 278
55 Hungary 12741 C 278 278
56 Hungary 12742 A 278 278
57 Hungary 12743 C 278 278
58 Hungary 12744 A 278 278
59 Hungary 12745 A 278 278
60 Hungary 12746 A 278 278
61 Hungary 12747 C 278 278
62 Hungary 12748 T 278 278
63 Hungary 12749 G 278 278
64 Hungary 12750 C 278 278
65 Hungary 12751 T 278 278
66 Hungary 12752 T 278 278
67 Hungary 12753 G 278 278
68 Hungary 12754 C 278 278
69 Hungary 12755 A 278 278
70 Hungary 12756 C 278 278
71 Hungary 12757 T 278 278
72 Hungary 12758 G 278 278
73 Hungary 12759 A 278 278
74 Hungary 12760 T 278 278
75 Hungary 12761 G 278 278
76 Hungary 12762 A 278 278
77 Hungary 12763 C 278 278
78 Hungary 12764 A 278 278
79 Hungary 12765 A 278 278
80 Hungary 12766 T 278 278
81 Hungary 12767 G 278 278
82 Hungary 12768 C 278 278
83 Hungary 12769 G 278 278
84 Hungary 12770 T 278 278
85 Hungary 12771 T 278 278
86 Hungary 12772 A 278 278
87 Hungary 12773 G T 278 277 Ala4170Ser
88 Hungary 12774 C 278 278
89 Hungary 12775 T 278 278
90 Hungary 12776 T 278 278
91 Hungary 12777 A 278 278
92 Hungary 12778 C 278 278
93 Hungary 12779 T 278 278
94 Hungary 12780 A 278 278
95 Hungary 12781 C 278 278
96 Hungary 12782 A 278 278
97 Hungary 12783 A 278 278
98 Hungary 12784 C 278 278
99 Hungary 12785 A 278 278
100 Hungary 12786 C 278 278
101 Hungary 12787 A 278 278
102 Hungary 12788 A 278 278
103 Hungary 12789 C 278 278
104 Hungary 12790 A 278 278
105 Hungary 12791 A 278 278
106 Hungary 12792 A 278 278
107 Hungary 12793 G 278 278
108 Hungary 12794 G 278 278
109 Hungary 12795 G 278 278
110 Hungary 12796 A 278 278
111 Hungary 12797 G 278 278
112 Hungary 12798 G 278 278
113 Hungary 12799 T 278 278
114 Hungary 12800 A 278 278
115 Hungary 12801 G 278 278
116 Hungary 12802 G 278 278
117 Hungary 12803 T 278 278
118 Hungary 12804 T 278 278
119 Hungary 12805 T 278 278
120 Hungary 12806 G 278 278
121 Hungary 12807 T 278 278
122 Hungary 12808 A 278 278
123 Hungary 12809 C 278 278
124 Hungary 12810 T 278 278
125 Hungary 12811 T 278 278
126 Hungary 12812 G 278 278
127 Hungary 12813 C 278 278
128 Hungary 12814 A 278 278
129 Hungary 12815 C 278 278
130 Hungary 12816 T 278 278
131 Hungary 12817 G 278 278
132 Hungary 12818 T 278 278
133 Hungary 12819 T 278 278
134 Hungary 12820 A 278 278
135 Hungary 12821 T 278 278
136 Hungary 12822 C 278 278
137 Hungary 12823 C 278 278
138 Hungary 12824 G 278 278
139 Hungary 12825 A 278 278
140 Hungary 12826 T 278 278
141 Hungary 12827 T 278 278
142 Hungary 12828 T 278 278
143 Hungary 12829 A 278 278
144 Hungary 12830 C 278 278
145 Hungary 12831 A 278 278
146 Hungary 12832 G 278 278
147 Hungary 12833 G 278 278
148 Hungary 12834 A 278 278
149 Hungary 12835 T 278 278
150 Hungary 12836 T 278 278
151 Hungary 12837 T 278 278
152 Hungary 12838 G 278 278
153 Hungary 12839 A 278 278
154 Hungary 12840 A 278 278
155 Hungary 12841 A 278 278
156 Hungary 12842 T 278 278
157 Hungary 12843 G 278 278
158 Hungary 12844 G 278 278
159 Hungary 12845 G 278 278
160 Hungary 12846 C 278 278
161 Hungary 12847 T 278 278
162 Hungary 12848 A 278 278
163 Hungary 12849 G 278 278
164 Hungary 12850 A 278 278
165 Hungary 12851 T 278 278
166 Hungary 12852 T 278 278
167 Hungary 12853 C 278 278
168 Hungary 12854 C 278 278
169 Hungary 12855 C 278 278
170 Hungary 12856 T 278 278
171 Hungary 12857 A 278 278
172 Hungary 12858 A 278 278
173 Hungary 12859 G 278 278
174 Hungary 12860 A 278 278
175 Hungary 12861 G 278 278
176 Hungary 12862 T 278 278
177 Hungary 12863 G 278 278
178 Hungary 12864 A 278 278
179 Hungary 12865 T 278 278
180 Hungary 12866 G 278 278
181 Hungary 12867 G 278 278
182 Hungary 12868 A 278 278
183 Hungary 12869 A 278 278
184 Hungary 12870 C 278 278
185 Hungary 12871 T 278 278
186 Hungary 12872 G 278 278
187 Hungary 12873 G 278 278
188 Hungary 12874 T 278 278
189 Hungary 12875 A 278 278
190 Hungary 12876 C 278 278
191 Hungary 12877 T 278 278
192 Hungary 12878 A 278 278
193 Hungary 12879 T 278 278
194 Hungary 12880 C 278 278
195 Hungary 12881 T 278 278
196 Hungary 12882 A 278 278
197 Hungary 12883 T 278 278
