National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30                                      
C   9                                      
D   18                                      
E   9                                      
F   12                                      
G   27                                      
I   6                                      
K   21                                      
L   45                                      
M   6                                      
N   21                                      
P   18                                      
Q   12                                      
R   18                                      
S   15                                      
T   36                                      
V   18                                      
W   3                                      
Y   15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Gabon 12686 A 4 4
1 Gabon 12687 A 4 4
2 Gabon 12688 T 4 4
3 Gabon 12689 A 4 4
4 Gabon 12690 A 4 4
5 Gabon 12691 T 4 4
6 Gabon 12692 G 4 4
7 Gabon 12693 A 4 4
8 Gabon 12694 G 4 4
9 Gabon 12695 C 4 4
10 Gabon 12696 T 4 4
11 Gabon 12697 T 4 4
12 Gabon 12698 A 4 4
13 Gabon 12699 G 4 4
14 Gabon 12700 T 4 4
15 Gabon 12701 C 4 4
16 Gabon 12702 C 4 4
17 Gabon 12703 T 4 4
18 Gabon 12704 G 4 4
19 Gabon 12705 T 4 4
20 Gabon 12706 T 4 4
21 Gabon 12707 G 4 4
22 Gabon 12708 C 4 4
23 Gabon 12709 A 4 4
24 Gabon 12710 C 4 4
25 Gabon 12711 T 4 4
26 Gabon 12712 A 4 4
27 Gabon 12713 C 4 4
28 Gabon 12714 G 4 4
29 Gabon 12715 A 4 4
30 Gabon 12716 C 4 4
31 Gabon 12717 A 4 4
32 Gabon 12718 G 4 4
33 Gabon 12719 A 4 4
34 Gabon 12720 T 4 4
35 Gabon 12721 G 4 4
36 Gabon 12722 T 4 4
37 Gabon 12723 C 4 4
38 Gabon 12724 T 4 4
39 Gabon 12725 T 4 4
40 Gabon 12726 G 4 4
41 Gabon 12727 T 4 4
42 Gabon 12728 G 4 4
43 Gabon 12729 C 4 4
44 Gabon 12730 T 4 4
45 Gabon 12731 G 4 4
46 Gabon 12732 C 4 4
47 Gabon 12733 C 4 4
48 Gabon 12734 G 4 4
49 Gabon 12735 G 4 4
50 Gabon 12736 T 4 4
51 Gabon 12737 A 4 4
52 Gabon 12738 C 4 4
53 Gabon 12739 T 4 4
54 Gabon 12740 A 4 4
55 Gabon 12741 C 4 4
56 Gabon 12742 A 4 4
57 Gabon 12743 C 4 4
58 Gabon 12744 A 4 4
59 Gabon 12745 A 4 4
60 Gabon 12746 A 4 4
61 Gabon 12747 C 4 4
62 Gabon 12748 T 4 4
63 Gabon 12749 G 4 4
64 Gabon 12750 C 4 4
65 Gabon 12751 T 4 4
66 Gabon 12752 T 4 4
67 Gabon 12753 G 4 4
68 Gabon 12754 C 4 4
69 Gabon 12755 A 4 4
70 Gabon 12756 C 4 4
71 Gabon 12757 T 4 4
72 Gabon 12758 G 4 4
73 Gabon 12759 A 4 4
74 Gabon 12760 T 4 4
75 Gabon 12761 G 4 4
76 Gabon 12762 A 4 4
77 Gabon 12763 C 4 4
78 Gabon 12764 A 4 4
79 Gabon 12765 A 4 4
80 Gabon 12766 T 4 4
81 Gabon 12767 G 4 4
82 Gabon 12768 C 4 4
83 Gabon 12769 G 4 4
84 Gabon 12770 T 4 4
85 Gabon 12771 T 4 4
86 Gabon 12772 A 4 4
87 Gabon 12773 G 4 4
