National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Georgia 12686 A 26 25
1 Georgia 12687 A 26 25
2 Georgia 12688 T 26 25
3 Georgia 12689 A 26 25
4 Georgia 12690 A 26 25
5 Georgia 12691 T 26 25
6 Georgia 12692 G 26 25
7 Georgia 12693 A 26 25
8 Georgia 12694 G 26 25
9 Georgia 12695 C 26 25
10 Georgia 12696 T 26 25
11 Georgia 12697 T 26 25
12 Georgia 12698 A 26 25
13 Georgia 12699 G 26 25
14 Georgia 12700 T 26 25
15 Georgia 12701 C 26 25
16 Georgia 12702 C 26 25
17 Georgia 12703 T 26 25
18 Georgia 12704 G 26 25
19 Georgia 12705 T 26 25
20 Georgia 12706 T 26 25
21 Georgia 12707 G 26 25
22 Georgia 12708 C 26 25
23 Georgia 12709 A 26 25
24 Georgia 12710 C 26 25
25 Georgia 12711 T 26 25
26 Georgia 12712 A 26 25
27 Georgia 12713 C 26 25
28 Georgia 12714 G 26 25
29 Georgia 12715 A 26 25
30 Georgia 12716 C 26 25
31 Georgia 12717 A 26 25
32 Georgia 12718 G 26 25
33 Georgia 12719 A 26 25
34 Georgia 12720 T 26 25
35 Georgia 12721 G 26 25
36 Georgia 12722 T 26 25
37 Georgia 12723 C 26 25
38 Georgia 12724 T 26 25
39 Georgia 12725 T 26 25
40 Georgia 12726 G 26 25
41 Georgia 12727 T 26 25
42 Georgia 12728 G 26 25
43 Georgia 12729 C 26 25
44 Georgia 12730 T 26 25
45 Georgia 12731 G 26 25
46 Georgia 12732 C 26 25
47 Georgia 12733 C 26 25
48 Georgia 12734 G 26 25
49 Georgia 12735 G 26 25
50 Georgia 12736 T 26 25
51 Georgia 12737 A 26 25
52 Georgia 12738 C 26 25
53 Georgia 12739 T 26 25
54 Georgia 12740 A 26 25
55 Georgia 12741 C 26 25
56 Georgia 12742 A 26 25
57 Georgia 12743 C 26 25
58 Georgia 12744 A 26 25
59 Georgia 12745 A 26 25
60 Georgia 12746 A 26 25
61 Georgia 12747 C 26 25
62 Georgia 12748 T 26 25
63 Georgia 12749 G 26 25
64 Georgia 12750 C 26 25
65 Georgia 12751 T 26 25
66 Georgia 12752 T 26 25
67 Georgia 12753 G 26 25
68 Georgia 12754 C 26 25
69 Georgia 12755 A 26 25
70 Georgia 12756 C 26 25
71 Georgia 12757 T 26 25
72 Georgia 12758 G 26 25
73 Georgia 12759 A 26 25
74 Georgia 12760 T 26 25
75 Georgia 12761 G 26 25
76 Georgia 12762 A 26 25
77 Georgia 12763 C 26 25
78 Georgia 12764 A 26 25
79 Georgia 12765 A 26 25
80 Georgia 12766 T 26 25
81 Georgia 12767 G 26 25
82 Georgia 12768 C 26 25
83 Georgia 12769 G 26 25
84 Georgia 12770 T 26 25
85 Georgia 12771 T 26 25
86 Georgia 12772 A 26 25
87 Georgia 12773 G 26 25
88 Georgia 12774 C 26 25
89 Georgia 12775 T 26 25
90 Georgia 12776 T 26 25
91 Georgia 12777 A 26 25
92 Georgia 12778 C 26 25
93 Georgia 12779 T 26 25
94 Georgia 12780 A 26 25
95 Georgia 12781 C 26 25
96 Georgia 12782 A 26 25
97 Georgia 12783 A 26 25
98 Georgia 12784 C 26 25
99 Georgia 12785 A 26 25
100 Georgia 12786 C 26 25
101 Georgia 12787 A 26 25
102 Georgia 12788 A 26 25
103 Georgia 12789 C 26 25
104 Georgia 12790 A 26 25
105 Georgia 12791 A 26 25
106 Georgia 12792 A 26 25
107 Georgia 12793 G 26 25
108 Georgia 12794 G 26 25
109 Georgia 12795 G 26 25
110 Georgia 12796 A 26 25
111 Georgia 12797 G 26 25
112 Georgia 12798 G 26 25
113 Georgia 12799 T 26 25