198 Hungary 12884 A 278 278
199 Hungary 12885 C 278 278
200 Hungary 12886 A G 278 277 Thr4207Thr
201 Hungary 12887 G 278 278
202 Hungary 12888 A 278 278
203 Hungary 12889 A 278 278
204 Hungary 12890 C 278 278
205 Hungary 12891 T 278 278
206 Hungary 12892 G 278 278
207 Hungary 12893 G 278 278
208 Hungary 12894 A 278 278
209 Hungary 12895 A 278 278
210 Hungary 12896 C 278 278
211 Hungary 12897 C 278 278
212 Hungary 12898 A 278 278
213 Hungary 12899 C 278 278
214 Hungary 12900 C 278 278
215 Hungary 12901 T 278 278
216 Hungary 12902 T 278 278
217 Hungary 12903 G 278 278
218 Hungary 12904 T 278 278
219 Hungary 12905 A 278 278
220 Hungary 12906 G 278 278
221 Hungary 12907 G 278 278
222 Hungary 12908 T 278 278
223 Hungary 12909 T 278 278
224 Hungary 12910 T 278 278
225 Hungary 12911 G 278 278
226 Hungary 12912 T 278 278
227 Hungary 12913 T 278 278
228 Hungary 12914 A 278 278
229 Hungary 12915 C 278 278
230 Hungary 12916 A 278 278
231 Hungary 12917 G 278 278
232 Hungary 12918 A 278 278
233 Hungary 12919 C 278 278
234 Hungary 12920 A 278 278
235 Hungary 12921 C 278 278
236 Hungary 12922 A 278 278
237 Hungary 12923 C 278 278
238 Hungary 12924 C 278 278
239 Hungary 12925 T 278 278
240 Hungary 12926 A 278 278
241 Hungary 12927 A 278 278
242 Hungary 12928 A 278 278
243 Hungary 12929 G 278 278
244 Hungary 12930 G 278 278
245 Hungary 12931 T 278 278
246 Hungary 12932 C 278 278
247 Hungary 12933 C 278 278
248 Hungary 12934 T 278 278
249 Hungary 12935 A 278 278
250 Hungary 12936 A 278 278
251 Hungary 12937 A 278 278
252 Hungary 12938 G 278 278
253 Hungary 12939 T 278 278
254 Hungary 12940 G 278 278
255 Hungary 12941 A 278 278
256 Hungary 12942 A 278 278
257 Hungary 12943 G 278 278
258 Hungary 12944 T 278 278
259 Hungary 12945 A 278 278
260 Hungary 12946 T 278 278
261 Hungary 12947 T 278 278
262 Hungary 12948 T 278 278
263 Hungary 12949 A 278 278
264 Hungary 12950 T 278 278
265 Hungary 12951 A 278 278
266 Hungary 12952 C 278 278
267 Hungary 12953 T 278 278
268 Hungary 12954 T 278 278
269 Hungary 12955 T 278 278
270 Hungary 12956 A 278 278
271 Hungary 12957 T 278 278
272 Hungary 12958 T 278 278
273 Hungary 12959 A 278 278
274 Hungary 12960 A 278 278
275 Hungary 12961 A 278 278
276 Hungary 12962 G 278 278
277 Hungary 12963 G 278 278
278 Hungary 12964 A 278 278
279 Hungary 12965 T 278 278
280 Hungary 12966 T 278 278
281 Hungary 12967 A 278 278
282 Hungary 12968 A 278 278
283 Hungary 12969 A 278 278
284 Hungary 12970 C T 278 275 Asn4235Asn
285 Hungary 12971 A 278 278
286 Hungary 12972 A 278 278
287 Hungary 12973 C 278 278
288 Hungary 12974 C 278 278
289 Hungary 12975 T 278 278
290 Hungary 12976 A 278 278
291 Hungary 12977 A 278 278
292 Hungary 12978 A 278 278
293 Hungary 12979 T 278 278
294 Hungary 12980 A 278 278
295 Hungary 12981 G 278 278
296 Hungary 12982 A 278 278
297 Hungary 12983 G 278 278
298 Hungary 12984 G 278 278
299 Hungary 12985 T 278 278
300 Hungary 12986 A 278 278
301 Hungary 12987 T 278 278
302 Hungary 12988 G T 278 277 Met4241Ile
303 Hungary 12989 G 278 278
304 Hungary 12990 T 278 278
305 Hungary 12991 A 278 278
306 Hungary 12992 C 278 278
307 Hungary 12993 T 278 278
308 Hungary 12994 T 278 278
309 Hungary 12995 G 278 278
310 Hungary 12996 G 278 278
311 Hungary 12997 T 278 278
312 Hungary 12998 A 278 278
313 Hungary 12999 G 278 278
314 Hungary 13000 T 278 278
315 Hungary 13001 T 278 278
316 Hungary 13002 T 278 278
317 Hungary 13003 A 278 278
318 Hungary 13004 G 278 278
319 Hungary 13005 C 278 278
320 Hungary 13006 T 278 278
321 Hungary 13007 G 278 278
322 Hungary 13008 C 278 278
323 Hungary 13009 C 278 278
324 Hungary 13010 A 278 278
325 Hungary 13011 C 278 278
326 Hungary 13012 A 278 278
327 Hungary 13013 G 278 278
328 Hungary 13014 T 278 278
329 Hungary 13015 A 278 278
330 Hungary 13016 C 278 278
331 Hungary 13017 G 278 278
332 Hungary 13018 T 278 278
333 Hungary 13019 C 278 278
334 Hungary 13020 T 278 278
335 Hungary 13021 A 278 278
336 Hungary 13022 C 278 278
337 Hungary 13023 A 278 278
338 Hungary 13024 A 278 278