National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G I K L M N P Q R S T V W Y
-   339                                      
?                                          
A   30 6                               1    
C   9                                      
D   18     1     1         1                
E   9                                      
F   12         1                            
G   27                           1          
I   6             1                        
K   21                                      
L   45         1       4                    
M   6             1                 1      
N   21                     2                
P   18                 1     1       1      
Q   12                         1            
R   18                                      
S   15                       1     2        
T   36 1           6                        
V   18                                      
W   3                                      
Y   15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 France 12686 A 4211 4211
1 France 12687 A 4216 4216
2 France 12688 T 4216 4216
3 France 12689 A 4218 4218
4 France 12690 A 4218 4218
5 France 12691 T 4218 4218
6 France 12692 G 4220 4220
7 France 12693 A 4221 4221
8 France 12694 G 4222 4221
9 France 12695 C 4222 4222
10 France 12696 T 4222 4222
11 France 12697 T 4222 4222
12 France 12698 A 4222 4222
13 France 12699 G 4227 4227
14 France 12700 T 4227 4226
15 France 12701 C 4227 4225
16 France 12702 C 4227 4226
17 France 12703 T 4227 4225
18 France 12704 G 4229 4228
19 France 12705 T 4229 4228
20 France 12706 T 4229 4228
21 France 12707 G 4229 4228
22 France 12708 C 4231 4229
23 France 12709 A 4231 4229
24 France 12710 C 4232 4231
25 France 12711 T 4232 4229
26 France 12712 A G 4233 4228 Leu4149Leu
27 France 12713 C 4233 4228
28 France 12714 G 4233 4229
29 France 12715 A 4233 4228
30 France 12716 C 4233 4230
31 France 12717 A 4232 4228
32 France 12718 G 4235 4231
33 France 12719 A 4235 4230
34 France 12720 T C 4235 4231 Met4152Thr
35 France 12721 G 4235 4234
36 France 12722 T C 4235 4229 Ser4153Pro
37 France 12723 C 4235 4233
38 France 12724 T C 4235 4231 Ser4153Ser
39 France 12725 T 4236 4233
40 France 12726 G 4236 4234
41 France 12727 T 4236 4233
42 France 12728 G 4236 4233
43 France 12729 C 4236 4231
44 France 12730 T 4235 4229
45 France 12731 G 4236 4231
46 France 12732 C 4236 4231
47 France 12733 C T 4236 4224 Ala4156Ala
48 France 12734 G 4236 4231
49 France 12735 G 4241 4236
50 France 12736 T 4241 4237
51 France 12737 A 4241 4236
52 France 12738 C 4241 4235
53 France 12739 T 4241 4237
54 France 12740 A 4242 4239
55 France 12741 C T 4242 4238 Thr4159Ile
56 France 12742 A 4242 4239
57 France 12743 C 4243 4240
58 France 12744 A 4241 4236
59 France 12745 A G 4241 4234 Gln4160Gln
60 France 12746 A 4241 4236
61 France 12747 C 4244 4239
62 France 12748 T 4245 4241
63 France 12749 G 4246 4242
64 France 12750 C 4245 4241
65 France 12751 T A 4245 4240 Ala4162Ala
66 France 12752 T 4245 4239
67 France 12753 G 4245 4239
68 France 12754 C 4246 4241
69 France 12755 A G 4247 4205 Thr4164Ala
70 France 12756 C T 4247 4236 Thr4164Ile
71 France 12757 T 4247 4239
72 France 12758 G 4250 4242
73 France 12759 A G 4249 4239 Asp4165Gly
74 France 12760 T 4249 4243
75 France 12761 G A 4250 4242 Asp4166Asn
76 France 12762 A 4250 4243
77 France 12763 C 4251 4242
78 France 12764 A 4252 4246
79 France 12765 A 4252 4246
80 France 12766 T 4253 4245
81 France 12767 G 4256 4247
82 France 12768 C 4256 4248
83 France 12769 G T,A 4257 4242 Ala4168Ala-p.Ala4168Ala
84 France 12770 T 4257 4249
85 France 12771 T 4257 4250
86 France 12772 A 4257 4249
87 France 12773 G 4257 4251
88 France 12774 C T 4257 4250 Ala4170Val
89 France 12775 T 4257 4252
