National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N P Q R S T V W Y
-   339                                        
?                                            
A   30 4                             1        
C   9   1                                    
D   18     1     1           1               1
E   9                                        
F   12                                        
G   27                             2 1        
H                                            
I   6               1                        
K   21                 2     1                
L   45         1         6                    
M   6               2                        
N   21                       4                
P   18                   2           1 1      
Q   12             1   1                      
R   18                                        
S   15           1                   1        
T   36 1             7       1         3      
V   18 1       1                         1    
W   3                                        
Y   15                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Germany 12686 A 4471 4471
1 Germany 12687 A 4471 4471
2 Germany 12688 T 4471 4471
3 Germany 12689 A 4471 4471
4 Germany 12690 A 4471 4471
5 Germany 12691 T 4471 4471
6 Germany 12692 G 4471 4471
7 Germany 12693 A 4471 4471
8 Germany 12694 G 4471 4471
9 Germany 12695 C 4471 4471
10 Germany 12696 T 4471 4471
11 Germany 12697 T 4471 4471
12 Germany 12698 A 4471 4471
13 Germany 12699 G 4471 4471
14 Germany 12700 T 4471 4471
15 Germany 12701 C 4471 4471
16 Germany 12702 C 4471 4471
17 Germany 12703 T 4471 4471
18 Germany 12704 G T 4471 4469 Val4147Phe
19 Germany 12705 T C 4471 4469 Val4147Ala
20 Germany 12706 T 4471 4471
21 Germany 12707 G 4471 4471
22 Germany 12708 C 4471 4470
23 Germany 12709 A 4471 4470
24 Germany 12710 C T 4472 4470 Leu4149Leu
25 Germany 12711 T 4473 4472
26 Germany 12712 A 4475 4474
27 Germany 12713 C 4475 4474
28 Germany 12714 G 4476 4476
29 Germany 12715 A 4478 4477
30 Germany 12716 C 4480 4480
31 Germany 12717 A 4480 4479
32 Germany 12718 G 4481 4480
33 Germany 12719 A 4481 4480
34 Germany 12720 T 4481 4480
35 Germany 12721 G A 4482 4467 Met4152Ile
36 Germany 12722 T 4482 4482
37 Germany 12723 C 4482 4482
38 Germany 12724 T 4482 4482
39 Germany 12725 T 4482 4482
40 Germany 12726 G 4482 4482
41 Germany 12727 T 4482 4482
42 Germany 12728 G 4482 4482
43 Germany 12729 C 4482 4482
44 Germany 12730 T C 4482 4480 Ala4155Ala
45 Germany 12731 G 4482 4482
46 Germany 12732 C 4482 4482
47 Germany 12733 C A 4483 4480 Ala4156Ala
48 Germany 12734 G 4483 4483
49 Germany 12735 G 4483 4482
50 Germany 12736 T 4483 4482
51 Germany 12737 A 4482 4481
52 Germany 12738 C T 4482 4472 Thr4158Ile
53 Germany 12739 T 4482 4481
54 Germany 12740 A 4482 4482
55 Germany 12741 C T 4482 4480 Thr4159Ile
56 Germany 12742 A 4482 4482
57 Germany 12743 C 4482 4482
58 Germany 12744 A 4484 4484
59 Germany 12745 A 4484 4484