114 Georgia 12800 A 26 25
115 Georgia 12801 G 26 25
116 Georgia 12802 G 26 25
117 Georgia 12803 T 26 25
118 Georgia 12804 T 26 25
119 Georgia 12805 T 26 25
120 Georgia 12806 G 26 25
121 Georgia 12807 T 26 25
122 Georgia 12808 A 26 25
123 Georgia 12809 C 26 25
124 Georgia 12810 T 26 25
125 Georgia 12811 T 26 25
126 Georgia 12812 G 26 25
127 Georgia 12813 C 26 25
128 Georgia 12814 A 26 25
129 Georgia 12815 C 26 25
130 Georgia 12816 T 26 25
131 Georgia 12817 G 26 25
132 Georgia 12818 T 26 25
133 Georgia 12819 T 26 25
134 Georgia 12820 A 26 25
135 Georgia 12821 T 26 25
136 Georgia 12822 C 26 25
137 Georgia 12823 C 26 25
138 Georgia 12824 G 26 25
139 Georgia 12825 A 26 25
140 Georgia 12826 T 26 25
141 Georgia 12827 T 26 25
142 Georgia 12828 T 26 25
143 Georgia 12829 A 26 25
144 Georgia 12830 C 26 25
145 Georgia 12831 A 26 25
146 Georgia 12832 G 26 25
147 Georgia 12833 G 26 25
148 Georgia 12834 A 26 25
149 Georgia 12835 T 26 25
150 Georgia 12836 T 26 25
151 Georgia 12837 T 26 25
152 Georgia 12838 G 26 25
153 Georgia 12839 A 26 25
154 Georgia 12840 A 26 25
155 Georgia 12841 A 26 25
156 Georgia 12842 T 26 25
157 Georgia 12843 G 26 25
158 Georgia 12844 G 26 25
159 Georgia 12845 G 26 25
160 Georgia 12846 C 26 25
161 Georgia 12847 T 26 25
162 Georgia 12848 A 26 25
163 Georgia 12849 G 26 25
164 Georgia 12850 A 26 25
165 Georgia 12851 T 26 25
166 Georgia 12852 T 26 25
167 Georgia 12853 C 26 25
168 Georgia 12854 C 26 25
169 Georgia 12855 C 26 25
170 Georgia 12856 T 26 25
171 Georgia 12857 A 26 25
172 Georgia 12858 A 26 25
173 Georgia 12859 G 26 25
174 Georgia 12860 A 26 25
175 Georgia 12861 G 26 25
176 Georgia 12862 T 26 25
177 Georgia 12863 G 26 25
178 Georgia 12864 A 26 25
179 Georgia 12865 T 26 25
180 Georgia 12866 G 26 25
181 Georgia 12867 G 26 25
182 Georgia 12868 A 26 25
183 Georgia 12869 A 26 25
184 Georgia 12870 C 26 25
185 Georgia 12871 T 26 25
186 Georgia 12872 G 26 25
187 Georgia 12873 G 26 25
188 Georgia 12874 T 26 25
189 Georgia 12875 A 26 25
190 Georgia 12876 C 26 25
191 Georgia 12877 T 26 25
192 Georgia 12878 A 26 25
193 Georgia 12879 T 26 25
194 Georgia 12880 C 26 25
195 Georgia 12881 T 26 25
196 Georgia 12882 A 26 25
197 Georgia 12883 T 26 25
198 Georgia 12884 A 26 25
199 Georgia 12885 C 26 25
200 Georgia 12886 A 26 25
201 Georgia 12887 G 26 25
202 Georgia 12888 A 26 25
203 Georgia 12889 A 26 25
204 Georgia 12890 C 26 25
205 Georgia 12891 T 26 25
206 Georgia 12892 G 26 25
207 Georgia 12893 G 26 25
208 Georgia 12894 A 26 25
209 Georgia 12895 A 26 25
210 Georgia 12896 C 26 25
211 Georgia 12897 C 26 25
212 Georgia 12898 A 26 25
213 Georgia 12899 C 26 25
214 Georgia 12900 C 26 25
215 Georgia 12901 T 26 25
216 Georgia 12902 T 26 25
217 Georgia 12903 G 26 25
218 Georgia 12904 T 26 25
219 Georgia 12905 A 26 25
220 Georgia 12906 G 26 25
221 Georgia 12907 G 26 25
222 Georgia 12908 T 26 25
223 Georgia 12909 T 26 25
224 Georgia 12910 T 26 25
225 Georgia 12911 G 26 25
226 Georgia 12912 T 26 25
