National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                               1      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Guatemala 12686 A 32 32
1 Guatemala 12687 A 32 32
2 Guatemala 12688 T 32 32
3 Guatemala 12689 A 32 32
4 Guatemala 12690 A 32 32
5 Guatemala 12691 T 32 32
6 Guatemala 12692 G 32 32
7 Guatemala 12693 A 32 32
8 Guatemala 12694 G 32 32
9 Guatemala 12695 C 32 32
10 Guatemala 12696 T 32 32
11 Guatemala 12697 T 32 32
12 Guatemala 12698 A 32 32
13 Guatemala 12699 G 32 32
14 Guatemala 12700 T 32 32
15 Guatemala 12701 C 32 32
16 Guatemala 12702 C 32 32
17 Guatemala 12703 T 32 32
18 Guatemala 12704 G 32 32
19 Guatemala 12705 T 32 32
20 Guatemala 12706 T 32 32
21 Guatemala 12707 G 32 32
22 Guatemala 12708 C 32 32
23 Guatemala 12709 A 32 32
24 Guatemala 12710 C 32 32
25 Guatemala 12711 T 32 32
26 Guatemala 12712 A 32 32
27 Guatemala 12713 C 32 32
28 Guatemala 12714 G 32 32
29 Guatemala 12715 A 32 32
30 Guatemala 12716 C 32 32
31 Guatemala 12717 A 32 32
32 Guatemala 12718 G 32 32
33 Guatemala 12719 A 32 32
34 Guatemala 12720 T 32 32
35 Guatemala 12721 G 32 32
36 Guatemala 12722 T 32 32
37 Guatemala 12723 C 32 32
38 Guatemala 12724 T 32 32
39 Guatemala 12725 T 32 32
40 Guatemala 12726 G 32 32
41 Guatemala 12727 T 32 32
42 Guatemala 12728 G 32 32
43 Guatemala 12729 C 32 32
44 Guatemala 12730 T 32 32
45 Guatemala 12731 G 32 32
46 Guatemala 12732 C 32 32
47 Guatemala 12733 C 32 32
48 Guatemala 12734 G 32 32
49 Guatemala 12735 G 32 32
50 Guatemala 12736 T 32 32
51 Guatemala 12737 A 32 32
52 Guatemala 12738 C 32 32
53 Guatemala 12739 T C 32 30 Thr4158Thr
54 Guatemala 12740 A 32 32
55 Guatemala 12741 C 32 32
56 Guatemala 12742 A 32 32
57 Guatemala 12743 C 32 32
58 Guatemala 12744 A 32 32
59 Guatemala 12745 A 32 32
60 Guatemala 12746 A 32 32
61 Guatemala 12747 C 32 32
62 Guatemala 12748 T 32 32
63 Guatemala 12749 G 32 32
64 Guatemala 12750 C 32 32
65 Guatemala 12751 T 32 32
66 Guatemala 12752 T 32 32
67 Guatemala 12753 G 32 32
68 Guatemala 12754 C 32 32
69 Guatemala 12755 A 32 32
70 Guatemala 12756 C 32 32
71 Guatemala 12757 T 32 32
72 Guatemala 12758 G 32 32
73 Guatemala 12759 A 32 32
74 Guatemala 12760 T 32 32
75 Guatemala 12761 G 32 32
76 Guatemala 12762 A 32 32
77 Guatemala 12763 C 32 32
78 Guatemala 12764 A 32 32
79 Guatemala 12765 A 32 32
80 Guatemala 12766 T 32 32
81 Guatemala 12767 G 32 32
82 Guatemala 12768 C 32 32
83 Guatemala 12769 G 32 32
84 Guatemala 12770 T 32 32
85 Guatemala 12771 T 32 32
86 Guatemala 12772 A 32 32
87 Guatemala 12773 G 32 32
88 Guatemala 12774 C 32 32
89 Guatemala 12775 T 32 32
90 Guatemala 12776 T 32 32
91 Guatemala 12777 A 32 32
92 Guatemala 12778 C 32 32
93 Guatemala 12779 T 32 32
94 Guatemala 12780 A 32 32
95 Guatemala 12781 C 32 32
96 Guatemala 12782 A 32 32
97 Guatemala 12783 A 32 32
98 Guatemala 12784 C 32 32
99 Guatemala 12785 A 32 32
100 Guatemala 12786 C 32 32
101 Guatemala 12787 A 32 32
102 Guatemala 12788 A 32 32
103 Guatemala 12789 C 32 32
104 Guatemala 12790 A 32 32
105 Guatemala 12791 A 32 32
106 Guatemala 12792 A 32 32
107 Guatemala 12793 G 32 32
108 Guatemala 12794 G 32 32
109 Guatemala 12795 G 32 32
110 Guatemala 12796 A 32 32
111 Guatemala 12797 G 32 32