60 Germany 12746 A 4484 4484
61 Germany 12747 C A,T 4484 4466 Thr4161Asn-p.Thr4161Ile
62 Germany 12748 T A 4484 4483 Thr4161Thr
63 Germany 12749 G 4484 4484
64 Germany 12750 C 4484 4484
65 Germany 12751 T 4484 4484
66 Germany 12752 T 4484 4483
67 Germany 12753 G 4484 4483
68 Germany 12754 C T 4484 4482 Cys4163Cys
69 Germany 12755 A G 4484 4482 Thr4164Ala
70 Germany 12756 C T 4484 4478 Thr4164Ile
71 Germany 12757 T 4484 4483
72 Germany 12758 G 4484 4483
73 Germany 12759 A G 4484 4479 Asp4165Gly
74 Germany 12760 T 4484 4483
75 Germany 12761 G 4484 4482
76 Germany 12762 A 4484 4482
77 Germany 12763 C T 4484 4481 Asp4166Asp
78 Germany 12764 A 4484 4482
79 Germany 12765 A 4484 4482
80 Germany 12766 T 4484 4482
81 Germany 12767 G 4484 4482
82 Germany 12768 C 4484 4482
83 Germany 12769 G T 4484 4479 Ala4168Ala
84 Germany 12770 T 4485 4483
85 Germany 12771 T 4485 4483
86 Germany 12772 A 4485 4483
87 Germany 12773 G 4485 4483
88 Germany 12774 C 4485 4484
89 Germany 12775 T 4485 4483
90 Germany 12776 T 4485 4484
91 Germany 12777 A 4485 4484
92 Germany 12778 C T 4485 4483 Tyr4171Tyr
93 Germany 12779 T 4485 4484
94 Germany 12780 A 4484 4483
95 Germany 12781 C 4483 4482
96 Germany 12782 A 4483 4482
97 Germany 12783 A 4483 4482
98 Germany 12784 C T 4483 4480 Asn4173Asn
99 Germany 12785 A 4483 4482
100 Germany 12786 C 4483 4482
101 Germany 12787 A 4482 4481
102 Germany 12788 A 4482 4481
103 Germany 12789 C 4482 4481
104 Germany 12790 A G 4482 4479 Thr4175Thr
105 Germany 12791 A 4482 4481
106 Germany 12792 A 4482 4481
107 Germany 12793 G T 4482 4473 Lys4176Asn
108 Germany 12794 G A 4482 4477 Gly4177Arg
109 Germany 12795 G 4482 4481
110 Germany 12796 A 4479 4478
111 Germany 12797 G A 4476 4471 Gly4178Ser
112 Germany 12798 G 4476 4475
113 Germany 12799 T 4476 4475
114 Germany 12800 A 4476 4475
115 Germany 12801 G 4476 4475
116 Germany 12802 G 4478 4478
117 Germany 12803 T 4478 4478
118 Germany 12804 T 4478 4478
119 Germany 12805 T 4478 4478
120 Germany 12806 G 4478 4478
121 Germany 12807 T 4478 4478
122 Germany 12808 A 4478 4478
123 Germany 12809 C T 4477 4445 Leu4182Phe
124 Germany 12810 T 4476 4476
125 Germany 12811 T 4476 4476
126 Germany 12812 G 4476 4476
127 Germany 12813 C 4476 4476
128 Germany 12814 A 4476 4476
129 Germany 12815 C 4476 4476
130 Germany 12816 T 4476 4476
131 Germany 12817 G 4476 4476
132 Germany 12818 T 4476 4476
133 Germany 12819 T 4476 4476
134 Germany 12820 A G 4476 4475 Leu4185Leu
135 Germany 12821 T 4476 4476
136 Germany 12822 C 4476 4476
137 Germany 12823 C T 4476 4446 Ser4186Ser
138 Germany 12824 G A 4476 4468 Asp4187Asn
139 Germany 12825 A 4476 4476
140 Germany 12826 T 4476 4476
141 Germany 12827 T 4476 4476
142 Germany 12828 T 4476 4476
143 Germany 12829 A 4476 4476
144 Germany 12830 C A 4476 4472 Gln4189Lys
145 Germany 12831 A 4476 4476
146 Germany 12832 G T 4476 4475 Gln4189His
147 Germany 12833 G 4476 4476
148 Germany 12834 A 4476 4476
149 Germany 12835 T 4476 4476
150 Germany 12836 T 4476 4476
151 Germany 12837 T 4476 4476