227 Georgia 12913 T 26 25
228 Georgia 12914 A 26 25
229 Georgia 12915 C 26 25
230 Georgia 12916 A 26 25
231 Georgia 12917 G 26 25
232 Georgia 12918 A 26 25
233 Georgia 12919 C 26 25
234 Georgia 12920 A 26 25
235 Georgia 12921 C 26 25
236 Georgia 12922 A 26 25
237 Georgia 12923 C 26 25
238 Georgia 12924 C 26 25
239 Georgia 12925 T 26 25
240 Georgia 12926 A 26 25
241 Georgia 12927 A 26 25
242 Georgia 12928 A 26 25
243 Georgia 12929 G 26 25
244 Georgia 12930 G 26 25
245 Georgia 12931 T 26 25
246 Georgia 12932 C 26 25
247 Georgia 12933 C 26 25
248 Georgia 12934 T 26 25
249 Georgia 12935 A 26 25
250 Georgia 12936 A 26 25
251 Georgia 12937 A 26 25
252 Georgia 12938 G 26 25
253 Georgia 12939 T 26 25
254 Georgia 12940 G 26 25
255 Georgia 12941 A 26 25
256 Georgia 12942 A 26 25
257 Georgia 12943 G 26 25
258 Georgia 12944 T 26 25
259 Georgia 12945 A 26 25
260 Georgia 12946 T 26 25
261 Georgia 12947 T 26 25
262 Georgia 12948 T 26 25
263 Georgia 12949 A 26 25
264 Georgia 12950 T 26 25
265 Georgia 12951 A 26 25
266 Georgia 12952 C 26 25
267 Georgia 12953 T 26 25
268 Georgia 12954 T 26 25
269 Georgia 12955 T 26 25
270 Georgia 12956 A 26 25
271 Georgia 12957 T 26 25
272 Georgia 12958 T 26 25
273 Georgia 12959 A 26 25
274 Georgia 12960 A 26 25
275 Georgia 12961 A 26 25
276 Georgia 12962 G 26 25
277 Georgia 12963 G 26 25
278 Georgia 12964 A 26 25
279 Georgia 12965 T 26 25
280 Georgia 12966 T 26 25
281 Georgia 12967 A 26 25
282 Georgia 12968 A 26 25
283 Georgia 12969 A 26 25
284 Georgia 12970 C 26 25
285 Georgia 12971 A 26 25
286 Georgia 12972 A 26 25
287 Georgia 12973 C 26 25
288 Georgia 12974 C 26 25
289 Georgia 12975 T 26 25
290 Georgia 12976 A 26 25
291 Georgia 12977 A 26 25
292 Georgia 12978 A 26 25
293 Georgia 12979 T 26 25
294 Georgia 12980 A 26 25
295 Georgia 12981 G 26 25
296 Georgia 12982 A 26 25
297 Georgia 12983 G 26 25
298 Georgia 12984 G 26 25
299 Georgia 12985 T 26 25
300 Georgia 12986 A 26 25
301 Georgia 12987 T 26 25
302 Georgia 12988 G 26 25
303 Georgia 12989 G 26 25
304 Georgia 12990 T 26 25
305 Georgia 12991 A 26 25
306 Georgia 12992 C 26 25
307 Georgia 12993 T 26 25
308 Georgia 12994 T 26 25
309 Georgia 12995 G 26 25
310 Georgia 12996 G 26 25
311 Georgia 12997 T 26 25
312 Georgia 12998 A 26 25
313 Georgia 12999 G 26 25
314 Georgia 13000 T 26 25
315 Georgia 13001 T 26 25
316 Georgia 13002 T 26 25
317 Georgia 13003 A 26 25
318 Georgia 13004 G 26 25
319 Georgia 13005 C 26 25
320 Georgia 13006 T 26 25
321 Georgia 13007 G 26 25
322 Georgia 13008 C 26 25
323 Georgia 13009 C 26 25
324 Georgia 13010 A 26 25
325 Georgia 13011 C 26 25
326 Georgia 13012 A 26 25
327 Georgia 13013 G 26 25
328 Georgia 13014 T 26 25
329 Georgia 13015 A 26 25
330 Georgia 13016 C 26 25
331 Georgia 13017 G 26 25
332 Georgia 13018 T 26 25
333 Georgia 13019 C 26 25
334 Georgia 13020 T 26 25
335 Georgia 13021 A 26 25
336 Georgia 13022 C 26 25
337 Georgia 13023 A 26 25
338 Georgia 13024 A 26 25