90 France 12776 T 4256 4249
91 France 12777 A 4256 4251
92 France 12778 C T 4256 4247 Tyr4171Tyr
93 France 12779 T 4256 4250
94 France 12780 A 4256 4250
95 France 12781 C 4256 4251
96 France 12782 A 4256 4250
97 France 12783 A 4257 4252
98 France 12784 C T 4257 4245 Asn4173Asn
99 France 12785 A 4256 4249
100 France 12786 C 4259 4255
101 France 12787 A 4260 4255
102 France 12788 A 4260 4257
103 France 12789 C T 4260 4253 Thr4175Ile
104 France 12790 A 4260 4257
105 France 12791 A 4260 4256
106 France 12792 A 4259 4256
107 France 12793 G 4259 4256
108 France 12794 G 4260 4257
109 France 12795 G 4260 4257
110 France 12796 A 4258 4254
111 France 12797 G 4258 4255
112 France 12798 G 4259 4256
113 France 12799 T 4259 4255
114 France 12800 A 4259 4256
115 France 12801 G 4260 4258
116 France 12802 G 4260 4258
117 France 12803 T 4259 4255
118 France 12804 T 4259 4256
119 France 12805 T 4259 4256
120 France 12806 G 4259 4257
121 France 12807 T 4259 4259
122 France 12808 A 4259 4259
123 France 12809 C T 4259 4244 Leu4182Phe
124 France 12810 T 4258 4258
125 France 12811 T 4258 4256
126 France 12812 G 4258 4258
127 France 12813 C 4258 4258
128 France 12814 A 4258 4258
129 France 12815 C 4260 4260
130 France 12816 T 4257 4257
131 France 12817 G 4259 4258
132 France 12818 T 4259 4258
133 France 12819 T 4259 4258
134 France 12820 A G 4259 4257 Leu4185Leu
135 France 12821 T 4259 4256
136 France 12822 C 4259 4258
137 France 12823 C T 4259 4245 Ser4186Ser
138 France 12824 G 4259 4257
139 France 12825 A 4259 4258
140 France 12826 T 4258 4257
141 France 12827 T 4257 4255
142 France 12828 T 4257 4255
143 France 12829 A 4257 4255
144 France 12830 C 4257 4255
145 France 12831 A 4257 4255
146 France 12832 G 4257 4254
147 France 12833 G 4257 4256
148 France 12834 A 4257 4255
149 France 12835 T 4257 4255
150 France 12836 T 4257 4255
151 France 12837 T 4257 4255
152 France 12838 G 4257 4255
153 France 12839 A 4257 4255
154 France 12840 A 4257 4255
155 France 12841 A 4257 4254
156 France 12842 T 4256 4254
157 France 12843 G 4257 4254
158 France 12844 G 4257 4254
159 France 12845 G 4257 4253
160 France 12846 C 4257 4255
161 France 12847 T 4257 4255
162 France 12848 A 4257 4255
163 France 12849 G 4257 4254
164 France 12850 A 4258 4256
165 France 12851 T 4260 4256
166 France 12852 T 4259 4257
167 France 12853 C T 4260 4257 Phe4196Phe
168 France 12854 C 4259 4257
169 France 12855 C 4259 4257
170 France 12856 T 4259 4257
171 France 12857 A 4259 4257
172 France 12858 A 4259 4257
173 France 12859 G 4259 4257
174 France 12860 A 4259 4256
175 France 12861 G 4259 4256
176 France 12862 T 4257 4250
177 France 12863 G 4257 4250
178 France 12864 A 4257 4250
179 France 12865 T 4257 4250
180 France 12866 G A 4256 4249 Gly4201Arg
181 France 12867 G 4256 4249
182 France 12868 A 4256 4248
183 France 12869 A 4256 4249
184 France 12870 C 4255 4248
185 France 12871 T 4255 4246
186 France 12872 G 4256 4247
187 France 12873 G 4256 4249
188 France 12874 T 4256 4247
189 France 12875 A 4256 4247
190 France 12876 C 4253 4248
191 France 12877 T 4255 4247
192 France 12878 A 4258 4250
193 France 12879 T 4258 4250
194 France 12880 C T 4258 4245 Ile4205Ile
195 France 12881 T 4258 4247
196 France 12882 A 4259 4249
197 France 12883 T 4259 4249
198 France 12884 A 4260 4249
199 France 12885 C T 4260 4249 Thr4207Ile
200 France 12886 A 4252 4237
201 France 12887 G 4254 4238
202 France 12888 A 4254 4238
203 France 12889 A 4254 4237
204 France 12890 C 4254 4237
205 France 12891 T 4252 4234
206 France 12892 G 4252 4233
207 France 12893 G 4252 4234
208 France 12894 A 4252 4233
209 France 12895 A 4252 4234
210 France 12896 C A 4250 4230 Pro4211Thr
211 France 12897 C 4250 4232
212 France 12898 A G 4249 4226 Pro4211Pro
213 France 12899 C 4249 4231