152 Germany 12838 G 4476 4476
153 Germany 12839 A 4476 4476
154 Germany 12840 A 4476 4476
155 Germany 12841 A 4476 4476
156 Germany 12842 T 4476 4476
157 Germany 12843 G 4476 4476
158 Germany 12844 G 4476 4476
159 Germany 12845 G T 4476 4475 Ala4194Ser
160 Germany 12846 C 4476 4476
161 Germany 12847 T 4476 4476
162 Germany 12848 A 4476 4476
163 Germany 12849 G 4476 4476
164 Germany 12850 A 4476 4476
165 Germany 12851 T 4476 4476
166 Germany 12852 T 4476 4476
167 Germany 12853 C 4476 4476
168 Germany 12854 C T 4476 4474 Pro4197Ser
169 Germany 12855 C 4476 4476
170 Germany 12856 T 4476 4476
171 Germany 12857 A 4476 4476
172 Germany 12858 A 4476 4476
173 Germany 12859 G 4476 4476
174 Germany 12860 A G 4476 4475 Ser4199Gly
175 Germany 12861 G 4476 4476
176 Germany 12862 T 4476 4476
177 Germany 12863 G 4476 4476
178 Germany 12864 A 4476 4476
179 Germany 12865 T 4476 4476
180 Germany 12866 G A 4476 4475 Gly4201Arg
181 Germany 12867 G 4476 4476
182 Germany 12868 A 4476 4476
183 Germany 12869 A 4475 4475
184 Germany 12870 C T 4475 4473 Thr4202Ile
185 Germany 12871 T 4475 4475
186 Germany 12872 G 4475 4474
187 Germany 12873 G 4475 4474
188 Germany 12874 T 4475 4474
189 Germany 12875 A 4475 4474
190 Germany 12876 C 4475 4474
191 Germany 12877 T 4475 4474
192 Germany 12878 A 4475 4473
193 Germany 12879 T 4475 4473
194 Germany 12880 C T 4475 4472 Ile4205Ile
195 Germany 12881 T 4475 4473
196 Germany 12882 A 4475 4473
197 Germany 12883 T 4475 4473
198 Germany 12884 A 4475 4473
199 Germany 12885 C T 4475 4470 Thr4207Ile
200 Germany 12886 A 4474 4473
201 Germany 12887 G 4474 4473
202 Germany 12888 A 4474 4473
203 Germany 12889 A 4474 4473
204 Germany 12890 C T 4474 4472 Leu4209Leu
205 Germany 12891 T 4474 4473
206 Germany 12892 G A 4474 4472 Leu4209Leu
207 Germany 12893 G 4474 4473
208 Germany 12894 A 4476 4475
209 Germany 12895 A 4476 4475
210 Germany 12896 C 4476 4475
211 Germany 12897 C 4476 4474
212 Germany 12898 A 4476 4475
213 Germany 12899 C 4476 4475
214 Germany 12900 C 4476 4474
215 Germany 12901 T 4476 4473
216 Germany 12902 T 4476 4474
217 Germany 12903 G 4476 4474
218 Germany 12904 T 4476 4474
219 Germany 12905 A 4476 4474
220 Germany 12906 G 4476 4474
221 Germany 12907 G 4476 4474
222 Germany 12908 T 4476 4474
223 Germany 12909 T 4476 4474
224 Germany 12910 T 4476 4474
225 Germany 12911 G 4476 4474
226 Germany 12912 T 4476 4474
227 Germany 12913 T 4476 4474
228 Germany 12914 A 4476 4474
229 Germany 12915 C 4476 4474
230 Germany 12916 A 4476 4474
231 Germany 12917 G T 4476 4473 Asp4218Tyr
232 Germany 12918 A 4476 4474
233 Germany 12919 C 4476 4474
234 Germany 12920 A 4476 4473
235 Germany 12921 C 4476 4473
236 Germany 12922 A G 4476 4470 Thr4219Thr
237 Germany 12923 C A 4476 4473 Pro4220Thr
238 Germany 12924 C T 4476 4465 Pro4220Leu
239 Germany 12925 T 4476 4473
240 Germany 12926 A 4476 4473
241 Germany 12927 A 4476 4473
242 Germany 12928 A G 4476 4472 Lys4221Lys
243 Germany 12929 G 4476 4473
244 Germany 12930 G 4476 4473