88 Gabon 12774 C 4 4
89 Gabon 12775 T 4 4
90 Gabon 12776 T 4 4
91 Gabon 12777 A 4 4
92 Gabon 12778 C 4 4
93 Gabon 12779 T 4 4
94 Gabon 12780 A 4 4
95 Gabon 12781 C 4 4
96 Gabon 12782 A 4 4
97 Gabon 12783 A 4 4
98 Gabon 12784 C 4 4
99 Gabon 12785 A 4 4
100 Gabon 12786 C 4 4
101 Gabon 12787 A 4 4
102 Gabon 12788 A 4 4
103 Gabon 12789 C 4 4
104 Gabon 12790 A 4 4
105 Gabon 12791 A 4 4
106 Gabon 12792 A 4 4
107 Gabon 12793 G 4 4
108 Gabon 12794 G 4 4
109 Gabon 12795 G 4 4
110 Gabon 12796 A 4 4
111 Gabon 12797 G 4 4
112 Gabon 12798 G 4 4
113 Gabon 12799 T 4 4
114 Gabon 12800 A 4 4
115 Gabon 12801 G 4 4
116 Gabon 12802 G 4 4
117 Gabon 12803 T 4 4
118 Gabon 12804 T 4 4
119 Gabon 12805 T 4 4
120 Gabon 12806 G 4 4
121 Gabon 12807 T 4 4
122 Gabon 12808 A 4 4
123 Gabon 12809 C 4 4
124 Gabon 12810 T 4 4
125 Gabon 12811 T 4 4
126 Gabon 12812 G 4 4
127 Gabon 12813 C 4 4
128 Gabon 12814 A 4 4
129 Gabon 12815 C 4 4
130 Gabon 12816 T 4 4
131 Gabon 12817 G 4 4
132 Gabon 12818 T 4 4
133 Gabon 12819 T 4 4
134 Gabon 12820 A 4 4
135 Gabon 12821 T 4 4
136 Gabon 12822 C 4 4
137 Gabon 12823 C 4 4
138 Gabon 12824 G 4 4
139 Gabon 12825 A 4 4
140 Gabon 12826 T 4 4
141 Gabon 12827 T 4 4
142 Gabon 12828 T 4 4
143 Gabon 12829 A 4 4
144 Gabon 12830 C 4 4
145 Gabon 12831 A 4 4
146 Gabon 12832 G 4 4
147 Gabon 12833 G 4 4
148 Gabon 12834 A 4 4
149 Gabon 12835 T 4 4
150 Gabon 12836 T 4 4
151 Gabon 12837 T 4 4
152 Gabon 12838 G 4 4
153 Gabon 12839 A 4 4
154 Gabon 12840 A 4 4
155 Gabon 12841 A 4 4
156 Gabon 12842 T 4 4
157 Gabon 12843 G 4 4
158 Gabon 12844 G 4 4
159 Gabon 12845 G 4 4
160 Gabon 12846 C 4 4
161 Gabon 12847 T 4 4
162 Gabon 12848 A 4 4
163 Gabon 12849 G 4 4
164 Gabon 12850 A 4 4
165 Gabon 12851 T 4 4
166 Gabon 12852 T 4 4
167 Gabon 12853 C 4 4
168 Gabon 12854 C 4 4
169 Gabon 12855 C 4 4
170 Gabon 12856 T 4 4
171 Gabon 12857 A 4 4
172 Gabon 12858 A 4 4
173 Gabon 12859 G 4 4
174 Gabon 12860 A 4 4
175 Gabon 12861 G 4 4
176 Gabon 12862 T 4 4
177 Gabon 12863 G 4 4
178 Gabon 12864 A 4 4
179 Gabon 12865 T 4 4
180 Gabon 12866 G 4 4
181 Gabon 12867 G 4 4
182 Gabon 12868 A 4 4
183 Gabon 12869 A 4 4
184 Gabon 12870 C 4 4
185 Gabon 12871 T 4 4
186 Gabon 12872 G 4 4
187 Gabon 12873 G 4 4
188 Gabon 12874 T 4 4
189 Gabon 12875 A 4 4
190 Gabon 12876 C 4 4
191 Gabon 12877 T 4 4
192 Gabon 12878 A 4 4
193 Gabon 12879 T 4 4
194 Gabon 12880 C 4 4
195 Gabon 12881 T 4 4
196 Gabon 12882 A 4 4
197 Gabon 12883 T 4 4
198 Gabon 12884 A 4 4
199 Gabon 12885 C 4 4
200 Gabon 12886 A 4 4
201 Gabon 12887 G 4 4
202 Gabon 12888 A 4 4
203 Gabon 12889 A 4 4
204 Gabon 12890 C 4 4
205 Gabon 12891 T 4 4
206 Gabon 12892 G 4 4
207 Gabon 12893 G 4 4
208 Gabon 12894 A 4 4
209 Gabon 12895 A 4 4
210 Gabon 12896 C 4 4
211 Gabon 12897 C 4 4
212 Gabon 12898 A 4 4
213 Gabon 12899 C 4 4
