National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9   1                                  
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                     1                
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Greece 12686 A 137 137
1 Greece 12687 A 137 137
2 Greece 12688 T 137 137
3 Greece 12689 A 137 137
4 Greece 12690 A 137 137
5 Greece 12691 T 137 137
6 Greece 12692 G 137 137
7 Greece 12693 A 137 137
8 Greece 12694 G 137 137
9 Greece 12695 C 137 137
10 Greece 12696 T 137 137
11 Greece 12697 T 137 137
12 Greece 12698 A 137 137
13 Greece 12699 G 137 137
14 Greece 12700 T 137 137
15 Greece 12701 C 137 137
16 Greece 12702 C 137 137
17 Greece 12703 T 137 137
18 Greece 12704 G 137 137
19 Greece 12705 T 137 137
20 Greece 12706 T 137 137
21 Greece 12707 G 137 137
22 Greece 12708 C 137 137
23 Greece 12709 A 137 137
24 Greece 12710 C 137 137
25 Greece 12711 T 137 137
26 Greece 12712 A 137 137
27 Greece 12713 C 137 137
28 Greece 12714 G 137 137
29 Greece 12715 A 137 137
30 Greece 12716 C 137 137
31 Greece 12717 A 137 137
32 Greece 12718 G 137 137
33 Greece 12719 A 137 137
34 Greece 12720 T 137 137
35 Greece 12721 G 137 137
36 Greece 12722 T 137 137
37 Greece 12723 C 137 137
38 Greece 12724 T 137 137
39 Greece 12725 T 140 140
40 Greece 12726 G 140 140
41 Greece 12727 T 140 140
42 Greece 12728 G 140 140
43 Greece 12729 C 140 140
44 Greece 12730 T 140 140
45 Greece 12731 G 140 140
46 Greece 12732 C 140 140
47 Greece 12733 C 140 140
48 Greece 12734 G 140 140
49 Greece 12735 G 140 140
50 Greece 12736 T 140 140
51 Greece 12737 A 140 140
52 Greece 12738 C 140 140
53 Greece 12739 T 140 140
54 Greece 12740 A 140 140
55 Greece 12741 C 140 140
56 Greece 12742 A 140 140
57 Greece 12743 C 140 140
58 Greece 12744 A 140 140
59 Greece 12745 A 140 140
60 Greece 12746 A 140 140
61 Greece 12747 C 140 140
62 Greece 12748 T 140 140
63 Greece 12749 G 140 140
64 Greece 12750 C 140 140
65 Greece 12751 T 140 140
66 Greece 12752 T 140 140
67 Greece 12753 G 140 140
68 Greece 12754 C T 140 138 Cys4163Cys
69 Greece 12755 A 140 140
70 Greece 12756 C 140 140
71 Greece 12757 T 140 140
72 Greece 12758 G 140 140
73 Greece 12759 A 140 140
74 Greece 12760 T 140 140
75 Greece 12761 G 140 140
76 Greece 12762 A 140 140
77 Greece 12763 C 140 140
78 Greece 12764 A 140 140
79 Greece 12765 A 140 140
80 Greece 12766 T 140 140
81 Greece 12767 G 140 140
82 Greece 12768 C 140 140
83 Greece 12769 G 140 140
84 Greece 12770 T 140 140
85 Greece 12771 T 140 140
86 Greece 12772 A 140 140
87 Greece 12773 G 140 140
88 Greece 12774 C 140 140
89 Greece 12775 T 140 140
90 Greece 12776 T 140 140
91 Greece 12777 A 140 140
92 Greece 12778 C 140 140
93 Greece 12779 T 140 140
94 Greece 12780 A 140 140
95 Greece 12781 C 140 140
96 Greece 12782 A 140 140
97 Greece 12783 A 140 140
98 Greece 12784 C 140 140
99 Greece 12785 A 140 140
100 Greece 12786 C 140 140
101 Greece 12787 A 140 140
102 Greece 12788 A 140 140
103 Greece 12789 C 140 140
104 Greece 12790 A 140 140
105 Greece 12791 A 140 140
106 Greece 12792 A 140 140
107 Greece 12793 G 140 140
108 Greece 12794 G 140 140
109 Greece 12795 G 140 140
