National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                         1            
R   18             1                        
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Gambia 12686 A 390 390
1 Gambia 12687 A 390 390
2 Gambia 12688 T 390 390
3 Gambia 12689 A 390 390
4 Gambia 12690 A 390 390
5 Gambia 12691 T 390 390
6 Gambia 12692 G 390 390
7 Gambia 12693 A 390 390
8 Gambia 12694 G 390 390
9 Gambia 12695 C 390 390
10 Gambia 12696 T 390 390
11 Gambia 12697 T 390 390
12 Gambia 12698 A 390 390
13 Gambia 12699 G 390 390
14 Gambia 12700 T 390 390
15 Gambia 12701 C 390 390
16 Gambia 12702 C 390 390
17 Gambia 12703 T 390 390
18 Gambia 12704 G 390 390
19 Gambia 12705 T 390 390
20 Gambia 12706 T 390 390
21 Gambia 12707 G 390 390
22 Gambia 12708 C 390 390
23 Gambia 12709 A 390 390
24 Gambia 12710 C 390 390
25 Gambia 12711 T 390 390
26 Gambia 12712 A 390 390
27 Gambia 12713 C 390 390
28 Gambia 12714 G 390 390
29 Gambia 12715 A 390 390
30 Gambia 12716 C 390 390
31 Gambia 12717 A 390 390
32 Gambia 12718 G A 390 384 Gln4151Gln
33 Gambia 12719 A 390 390
34 Gambia 12720 T 390 390
35 Gambia 12721 G 390 390
36 Gambia 12722 T 390 390
37 Gambia 12723 C 390 390
38 Gambia 12724 T 390 390
39 Gambia 12725 T 390 390
40 Gambia 12726 G 390 390
41 Gambia 12727 T 390 390
42 Gambia 12728 G 390 390
43 Gambia 12729 C 390 390
44 Gambia 12730 T 390 390
45 Gambia 12731 G 390 390
46 Gambia 12732 C 390 390
47 Gambia 12733 C 427 427
48 Gambia 12734 G 427 427
49 Gambia 12735 G 427 427
50 Gambia 12736 T 427 427
51 Gambia 12737 A 427 427
52 Gambia 12738 C 427 427
53 Gambia 12739 T 427 427
54 Gambia 12740 A 427 427
55 Gambia 12741 C 427 427
56 Gambia 12742 A 427 427
57 Gambia 12743 C 427 427
58 Gambia 12744 A 427 427
59 Gambia 12745 A 427 427
60 Gambia 12746 A 427 427
61 Gambia 12747 C 427 427
62 Gambia 12748 T 427 427
63 Gambia 12749 G 427 427
64 Gambia 12750 C 427 427
65 Gambia 12751 T 427 427
66 Gambia 12752 T 427 427
67 Gambia 12753 G 427 427
68 Gambia 12754 C 427 427
69 Gambia 12755 A 427 427
70 Gambia 12756 C 427 427
71 Gambia 12757 T 427 427
72 Gambia 12758 G 427 427
73 Gambia 12759 A 427 427
74 Gambia 12760 T 427 427
75 Gambia 12761 G 427 427
76 Gambia 12762 A 427 427
77 Gambia 12763 C 427 427
78 Gambia 12764 A 427 427
79 Gambia 12765 A 427 427
80 Gambia 12766 T 427 427
81 Gambia 12767 G 427 427
82 Gambia 12768 C 427 427
83 Gambia 12769 G 427 427
84 Gambia 12770 T 427 427
85 Gambia 12771 T 427 427
86 Gambia 12772 A 427 427
87 Gambia 12773 G 427 427
88 Gambia 12774 C 427 427
89 Gambia 12775 T 427 427
90 Gambia 12776 T 427 427
91 Gambia 12777 A 427 427
92 Gambia 12778 C 427 427
93 Gambia 12779 T 427 427
94 Gambia 12780 A 427 427
95 Gambia 12781 C 427 427
96 Gambia 12782 A 427 427
97 Gambia 12783 A 427 427
98 Gambia 12784 C 427 427
99 Gambia 12785 A 427 427
100 Gambia 12786 C 427 427
101 Gambia 12787 A 427 427
102 Gambia 12788 A 427 427
103 Gambia 12789 C 427 427
104 Gambia 12790 A 427 427
105 Gambia 12791 A 427 427
106 Gambia 12792 A 427 427
107 Gambia 12793 G 427 427
108 Gambia 12794 G 427 427
109 Gambia 12795 G 427 427
110 Gambia 12796 A 427 427