214 Gabon 12900 C 4 4
215 Gabon 12901 T 4 4
216 Gabon 12902 T 4 4
217 Gabon 12903 G 4 4
218 Gabon 12904 T 4 4
219 Gabon 12905 A 4 4
220 Gabon 12906 G 4 4
221 Gabon 12907 G 4 4
222 Gabon 12908 T 4 4
223 Gabon 12909 T 4 4
224 Gabon 12910 T 4 4
225 Gabon 12911 G 4 4
226 Gabon 12912 T 4 4
227 Gabon 12913 T 4 4
228 Gabon 12914 A 4 4
229 Gabon 12915 C 4 4
230 Gabon 12916 A 4 4
231 Gabon 12917 G 4 4
232 Gabon 12918 A 4 4
233 Gabon 12919 C 4 4
234 Gabon 12920 A 4 4
235 Gabon 12921 C 4 4
236 Gabon 12922 A 4 4
237 Gabon 12923 C 4 4
238 Gabon 12924 C 4 4
239 Gabon 12925 T 4 4
240 Gabon 12926 A 4 4
241 Gabon 12927 A 4 4
242 Gabon 12928 A 4 4
243 Gabon 12929 G 4 4
244 Gabon 12930 G 4 4
245 Gabon 12931 T 4 4
246 Gabon 12932 C 4 4
247 Gabon 12933 C 4 4
248 Gabon 12934 T 4 4
249 Gabon 12935 A 4 4
250 Gabon 12936 A 4 4
251 Gabon 12937 A 4 4
252 Gabon 12938 G 4 4
253 Gabon 12939 T 4 4
254 Gabon 12940 G 4 4
255 Gabon 12941 A 4 4
256 Gabon 12942 A 4 4
257 Gabon 12943 G 4 4
258 Gabon 12944 T 4 4
259 Gabon 12945 A 4 4
260 Gabon 12946 T 4 4
261 Gabon 12947 T 4 4
262 Gabon 12948 T 4 4
263 Gabon 12949 A 4 4
264 Gabon 12950 T 4 4
265 Gabon 12951 A 4 4
266 Gabon 12952 C 4 4
267 Gabon 12953 T 4 4
268 Gabon 12954 T 4 4
269 Gabon 12955 T 4 4
270 Gabon 12956 A 4 4
271 Gabon 12957 T 4 4
272 Gabon 12958 T 4 4
273 Gabon 12959 A 4 4
274 Gabon 12960 A 4 4
275 Gabon 12961 A 4 4
276 Gabon 12962 G 4 4
277 Gabon 12963 G 4 4
278 Gabon 12964 A 4 4
279 Gabon 12965 T 4 4
280 Gabon 12966 T 4 4
281 Gabon 12967 A 4 4
282 Gabon 12968 A 4 4
283 Gabon 12969 A 4 4
284 Gabon 12970 C 4 4
285 Gabon 12971 A 4 4
286 Gabon 12972 A 4 4
287 Gabon 12973 C 4 4
288 Gabon 12974 C 4 4
289 Gabon 12975 T 4 4
290 Gabon 12976 A 4 4
291 Gabon 12977 A 4 4
292 Gabon 12978 A 4 4
293 Gabon 12979 T 4 4
294 Gabon 12980 A 4 4
295 Gabon 12981 G 4 4
296 Gabon 12982 A 4 4
297 Gabon 12983 G 4 4
298 Gabon 12984 G 4 4
299 Gabon 12985 T 4 4
300 Gabon 12986 A 4 4
301 Gabon 12987 T 4 4
302 Gabon 12988 G 4 4
303 Gabon 12989 G 4 4
304 Gabon 12990 T 4 4
305 Gabon 12991 A 4 4
306 Gabon 12992 C 4 4
307 Gabon 12993 T 4 4
308 Gabon 12994 T 4 4
309 Gabon 12995 G 4 4
310 Gabon 12996 G 4 4
311 Gabon 12997 T 4 4
312 Gabon 12998 A 4 4
313 Gabon 12999 G 4 4
314 Gabon 13000 T 4 4
315 Gabon 13001 T 4 4
316 Gabon 13002 T 4 4
317 Gabon 13003 A 4 4
318 Gabon 13004 G 4 4
319 Gabon 13005 C 4 4
320 Gabon 13006 T 4 4
321 Gabon 13007 G 4 4
322 Gabon 13008 C 4 4
323 Gabon 13009 C 4 4
324 Gabon 13010 A 4 4
325 Gabon 13011 C 4 4
326 Gabon 13012 A 4 4
327 Gabon 13013 G 4 4
328 Gabon 13014 T 4 4
329 Gabon 13015 A 4 4
330 Gabon 13016 C 4 4
331 Gabon 13017 G 4 4
332 Gabon 13018 T 4 4
333 Gabon 13019 C 4 4
334 Gabon 13020 T 4 4
335 Gabon 13021 A 4 4
336 Gabon 13022 C 4 4
337 Gabon 13023 A 4 4
338 Gabon 13024 A 4 4