112 Guatemala 12798 G 32 32
113 Guatemala 12799 T 32 32
114 Guatemala 12800 A 32 32
115 Guatemala 12801 G 32 32
116 Guatemala 12802 G 32 32
117 Guatemala 12803 T 32 32
118 Guatemala 12804 T 32 32
119 Guatemala 12805 T 32 32
120 Guatemala 12806 G 32 32
121 Guatemala 12807 T 32 32
122 Guatemala 12808 A 32 32
123 Guatemala 12809 C 32 32
124 Guatemala 12810 T 32 32
125 Guatemala 12811 T 32 32
126 Guatemala 12812 G 32 32
127 Guatemala 12813 C 32 32
128 Guatemala 12814 A 32 32
129 Guatemala 12815 C 32 32
130 Guatemala 12816 T 32 32
131 Guatemala 12817 G 32 32
132 Guatemala 12818 T 32 32
133 Guatemala 12819 T 32 32
134 Guatemala 12820 A 32 32
135 Guatemala 12821 T 32 32
136 Guatemala 12822 C 32 32
137 Guatemala 12823 C 32 32
138 Guatemala 12824 G 32 32
139 Guatemala 12825 A 32 32
140 Guatemala 12826 T 32 32
141 Guatemala 12827 T 32 32
142 Guatemala 12828 T 32 32
143 Guatemala 12829 A 32 32
144 Guatemala 12830 C 32 32
145 Guatemala 12831 A 32 32
146 Guatemala 12832 G 32 32
147 Guatemala 12833 G 32 32
148 Guatemala 12834 A 32 32
149 Guatemala 12835 T 32 32
150 Guatemala 12836 T 32 32
151 Guatemala 12837 T 32 32
152 Guatemala 12838 G 32 32
153 Guatemala 12839 A 32 32
154 Guatemala 12840 A 32 32
155 Guatemala 12841 A 32 32
156 Guatemala 12842 T 32 32
157 Guatemala 12843 G 32 32
158 Guatemala 12844 G 32 32
159 Guatemala 12845 G 32 32
160 Guatemala 12846 C 32 32
161 Guatemala 12847 T 32 32
162 Guatemala 12848 A 32 32
163 Guatemala 12849 G 32 32
164 Guatemala 12850 A 32 32
165 Guatemala 12851 T 32 32
166 Guatemala 12852 T 32 32
167 Guatemala 12853 C 32 32
168 Guatemala 12854 C 32 32
169 Guatemala 12855 C 32 32
170 Guatemala 12856 T 32 32
171 Guatemala 12857 A 32 32
172 Guatemala 12858 A 32 32
173 Guatemala 12859 G 32 32
174 Guatemala 12860 A 32 32
175 Guatemala 12861 G 32 32
176 Guatemala 12862 T 32 32
177 Guatemala 12863 G 32 32
178 Guatemala 12864 A 32 32
179 Guatemala 12865 T 32 32
180 Guatemala 12866 G 32 32
181 Guatemala 12867 G 32 32
182 Guatemala 12868 A 32 32
183 Guatemala 12869 A 32 32
184 Guatemala 12870 C 32 32
185 Guatemala 12871 T 32 32
186 Guatemala 12872 G 32 32
187 Guatemala 12873 G 32 32
188 Guatemala 12874 T 32 32
189 Guatemala 12875 A 32 32
190 Guatemala 12876 C 32 32
191 Guatemala 12877 T 32 32
192 Guatemala 12878 A 32 32
193 Guatemala 12879 T 32 32
194 Guatemala 12880 C 32 32
195 Guatemala 12881 T 32 32
196 Guatemala 12882 A 32 32
197 Guatemala 12883 T 32 32
198 Guatemala 12884 A 32 32
199 Guatemala 12885 C 32 32
200 Guatemala 12886 A 32 32
201 Guatemala 12887 G 32 32
202 Guatemala 12888 A 32 32
203 Guatemala 12889 A 32 32
204 Guatemala 12890 C 32 32
205 Guatemala 12891 T 32 32
206 Guatemala 12892 G 32 32
207 Guatemala 12893 G 32 32
208 Guatemala 12894 A 32 32
209 Guatemala 12895 A 32 32
210 Guatemala 12896 C 32 32
211 Guatemala 12897 C 32 32
212 Guatemala 12898 A 32 32
213 Guatemala 12899 C 32 32
214 Guatemala 12900 C 32 32
215 Guatemala 12901 T 32 32
216 Guatemala 12902 T 32 32
217 Guatemala 12903 G 32 32
218 Guatemala 12904 T 32 32
219 Guatemala 12905 A 32 32
220 Guatemala 12906 G 32 32
221 Guatemala 12907 G 32 32
222 Guatemala 12908 T 32 32
223 Guatemala 12909 T 32 32
224 Guatemala 12910 T 32 32