110 Greece 12796 A 140 140
111 Greece 12797 G 139 139
112 Greece 12798 G 139 139
113 Greece 12799 T 139 139
114 Greece 12800 A 139 139
115 Greece 12801 G 139 139
116 Greece 12802 G 139 139
117 Greece 12803 T 139 139
118 Greece 12804 T 139 139
119 Greece 12805 T 139 139
120 Greece 12806 G 139 139
121 Greece 12807 T 139 139
122 Greece 12808 A 139 139
123 Greece 12809 C 139 139
124 Greece 12810 T 139 139
125 Greece 12811 T 139 139
126 Greece 12812 G 139 139
127 Greece 12813 C 139 139
128 Greece 12814 A 139 139
129 Greece 12815 C 139 139
130 Greece 12816 T 139 139
131 Greece 12817 G 139 139
132 Greece 12818 T 139 139
133 Greece 12819 T 139 139
134 Greece 12820 A 139 139
135 Greece 12821 T 139 139
136 Greece 12822 C 139 139
137 Greece 12823 C 139 139
138 Greece 12824 G 139 139
139 Greece 12825 A 139 139
140 Greece 12826 T 139 139
141 Greece 12827 T 139 139
142 Greece 12828 T 139 139
143 Greece 12829 A 139 139
144 Greece 12830 C 139 139
145 Greece 12831 A 139 139
146 Greece 12832 G 139 139
147 Greece 12833 G 139 139
148 Greece 12834 A 139 139
149 Greece 12835 T 139 139
150 Greece 12836 T 139 139
151 Greece 12837 T 139 139
152 Greece 12838 G 139 139
153 Greece 12839 A 139 139
154 Greece 12840 A 139 139
155 Greece 12841 A 139 139
156 Greece 12842 T 139 139
157 Greece 12843 G 139 139
158 Greece 12844 G 139 139
159 Greece 12845 G 139 139
160 Greece 12846 C 139 139
161 Greece 12847 T 139 139
162 Greece 12848 A 139 139
163 Greece 12849 G 139 139
164 Greece 12850 A 139 139
165 Greece 12851 T 139 139
166 Greece 12852 T 139 139
167 Greece 12853 C 139 139
168 Greece 12854 C 139 139
169 Greece 12855 C 139 139
170 Greece 12856 T 139 139
171 Greece 12857 A 139 139
172 Greece 12858 A 139 139
173 Greece 12859 G 139 139
174 Greece 12860 A 139 139
175 Greece 12861 G 139 139
176 Greece 12862 T 139 139
177 Greece 12863 G 139 139
178 Greece 12864 A 139 139
179 Greece 12865 T 139 139
180 Greece 12866 G 139 139
181 Greece 12867 G 139 139
182 Greece 12868 A 139 139
183 Greece 12869 A 139 139
184 Greece 12870 C 139 139
185 Greece 12871 T 139 139
186 Greece 12872 G 139 139
187 Greece 12873 G 139 139
188 Greece 12874 T 139 139
189 Greece 12875 A 139 139
190 Greece 12876 C 139 139
191 Greece 12877 T 139 139
192 Greece 12878 A 139 139
193 Greece 12879 T 139 139
194 Greece 12880 C 139 139
195 Greece 12881 T 139 139
196 Greece 12882 A 139 139
197 Greece 12883 T 139 139
198 Greece 12884 A 139 139
199 Greece 12885 C 139 139
200 Greece 12886 A 139 139
201 Greece 12887 G 139 139
202 Greece 12888 A 139 139
203 Greece 12889 A 139 139
204 Greece 12890 C 139 139
205 Greece 12891 T 139 139
206 Greece 12892 G 139 139
207 Greece 12893 G 139 139
208 Greece 12894 A 139 139
209 Greece 12895 A 139 139
210 Greece 12896 C 139 139
211 Greece 12897 C 139 139
212 Greece 12898 A 139 139
213 Greece 12899 C 139 139
214 Greece 12900 C 139 139
215 Greece 12901 T 139 139
216 Greece 12902 T 139 139
217 Greece 12903 G 139 139
218 Greece 12904 T 139 139
219 Greece 12905 A 139 139
220 Greece 12906 G 139 139
221 Greece 12907 G 139 139
222 Greece 12908 T 139 139
223 Greece 12909 T 139 139