111 Gambia 12797 G 427 427
112 Gambia 12798 G 427 427
113 Gambia 12799 T 427 427
114 Gambia 12800 A 427 427
115 Gambia 12801 G 427 427
116 Gambia 12802 G 427 427
117 Gambia 12803 T 427 427
118 Gambia 12804 T 427 427
119 Gambia 12805 T 427 427
120 Gambia 12806 G 427 427
121 Gambia 12807 T 427 427
122 Gambia 12808 A 427 427
123 Gambia 12809 C 427 427
124 Gambia 12810 T 427 427
125 Gambia 12811 T 427 427
126 Gambia 12812 G 427 427
127 Gambia 12813 C 427 427
128 Gambia 12814 A 427 427
129 Gambia 12815 C 427 427
130 Gambia 12816 T 427 427
131 Gambia 12817 G 427 427
132 Gambia 12818 T 427 427
133 Gambia 12819 T 427 427
134 Gambia 12820 A 427 427
135 Gambia 12821 T 427 427
136 Gambia 12822 C 427 427
137 Gambia 12823 C 427 427
138 Gambia 12824 G 427 427
139 Gambia 12825 A 427 427
140 Gambia 12826 T 427 427
141 Gambia 12827 T 427 427
142 Gambia 12828 T 427 427
143 Gambia 12829 A 427 427
144 Gambia 12830 C 427 427
145 Gambia 12831 A 427 427
146 Gambia 12832 G 427 427
147 Gambia 12833 G 427 427
148 Gambia 12834 A 427 427
149 Gambia 12835 T 427 427
150 Gambia 12836 T 427 427
151 Gambia 12837 T 427 427
152 Gambia 12838 G 427 427
153 Gambia 12839 A 427 427
154 Gambia 12840 A 427 427
155 Gambia 12841 A 427 427
156 Gambia 12842 T 427 427
157 Gambia 12843 G 427 427
158 Gambia 12844 G 427 427
159 Gambia 12845 G 427 427
160 Gambia 12846 C 427 427
161 Gambia 12847 T 427 427
162 Gambia 12848 A 427 427
163 Gambia 12849 G 427 427
164 Gambia 12850 A 427 427
165 Gambia 12851 T 427 427
166 Gambia 12852 T 427 427
167 Gambia 12853 C 427 427
168 Gambia 12854 C 427 427
169 Gambia 12855 C 427 427
170 Gambia 12856 T 427 427
171 Gambia 12857 A 427 427
172 Gambia 12858 A 427 427
173 Gambia 12859 G 427 427
174 Gambia 12860 A 427 427
175 Gambia 12861 G 427 427
176 Gambia 12862 T 427 427
177 Gambia 12863 G 427 427
178 Gambia 12864 A 427 427
179 Gambia 12865 T 427 427
180 Gambia 12866 G 427 427
181 Gambia 12867 G 427 427
182 Gambia 12868 A 427 427
183 Gambia 12869 A 427 427
184 Gambia 12870 C 427 427
185 Gambia 12871 T 427 427
186 Gambia 12872 G 427 427
187 Gambia 12873 G 427 427
188 Gambia 12874 T 427 427
189 Gambia 12875 A 427 427
190 Gambia 12876 C 427 427
191 Gambia 12877 T 427 427
192 Gambia 12878 A 427 427
193 Gambia 12879 T 427 427
194 Gambia 12880 C 427 427
195 Gambia 12881 T 427 427
196 Gambia 12882 A 427 427
197 Gambia 12883 T 427 427
198 Gambia 12884 A 427 427
199 Gambia 12885 C 427 427
200 Gambia 12886 A 427 427
201 Gambia 12887 G 427 427
202 Gambia 12888 A 427 427
203 Gambia 12889 A 427 427
204 Gambia 12890 C 427 427
205 Gambia 12891 T 427 427
206 Gambia 12892 G 427 427
207 Gambia 12893 G 427 427
208 Gambia 12894 A 427 427
209 Gambia 12895 A 427 427
210 Gambia 12896 C 427 427
211 Gambia 12897 C 427 427
212 Gambia 12898 A 427 427
213 Gambia 12899 C 427 427
214 Gambia 12900 C 427 427
215 Gambia 12901 T 427 427
216 Gambia 12902 T 427 427
217 Gambia 12903 G 427 427
218 Gambia 12904 T 427 427
219 Gambia 12905 A 427 427
220 Gambia 12906 G 427 427
221 Gambia 12907 G 427 426
222 Gambia 12908 T 427 427
223 Gambia 12909 T 427 427
224 Gambia 12910 T 427 427