225 Guatemala 12911 G 32 32
226 Guatemala 12912 T 32 32
227 Guatemala 12913 T 32 32
228 Guatemala 12914 A 32 32
229 Guatemala 12915 C 32 32
230 Guatemala 12916 A 32 32
231 Guatemala 12917 G 32 32
232 Guatemala 12918 A 32 32
233 Guatemala 12919 C 32 32
234 Guatemala 12920 A 32 32
235 Guatemala 12921 C 32 32
236 Guatemala 12922 A 32 32
237 Guatemala 12923 C 32 32
238 Guatemala 12924 C 32 32
239 Guatemala 12925 T 32 32
240 Guatemala 12926 A 32 32
241 Guatemala 12927 A 32 32
242 Guatemala 12928 A 32 32
243 Guatemala 12929 G 32 32
244 Guatemala 12930 G 32 32
245 Guatemala 12931 T 32 32
246 Guatemala 12932 C 32 32
247 Guatemala 12933 C 32 32
248 Guatemala 12934 T 32 32
249 Guatemala 12935 A 32 32
250 Guatemala 12936 A 32 32
251 Guatemala 12937 A 32 32
252 Guatemala 12938 G 32 32
253 Guatemala 12939 T 32 32
254 Guatemala 12940 G 32 32
255 Guatemala 12941 A 32 32
256 Guatemala 12942 A 32 32
257 Guatemala 12943 G 32 32
258 Guatemala 12944 T 32 32
259 Guatemala 12945 A 32 32
260 Guatemala 12946 T 32 32
261 Guatemala 12947 T 32 32
262 Guatemala 12948 T 32 32
263 Guatemala 12949 A 32 32
264 Guatemala 12950 T 32 32
265 Guatemala 12951 A 32 32
266 Guatemala 12952 C 32 32
267 Guatemala 12953 T 32 32
268 Guatemala 12954 T 32 32
269 Guatemala 12955 T 32 32
270 Guatemala 12956 A 32 32
271 Guatemala 12957 T 32 32
272 Guatemala 12958 T 32 32
273 Guatemala 12959 A 32 32
274 Guatemala 12960 A 32 32
275 Guatemala 12961 A 32 32
276 Guatemala 12962 G 32 32
277 Guatemala 12963 G 32 32
278 Guatemala 12964 A 32 32
279 Guatemala 12965 T 32 32
280 Guatemala 12966 T 32 32
281 Guatemala 12967 A 32 32
282 Guatemala 12968 A 32 32
283 Guatemala 12969 A 32 32
284 Guatemala 12970 C 32 32
285 Guatemala 12971 A 32 32
286 Guatemala 12972 A 32 32
287 Guatemala 12973 C 32 32
288 Guatemala 12974 C 32 32
289 Guatemala 12975 T 32 32
290 Guatemala 12976 A 32 32
291 Guatemala 12977 A 32 32
292 Guatemala 12978 A 32 32
293 Guatemala 12979 T 32 32
294 Guatemala 12980 A 32 32
295 Guatemala 12981 G 32 32
296 Guatemala 12982 A 32 32
297 Guatemala 12983 G 32 32
298 Guatemala 12984 G 32 32
299 Guatemala 12985 T 32 32
300 Guatemala 12986 A 32 32
301 Guatemala 12987 T 32 32
302 Guatemala 12988 G 32 32
303 Guatemala 12989 G 32 32
304 Guatemala 12990 T 32 32
305 Guatemala 12991 A 32 32
306 Guatemala 12992 C 32 32
307 Guatemala 12993 T 32 32
308 Guatemala 12994 T 32 32
309 Guatemala 12995 G 32 32
310 Guatemala 12996 G 32 32
311 Guatemala 12997 T 32 32
312 Guatemala 12998 A 32 32
313 Guatemala 12999 G 32 32
314 Guatemala 13000 T 32 32
315 Guatemala 13001 T 32 32
316 Guatemala 13002 T 32 32
317 Guatemala 13003 A 32 32
318 Guatemala 13004 G 32 32
319 Guatemala 13005 C 32 32
320 Guatemala 13006 T 32 32
321 Guatemala 13007 G 32 32
322 Guatemala 13008 C 32 32
323 Guatemala 13009 C 32 32
324 Guatemala 13010 A 32 32
325 Guatemala 13011 C 32 32
326 Guatemala 13012 A 32 32
327 Guatemala 13013 G 32 32
328 Guatemala 13014 T 32 32
329 Guatemala 13015 A 32 32
330 Guatemala 13016 C 32 32
331 Guatemala 13017 G 32 32
332 Guatemala 13018 T 32 32
333 Guatemala 13019 C 32 32
334 Guatemala 13020 T 32 32
335 Guatemala 13021 A 32 32
336 Guatemala 13022 C 32 32
337 Guatemala 13023 A 32 32
338 Guatemala 13024 A 32 32