224 Greece 12910 T 139 139
225 Greece 12911 G 139 139
226 Greece 12912 T 139 139
227 Greece 12913 T 139 139
228 Greece 12914 A 139 139
229 Greece 12915 C 139 139
230 Greece 12916 A 139 139
231 Greece 12917 G 139 139
232 Greece 12918 A 139 139
233 Greece 12919 C 139 139
234 Greece 12920 A 139 139
235 Greece 12921 C 139 139
236 Greece 12922 A 139 139
237 Greece 12923 C 139 139
238 Greece 12924 C 139 139
239 Greece 12925 T 139 139
240 Greece 12926 A 139 139
241 Greece 12927 A 139 139
242 Greece 12928 A 139 139
243 Greece 12929 G 139 139
244 Greece 12930 G 139 139
245 Greece 12931 T 136 136
246 Greece 12932 C 136 136
247 Greece 12933 C 136 136
248 Greece 12934 T 136 136
249 Greece 12935 A 136 136
250 Greece 12936 A 136 136
251 Greece 12937 A 136 136
252 Greece 12938 G 136 136
253 Greece 12939 T 136 136
254 Greece 12940 G 136 136
255 Greece 12941 A 136 136
256 Greece 12942 A 136 136
257 Greece 12943 G 136 136
258 Greece 12944 T 136 136
259 Greece 12945 A 136 136
260 Greece 12946 T 136 136
261 Greece 12947 T 136 136
262 Greece 12948 T 136 136
263 Greece 12949 A 136 136
264 Greece 12950 T 136 136
265 Greece 12951 A 136 136
266 Greece 12952 C 136 136
267 Greece 12953 T 136 136
268 Greece 12954 T 136 136
269 Greece 12955 T 136 136
270 Greece 12956 A 136 136
271 Greece 12957 T 136 136
272 Greece 12958 T 136 136
273 Greece 12959 A 136 136
274 Greece 12960 A 136 136
275 Greece 12961 A 136 136
276 Greece 12962 G 136 136
277 Greece 12963 G 136 136
278 Greece 12964 A 136 136
279 Greece 12965 T 136 136
280 Greece 12966 T 136 136
281 Greece 12967 A 136 136
282 Greece 12968 A 136 136
283 Greece 12969 A 136 136
284 Greece 12970 C T 136 135 Asn4235Asn
285 Greece 12971 A 136 136
286 Greece 12972 A 136 136
287 Greece 12973 C 136 136
288 Greece 12974 C 136 136
289 Greece 12975 T 136 136
290 Greece 12976 A 136 136
291 Greece 12977 A 136 136
292 Greece 12978 A 136 136
293 Greece 12979 T 136 136
294 Greece 12980 A 136 136
295 Greece 12981 G 136 136
296 Greece 12982 A 136 136
297 Greece 12983 G 136 136
298 Greece 12984 G 136 136
299 Greece 12985 T 136 136
300 Greece 12986 A 136 136
301 Greece 12987 T 136 136
302 Greece 12988 G 136 136
303 Greece 12989 G 136 136
304 Greece 12990 T 136 136
305 Greece 12991 A 136 136
306 Greece 12992 C 136 136
307 Greece 12993 T 136 136
308 Greece 12994 T 136 136
309 Greece 12995 G 136 136
310 Greece 12996 G 136 136
311 Greece 12997 T 136 136
312 Greece 12998 A 136 136
313 Greece 12999 G 136 136
314 Greece 13000 T 136 136
315 Greece 13001 T 136 136
316 Greece 13002 T 136 136
317 Greece 13003 A 136 136
318 Greece 13004 G 136 136
319 Greece 13005 C 136 136
320 Greece 13006 T 136 136
321 Greece 13007 G 136 136
322 Greece 13008 C 136 136
323 Greece 13009 C 136 136
324 Greece 13010 A 136 136
325 Greece 13011 C 136 136
326 Greece 13012 A 136 136
327 Greece 13013 G 136 136
328 Greece 13014 T 136 136
329 Greece 13015 A 136 136
330 Greece 13016 C 136 136
331 Greece 13017 G 136 136
332 Greece 13018 T 136 136
333 Greece 13019 C 136 136
334 Greece 13020 T 136 136
335 Greece 13021 A 136 136
336 Greece 13022 C 136 136
337 Greece 13023 A 136 136
338 Greece 13024 A 136 136