225 Gambia 12911 G 427 427
226 Gambia 12912 T 427 427
227 Gambia 12913 T 427 427
228 Gambia 12914 A 427 427
229 Gambia 12915 C 427 427
230 Gambia 12916 A 427 427
231 Gambia 12917 G 427 427
232 Gambia 12918 A 427 427
233 Gambia 12919 C 427 427
234 Gambia 12920 A 427 427
235 Gambia 12921 C 427 427
236 Gambia 12922 A 427 427
237 Gambia 12923 C 427 427
238 Gambia 12924 C 427 427
239 Gambia 12925 T 427 427
240 Gambia 12926 A 427 427
241 Gambia 12927 A 427 427
242 Gambia 12928 A 427 427
243 Gambia 12929 G 427 427
244 Gambia 12930 G 427 427
245 Gambia 12931 T 427 427
246 Gambia 12932 C 427 427
247 Gambia 12933 C 427 427
248 Gambia 12934 T 427 427
249 Gambia 12935 A 427 427
250 Gambia 12936 A 427 427
251 Gambia 12937 A 427 427
252 Gambia 12938 G 427 427
253 Gambia 12939 T 427 427
254 Gambia 12940 G 427 427
255 Gambia 12941 A 427 427
256 Gambia 12942 A 427 427
257 Gambia 12943 G 427 427
258 Gambia 12944 T 427 427
259 Gambia 12945 A 427 427
260 Gambia 12946 T 427 427
261 Gambia 12947 T 427 427
262 Gambia 12948 T 427 427
263 Gambia 12949 A 427 427
264 Gambia 12950 T 427 427
265 Gambia 12951 A 427 427
266 Gambia 12952 C 427 427
267 Gambia 12953 T 427 427
268 Gambia 12954 T 427 427
269 Gambia 12955 T 427 427
270 Gambia 12956 A 427 427
271 Gambia 12957 T 427 427
272 Gambia 12958 T 427 427
273 Gambia 12959 A 427 427
274 Gambia 12960 A 427 427
275 Gambia 12961 A 427 427
276 Gambia 12962 G 427 427
277 Gambia 12963 G 427 427
278 Gambia 12964 A 427 427
279 Gambia 12965 T 427 427
280 Gambia 12966 T 427 427
281 Gambia 12967 A 427 427
282 Gambia 12968 A 427 427
283 Gambia 12969 A 427 427
284 Gambia 12970 C 427 427
285 Gambia 12971 A 427 427
286 Gambia 12972 A 427 427
287 Gambia 12973 C 427 427
288 Gambia 12974 C 427 427
289 Gambia 12975 T 427 427
290 Gambia 12976 A 427 427
291 Gambia 12977 A 427 427
292 Gambia 12978 A 427 427
293 Gambia 12979 T 427 427
294 Gambia 12980 A 427 427
295 Gambia 12981 G T 427 426 Arg4239Ile
296 Gambia 12982 A 427 427
297 Gambia 12983 G 427 427
298 Gambia 12984 G 427 427
299 Gambia 12985 T 427 427
300 Gambia 12986 A 427 427
301 Gambia 12987 T 427 427
302 Gambia 12988 G 427 427
303 Gambia 12989 G 427 427
304 Gambia 12990 T 427 427
305 Gambia 12991 A 427 427
306 Gambia 12992 C 427 427
307 Gambia 12993 T 427 427
308 Gambia 12994 T 427 427
309 Gambia 12995 G 427 427
310 Gambia 12996 G 427 427
311 Gambia 12997 T 427 427
312 Gambia 12998 A 427 427
313 Gambia 12999 G 427 427
314 Gambia 13000 T 427 427
315 Gambia 13001 T 427 427
316 Gambia 13002 T 427 427
317 Gambia 13003 A 427 427
318 Gambia 13004 G 427 427
319 Gambia 13005 C 427 427
320 Gambia 13006 T 427 427
321 Gambia 13007 G 427 427
322 Gambia 13008 C 427 427
323 Gambia 13009 C 427 427
324 Gambia 13010 A 427 427
325 Gambia 13011 C 427 427
326 Gambia 13012 A 427 427
327 Gambia 13013 G 427 427
328 Gambia 13014 T 427 427
329 Gambia 13015 A 427 427
330 Gambia 13016 C 427 427
331 Gambia 13017 G 427 427
332 Gambia 13018 T 427 427
333 Gambia 13019 C 427 427
334 Gambia 13020 T 427 427
335 Gambia 13021 A 427 427
336 Gambia 13022 C 427 427
337 Gambia 13023 A 427 427
338 Gambia 13024 A 427 427