214 France 12900 C 4248 4230
215 France 12901 T 4248 4230
216 France 12902 T 4248 4229
217 France 12903 G 4248 4223
218 France 12904 T 4248 4229
219 France 12905 A 4248 4228
220 France 12906 G 4248 4229
221 France 12907 G 4248 4229
222 France 12908 T 4241 4224
223 France 12909 T 4241 4221
224 France 12910 T 4240 4223
225 France 12911 G 4242 4228
226 France 12912 T 4242 4229
227 France 12913 T 4242 4229
228 France 12914 A 4242 4226
229 France 12915 C T 4241 4215 Thr4217Ile
230 France 12916 A 4241 4227
231 France 12917 G 4241 4225
232 France 12918 A 4241 4228
233 France 12919 C T 4241 4227 Asp4218Asp
234 France 12920 A 4240 4219
235 France 12921 C 4241 4226
236 France 12922 A 4241 4230
237 France 12923 C 4242 4233
238 France 12924 C T 4242 4231 Pro4220Leu
239 France 12925 T 4242 4232
240 France 12926 A 4242 4234
241 France 12927 A 4242 4234
242 France 12928 A 4242 4233
243 France 12929 G 4242 4233
244 France 12930 G 4237 4228
245 France 12931 T 4236 4223
246 France 12932 C 4234 4217
247 France 12933 C 4234 4218
248 France 12934 T 4234 4217
249 France 12935 A 4233 4215
250 France 12936 A 4233 4216
251 France 12937 A 4233 4216
252 France 12938 G 4233 4217
253 France 12939 T 4229 4213
254 France 12940 G 4229 4215
255 France 12941 A 4229 4216
256 France 12942 A 4229 4216
257 France 12943 G 4230 4222
258 France 12944 T 4230 4223
259 France 12945 A 4230 4224
260 France 12946 T 4230 4224
261 France 12947 T 4229 4219
262 France 12948 T 4229 4216
263 France 12949 A 4229 4219
264 France 12950 T 4229 4220
265 France 12951 A 4229 4218
266 France 12952 C 4229 4221
267 France 12953 T 4223 4210
268 France 12954 T 4222 4208
269 France 12955 T 4222 4208
270 France 12956 A 4222 4209
271 France 12957 T 4222 4208
272 France 12958 T 4221 4208
273 France 12959 A 4221 4207
274 France 12960 A 4221 4207
275 France 12961 A 4221 4208
276 France 12962 G 4222 4210
277 France 12963 G 4221 4209
278 France 12964 A 4220 4207
279 France 12965 T 4220 4207
280 France 12966 T 4220 4207
281 France 12967 A 4220 4208
282 France 12968 A 4220 4209
283 France 12969 A 4220 4209
284 France 12970 C T 4220 4198 Asn4235Asn
285 France 12971 A 4220 4204
286 France 12972 A 4220 4205
287 France 12973 C 4220 4207
288 France 12974 C 4220 4208
289 France 12975 T 4221 4208
290 France 12976 A 4221 4214
291 France 12977 A 4221 4216
292 France 12978 A 4221 4216
293 France 12979 T 4221 4216
294 France 12980 A 4220 4215
295 France 12981 G 4220 4214
296 France 12982 A 4215 4208
297 France 12983 G 4215 4209
298 France 12984 G 4216 4213
299 France 12985 T 4212 4209
300 France 12986 A 4212 4209
301 France 12987 T 4212 4209
302 France 12988 G T 4212 4098 Met4241Ile
303 France 12989 G 4213 4212
304 France 12990 T 4211 4210
305 France 12991 A 4211 4210
306 France 12992 C 4211 4210
307 France 12993 T 4208 4207
308 France 12994 T 4208 4207
309 France 12995 G 4207 4205
310 France 12996 G 4207 4206
311 France 12997 T 4207 4203
312 France 12998 A 4204 4203
313 France 12999 G 4204 4203
314 France 13000 T 4204 4201
315 France 13001 T 4204 4203
316 France 13002 T 4204 4204
317 France 13003 A G 4204 4202 Leu4246Leu
318 France 13004 G 4204 4204
319 France 13005 C 4204 4204
320 France 13006 T C,A 4203 4145 Ala4247Ala-p.Ala4247Ala
321 France 13007 G 4203 4203
322 France 13008 C 4203 4203
323 France 13009 C 4203 4203
324 France 13010 A 4203 4203
325 France 13011 C T 4203 4202 Thr4249Ile
326 France 13012 A 4203 4203
327 France 13013 G 4203 4203
328 France 13014 T 4203 4202
329 France 13015 A 4203 4203
330 France 13016 C 4203 4202
331 France 13017 G 4203 4203
332 France 13018 T 4203 4203
333 France 13019 C T 4203 4195 Leu4252Leu
334 France 13020 T 4203 4201
335 France 13021 A 4203 4202
336 France 13022 C 4201 4201
337 France 13023 A 4197 4197
338 France 13024 A 4196 4196