245 Germany 12931 T 4476 4474
246 Germany 12932 C 4476 4474
247 Germany 12933 C T 4476 4473 Pro4223Leu
248 Germany 12934 T 4476 4475
249 Germany 12935 A 4476 4475
250 Germany 12936 A 4476 4475
251 Germany 12937 A 4476 4475
252 Germany 12938 G 4476 4475
253 Germany 12939 T 4476 4473
254 Germany 12940 G 4476 4473
255 Germany 12941 A 4476 4472
256 Germany 12942 A 4476 4472
257 Germany 12943 G A 4476 4471 Lys4226Lys
258 Germany 12944 T 4476 4472
259 Germany 12945 A 4476 4472
260 Germany 12946 T 4476 4472
261 Germany 12947 T 4476 4473
262 Germany 12948 T 4476 4473
263 Germany 12949 A 4476 4473
264 Germany 12950 T 4476 4473
265 Germany 12951 A 4476 4473
266 Germany 12952 C 4476 4473
267 Germany 12953 T 4476 4473
268 Germany 12954 T 4476 4472
269 Germany 12955 T 4476 4473
270 Germany 12956 A 4476 4473
271 Germany 12957 T 4476 4474
272 Germany 12958 T 4476 4474
273 Germany 12959 A 4476 4474
274 Germany 12960 A 4476 4474
275 Germany 12961 A 4476 4474
276 Germany 12962 G 4476 4474
277 Germany 12963 G 4476 4474
278 Germany 12964 A 4476 4474
279 Germany 12965 T C 4476 4471 Leu4234Leu
280 Germany 12966 T 4476 4474
281 Germany 12967 A 4476 4475
282 Germany 12968 A 4476 4475
283 Germany 12969 A 4476 4475
284 Germany 12970 C T 4476 4472 Asn4235Asn
285 Germany 12971 A 4476 4475
286 Germany 12972 A 4476 4475
287 Germany 12973 C T 4476 4474 Asn4236Asn
288 Germany 12974 C 4476 4475
289 Germany 12975 T 4476 4475
290 Germany 12976 A 4476 4476
291 Germany 12977 A 4476 4476
292 Germany 12978 A 4476 4476
293 Germany 12979 T C 4476 4475 Asn4238Asn
294 Germany 12980 A 4476 4476
295 Germany 12981 G 4476 4476
296 Germany 12982 A 4476 4476
297 Germany 12983 G 4476 4476
298 Germany 12984 G 4475 4475
299 Germany 12985 T 4475 4475
300 Germany 12986 A 4475 4475
301 Germany 12987 T 4475 4475
302 Germany 12988 G T 4475 4338 Met4241Ile
303 Germany 12989 G 4475 4475
304 Germany 12990 T 4475 4475
305 Germany 12991 A 4475 4475
306 Germany 12992 C 4475 4475
307 Germany 12993 T 4475 4475
308 Germany 12994 T 4475 4475
309 Germany 12995 G 4475 4475
310 Germany 12996 G 4475 4475
311 Germany 12997 T 4474 4474
312 Germany 12998 A 4474 4474
313 Germany 12999 G 4474 4474
314 Germany 13000 T 4474 4474
315 Germany 13001 T 4474 4474
316 Germany 13002 T 4474 4474
317 Germany 13003 A 4474 4474
318 Germany 13004 G 4474 4474
319 Germany 13005 C 4474 4474
320 Germany 13006 T C 4474 4469 Ala4247Ala
321 Germany 13007 G 4474 4474
322 Germany 13008 C 4474 4474
323 Germany 13009 C 4474 4474
324 Germany 13010 A 4471 4471
325 Germany 13011 C T 4471 4466 Thr4249Ile
326 Germany 13012 A 4471 4471
327 Germany 13013 G 4471 4471
328 Germany 13014 T 4471 4471
329 Germany 13015 A G 4471 4469 Val4250Val
330 Germany 13016 C 4471 4471
331 Germany 13017 G 4471 4471
332 Germany 13018 T 4471 4471
333 Germany 13019 C T 4471 4466 Leu4252Leu
334 Germany 13020 T 4471 4471
335 Germany 13021 A 4471 4471
336 Germany 13022 C 4471 4471
337 Germany 13023 A 4471 4471
338 Germany 13024 A 4471 4471